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PXD001490

PXD001490 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleMetaproteomics analyses of three chronically petroleum-polluted sites
DescriptionCrude oil is the one of the most important natural assets of humankind, yet it is a major environmental pollutant, in particular, in marine environments. One of the largest crude oil polluted areas in the word is the semi-enclosed Mediterranean Sea, where the metabolic potential of indigenous populations towards the chronic pollution at a large scale is yet to be defined, particularly in anaerobic and micro-anaerobic marine sites. Here, we provided a novel insight into the active microbial metabolism in sediments from three environments along the coastline of Italy. Microbial proteomes exhibited prevalence in anaerobic metabolism, not related to the biodegradation directly, suggesting the strong limitation by oxygen induced by the carbon overload. They also point at previously unrecognized metabolic coupling between methane and methanol utilizers as well as sulfur reducers in marine petroleum polluted sediments.
HostingRepositoryPRIDE
AnnounceDate2015-07-24
AnnouncementXMLSubmission_2015-08-24_09:04:14.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterFlorian-Alexander Herbst
SpeciesList scientific name: environmental samples; NCBI TaxID: 48479;
ModificationListiodoacetamide derivatized residue
InstrumentLTQ Orbitrap Velos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02014-11-13 07:41:27ID requested
12015-07-24 03:45:17announced
22015-08-24 09:04:15announcedUpdated publication reference for PubMed record(s): 26201687.
Publication List
Bargiela R, Herbst FA, Mart, í, nez-Mart, í, nez M, Seifert J, Rojo D, Cappello S, Genovese M, Crisafi F, Denaro R, Chernikova TN, Barbas C, von Bergen M, Yakimov MM, Ferrer M, Golyshin PN, Metaproteomics and metabolomics analyses of chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation. Proteomics, 15(20):3508-20(2015) [pubmed]
Keyword List
curator keyword: Metaproteomics, Biological
submitter keyword: Crude oil, metaproteomics, microbiology, pollution, sediment, marine, hydrocarbon
Contact List
Martin von Bergen
contact affiliationHead of Department for Proteomics, Helmholtz Centre for Environmental Research - UFZ, Germany
contact emailmartin.vonbergen@ufz.de
lab head
Florian-Alexander Herbst
contact affiliationAalborg University
contact emailfah@bio.aau.dk
dataset submitter
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Dataset FTP location
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