PXD001738

PXD001738 is an original dataset announced via ProteomeXchange.

Title	Shotgun Proteomics of Brachylophosaurus canadensis Blood Vessels
Description	Brachylophosaurus canadensis peptides from blood vessels isolated from within the bone were characterized using high resolution mass spectrometry. This allowed identification of actin, alpha and beta tubulin, various histones, myosin, and tropomyosin. Within the peptides, evidence of age (e.g., deamidation, oxidation, protein backbone cleavage) was present.
HostingRepository	PRIDE
AnnounceDate	2015-11-30
AnnouncementXML	Submission_2015-11-30_05:07:29.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Leonid Zamdborg
SpeciesList	scientific name: Brachylophosaurus canadensis (Campanian hadrosaur); NCBI TaxID: 643745; scientific name: Struthio camelus (Ostrich); NCBI TaxID: 8801; scientific name: Gallus gallus (Chicken); NCBI TaxID: 9031;
ModificationList	Amidated; Gln->pyro-Glu; Cytopiloyne; 3-deoxyglucosone; Didehydro; SMA; Menadione-HQ; Biotin; Oxidation; glycidamide; Hep; Delta:S(-1)Se(1); maleimide; Carbofuran; Ammonia-loss; Guanidinyl; Deoxy; Cation:Fe[II]; ethylamino; Carboxy; Phospho; Ethyl; Pro->Pyrrolidinone; MG-H1; Methylthio; CarbamidomethylDTT; Nethylmaleimide; Cation:Ca[II]; Dioxidation; Hex(1)HexNAc(2)dHex(2); GlyGly; Propargylamine; Delta:H(4)C(2)O(-1)S(1); Dehydrated; ISD_z+2_ion; Arg->Orn; CAF; Thiazolidine; Trioxidation; Diethyl; Met->Hsl; Trp->Oxolactone; Cys->Dha; Hex; Cation:Mg[II]; Hydroxymethyl; Benzoyl; Thioacyl; Carboxyethyl; Phosphopantetheine; Methyl; HexN; Isopropylphospho; Myristoyl; Ethanolyl; Carbamidomethyl; Cytopiloyne+water; DeStreak; Pro->Pyrrolidone; Phosphopropargyl; Arg->GluSA; Bromo; Dethiomethyl; Carboxymethyl; Delta:H(5)C(2); Formyl; Cation:Ag; Acetyl; Menadione; Pyro-carbamidomethyl; Lys->AminoadipicAcid; Delta:H(2)C(2); Crotonaldehyde; Glucosylgalactosyl; Lipoyl; Carbamyl; Propionamide; Sulfo; Fluoro; Cation:Na; Pro->pyro-Glu; Dansyl; Lys->Allysine; Trp->Kynurenin; Deamidated
Instrument	LTQ Orbitrap XL; Fourier Transform Ion Cyclotron Resonance Mass Spectrometer; LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2015-01-27 02:23:47	ID requested
⏵ 1	2015-11-30 05:07:30	announced

Cleland TP, Schroeter ER, Zamdborg L, Zheng W, Lee JE, Tran JC, Bern M, Duncan MB, Lebleu VS, Ahlf DR, Thomas PM, Kalluri R, Kelleher NL, Schweitzer MH, Mass Spectrometry and Antibody-Based Characterization of Blood Vessels from Brachylophosaurus canadensis. J Proteome Res, 14(12):5252-62(2015) [pubmed]

curator keyword: Biological

submitter keyword: Brachylophosaurus canadensis, paleoproteomics, blood vessels, dinosaur

Timothy Paul Cleland
contact affiliation	Department of Marine, Earth and Atmospheric Sciences, North Carolina State University, Raleigh, NC 27695
contact email	tcleland27@gmail.com
lab head
Leonid Zamdborg
contact affiliation	William Beaumont Hospital
contact email	zamdborl@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/11/PXD001738

PRIDE project URI

• PRIDE
  1. PXD001738
     1. Label: PRIDE project
     2. Name: Shotgun Proteomics of Brachylophosaurus canadensis Blood Vessels