PXD001490 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Metaproteomics analyses of three chronically petroleum-polluted sites |
Description | Crude oil is the one of the most important natural assets of humankind, yet it is a major environmental pollutant, in particular, in marine environments. One of the largest crude oil polluted areas in the word is the semi-enclosed Mediterranean Sea, where the metabolic potential of indigenous populations towards the chronic pollution at a large scale is yet to be defined, particularly in anaerobic and micro-anaerobic marine sites. Here, we provided a novel insight into the active microbial metabolism in sediments from three environments along the coastline of Italy. Microbial proteomes exhibited prevalence in anaerobic metabolism, not related to the biodegradation directly, suggesting the strong limitation by oxygen induced by the carbon overload. They also point at previously unrecognized metabolic coupling between methane and methanol utilizers as well as sulfur reducers in marine petroleum polluted sediments. |
HostingRepository | PRIDE |
AnnounceDate | 2015-07-24 |
AnnouncementXML | Submission_2015-08-24_09:04:14.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Florian-Alexander Herbst |
SpeciesList | scientific name: environmental samples; NCBI TaxID: 48479; |
ModificationList | iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2014-11-13 07:41:27 | ID requested | |
1 | 2015-07-24 03:45:17 | announced | |
⏵ 2 | 2015-08-24 09:04:15 | announced | Updated publication reference for PubMed record(s): 26201687. |
Publication List
Bargiela R, Herbst FA, Mart, í, nez-Mart, í, nez M, Seifert J, Rojo D, Cappello S, Genovese M, Crisafi F, Denaro R, Chernikova TN, Barbas C, von Bergen M, Yakimov MM, Ferrer M, Golyshin PN, Metaproteomics and metabolomics analyses of chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation. Proteomics, 15(20):3508-20(2015) [pubmed] |
Keyword List
curator keyword: Metaproteomics, Biological |
submitter keyword: Crude oil, metaproteomics, microbiology, pollution, sediment, marine, hydrocarbon |
Contact List
Martin von Bergen |
contact affiliation | Head of Department for Proteomics, Helmholtz Centre for Environmental Research - UFZ, Germany |
contact email | martin.vonbergen@ufz.de |
lab head | |
Florian-Alexander Herbst |
contact affiliation | Aalborg University |
contact email | fah@bio.aau.dk |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/07/PXD001490 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD001490
- Label: PRIDE project
- Name: Metaproteomics analyses of three chronically petroleum-polluted sites