PXD001390

PXD001390 is an original dataset announced via ProteomeXchange.

Title	Re-analysis of: ‘CSF proteome mapping: Human cerebrospinal fluid LC-MS/MS, Part 2’ (PXD000652) to demonstrate the ProteoAnnotator software for mapping identifications to Ensembl genomes
Description	We have performed a re-analysis of PXD000652 - a human proteome CSF fluid sample, originally queried versus UniProt. We have used our ProteoAnnotator package to re-search the data against Ensembl Human build 76 to demonstrate the capability of the pipeline to perform genome mapping on a large scale.
HostingRepository	PRIDE
AnnounceDate	2014-10-20
AnnouncementXML	Submission_2014-10-20_07:39:43.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD001390
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Fawaz Ghali
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	Oxidation; Gln->pyro-Glu; Trimethyl; Ammonia-loss; Glu->pyro-Glu; Acetyl; Carbamidomethyl
Instrument	LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2014-10-09 03:06:51	ID requested
⏵ 1	2014-10-20 07:39:45	announced

Ghali F, Krishna R, Perkins S, Collins A, Xia D, Wastling J, Jones AR, ProteoAnnotator--open source proteogenomics annotation software supporting PSI standards. Proteomics, 14(23-24):2731-41(2014) [pubmed]

curator keyword: Technical

submitter keyword: ProteoAnnotator,

Andy Jones
contact affiliation	University of Liverpool
contact email	jonesar@liverpool.ac.uk
lab head
Fawaz Ghali
contact affiliation	University of Liverpool
contact email	fghali@liv.ac.uk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/10/PXD001390

PRIDE project URI

• PRIDE
  1. PXD001390
     1. Label: PRIDE project
     2. Name: Re-analysis of: ‘CSF proteome mapping: Human cerebrospinal fluid LC-MS/MS, Part 2’ (PXD000652) to demonstrate the ProteoAnnotator software for mapping identifications to Ensembl genomes