PXD001567 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomics Analysis of Soybean Hypocotyl during Recovery after Flooding Stress |
Description | Soybean (Glycine max L. cv Enrei) seeds were sterilized with 2% sodium hypochlorite solution and then thoroughly rinsed in water. The sterilized seeds were sown 4 cm inside surface of sand in 450 mL of quartz seedling cases wetted with 150 mL water and grown at 25°C and 70% humidity in a growth chamber (Sanyo, Tokyo, Japan) under white fluorescent light (160 μmol m-2 s-1, 16 h light period/day). Two-day-old soybeans were flooded for 2 days and hypocotyl samples were collected at the day of removal of flooding and then at 2 more points during the 4-day recovery period. |
HostingRepository | PRIDE |
AnnounceDate | 2015-05-26 |
AnnouncementXML | Submission_2015-05-26_05:56:10.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Mudassar Khan |
SpeciesList | scientific name: Glycine max (Soybean) (Glycine hispida); NCBI TaxID: 3847; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ XL |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2014-12-03 00:30:12 | ID requested | |
⏵ 1 | 2015-05-26 05:56:11 | announced | |
Publication List
Khan MN, Sakata K, Komatsu S, Proteomic analysis of soybean hypocotyl during recovery after flooding stress. J Proteomics, 121():15-27(2015) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: proteomics, soybean, hypocotyl, flooding, recovery |
Contact List
Setsuko Komatsu |
contact affiliation | National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan |
contact email | skomatsu@affrc.go.jp |
lab head | |
Mudassar Khan |
contact affiliation | University of Tsukuba |
contact email | mnkhan@affrc.go.jp |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/05/PXD001567 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD001567
- Label: PRIDE project
- Name: Proteomics Analysis of Soybean Hypocotyl during Recovery after Flooding Stress