PXD001644

PXD001644 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteomic analysis of Bombus terrestris queen haemolymph
Description	Enabled by recently available genomic resources for bumblebees, nano LC-MS/MS based proteomics was conducted to characterise the queen haemolymph proteome. The resulting mass spectrometry data were also utilised in a proteogenomic capacity to identify proteins missing from official gene sets and to improve gene models and annotation. 97 multiple-peptide supported proteins within queen bumblebee haemolymph were identified including 28 immunity-related proteins with roles in immune recognition, signalling and regulation. In addition 19 proteins with potential immune roles were identified. The haemolymph proteome is particularly rich in metabolism and transport proteins and comprised 18 proteins with unknown function.
HostingRepository	PRIDE
AnnounceDate	2015-02-24
AnnouncementXML	Submission_2015-02-24_02:13:13.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD001644
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	James Carolan
SpeciesList	scientific name: Bombus terrestris (Buff-tailed bumblebee) (Apis terrestris); NCBI TaxID: 30195;
ModificationList	No PTMs are included in the dataset
Instrument	LTQ Orbitrap XL

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2015-01-02 05:53:38	ID requested
⏵ 1	2015-02-24 02:13:14	announced

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

curator keyword: Biological
submitter keyword: Bumblebee, Queen, Haemolymph profile, proteogenomics

curator keyword: Biological

submitter keyword: Bumblebee, Queen, Haemolymph profile, proteogenomics

Contact List

James C Carolan
contact affiliation	Maynooth University Department of Biology Maynooth University, Maynooth, Co. Kildare, Ireland.
contact email	james.carolan@nuim.ie
lab head
James Carolan
contact affiliation	Biology
contact email	james.carolan@nuim.ie
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/02/PXD001644
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/02/PXD001644

PRIDE project URI

Repository Record List

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