PXD001456

PXD001456 is an original dataset announced via ProteomeXchange.

Title	Project Grandiose, cell surface protein capture
Description	The aim of Project Grandiose has been to examine the process of somatic cell (specifically, murine fibroblast) conversion to induced pluripotent stem cells, at many levels (proteome, mRNA, DNA methylation, etc.), over the time course of the conversion. This dataset represents the cell surface proteome portion of the project, namely the set of cell surface glycoproteins that were detected over theproject time course.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:21:23.868.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Carl White
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	deamidated residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2014-10-31 09:27:14	ID requested
1	2014-11-27 03:15:55	announced
2	2019-06-12 03:00:56	announced	Updated publication reference for PubMed record(s): 25503233.
⏵ 3	2024-10-22 04:21:32	announced	2024-10-22: Updated project metadata.

Hussein SM, Puri MC, Tonge PD, Benevento M, Corso AJ, Clancy JL, Mosbergen R, Li M, Lee DS, Cloonan N, Wood DL, Munoz J, Middleton R, Korn O, Patel HR, White CA, Shin JY, Gauthier ME, L, ê, Cao KA, Kim JI, Mar JC, Shakiba N, Ritchie W, Rasko JE, Grimmond SM, Zandstra PW, Wells CA, Preiss T, Seo JS, Heck AJ, Rogers IM, Nagy A, Genome-wide characterization of the routes to pluripotency. Nature, 516(7530):198-206(2014) [pubmed]

10.1038/nature14046;

curator keyword: Biological, Biomedical

submitter keyword: Mouse, iPSC, stem cells, LC-MS/MS

Peter W Zandstra
contact affiliation	Professor, Institute of Biomaterials & Biomedical Engineering, University of Toronto Canada Research Chair in Stem Cell Bioengineering Terrence Donnelly Centre for Cellular and Biomolecular Research Chief Scientific Officer, Centre for Commercialization of Regenerative Medicine FRSC
contact email	peter.zandstra@utoronto.ca
lab head
Carl White
contact affiliation	University of Toronto
contact email	carl.white@utoronto.ca
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/11/PXD001456

PRIDE project URI

• PRIDE
  1. PXD001456
     1. Label: PRIDE project
     2. Name: Project Grandiose, cell surface protein capture