PXD001481

PXD001481 is an original dataset announced via ProteomeXchange.

Title	H.pylori, N.gonorrhoeae, E.coli LC-MS/MS
Description	We have developed approach and algorithm to annotated mass-spectra database creation and further spectral based amino acid substitution search. Algorithm is based on a robust procedure of spectral angle comparison. We have shown applicability of the algorithm to large scale datasets of Helicobacter pylori, Neisseria gonorrhoeae and Escherichia coli
HostingRepository	PRIDE
AnnounceDate	2017-10-24
AnnouncementXML	Submission_2017-10-24_03:46:07.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD001481
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Ilya Altukhov
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Helicobacter pylori J99 (Campylobacter pylori J99); NCBI TaxID: 85963; scientific name: Neisseria gonorrhoeae; NCBI TaxID: 485; scientific name: Helicobacter pylori H13-1; NCBI TaxID: 1400821; scientific name: Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090); NCBI TaxID: 242231; scientific name: Escherichia coli str. K-12 substr. MG1655; NCBI TaxID: 511145; scientific name: Helicobacter pylori A45; NCBI TaxID: 1231719; scientific name: Helicobacter pylori E48; NCBI TaxID: 1400820; scientific name: Helicobacter pylori 26695-1; NCBI TaxID: 1391726;
ModificationList	S-methyl-L-methionine; iodoacetamide derivatized residue
Instrument	TripleTOF 5600; maXis

Revision	Datetime	Status	ChangeLog Entry
0	2014-11-12 04:33:29	ID requested
1	2016-12-23 11:15:58	announced
⏵ 2	2017-10-24 03:46:08	announced	Updated project metadata.

Ischenko D, Alexeev D, Shitikov E, Kanygina A, Malakhova M, Kostryukova E, Larin A, Kovalchuk S, Pobeguts O, Butenko I, Anikanov N, Altukhov I, Ilina E, Govorun V, Large scale analysis of amino acid substitutions in bacterial proteomics. BMC Bioinformatics, 17(1):450(2016) [pubmed]

curator keyword: Biological

submitter keyword: H.pylori, N.gonorrhoeae, E.coli LC-MS/MS

Dmitry Alexeev
contact affiliation	PhD, head of bioinformatics lab, Research Institute of Physical-Chemical Medicine
contact email	alexeev@niifhm.ru
lab head
Ilya Altukhov
contact affiliation	Research Institute of Physical Chemical Medicine
contact email	ilya.altukhov@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/12/PXD001481

PRIDE project URI

• PRIDE
  1. PXD001481
     1. Label: PRIDE project
     2. Name: H.pylori, N.gonorrhoeae, E.coli LC-MS/MS