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PXD001361

PXD001361 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleDirect evidence of milk consumption from ancient human dental calculus, northern Europe
DescriptionThis study investigated the consumption of milk products in the archaeological record, utilizing human dental calculus as a reservoir of dietary proteins from archaeological samples from across Eurasia. Protein extraction and generation of tryptic peptides from dental calculus was performed using a filter-aided sample preparation (FASP) protocol, modified for ancient samples, on 92 samples of archaeological dental calculus. Samples were extracted at three laboratories; the Functional Genomics Centre Zürich (FGCZ), the Centre for GeoGenetics at the National History Museum of Denmark, and BioArCh at the University of York. Sample extracts were sequenced (LC-MS/MS) using an LTQ-Orbitrap Velos (FGCZ), a Q-Exactive Hybrid Quadrupole Orbitrap and an LTQ-Orbitrap Elite (Central Proteomics Facility, Target Discovery Institute, Oxford).
HostingRepositoryPRIDE
AnnounceDate2015-02-25
AnnouncementXMLSubmission_2015-02-25_07:52:55.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterJessica Hendy
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListdeamidated residue; monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue; deaminated residue
InstrumentLTQ Orbitrap Velos; Q Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02014-09-26 01:11:43ID requested
12015-02-25 07:52:56announced
Publication List
Warinner C, Hendy J, Speller C, Cappellini E, Fischer R, Trachsel C, Arneborg J, Lynnerup N, Craig OE, Swallow DM, Fotakis A, Christensen RJ, Olsen JV, Liebert A, Montalva N, Fiddyment S, Charlton S, Mackie M, Canci A, Bouwman A, R, ü, hli F, Gilbert MT, Collins MJ, Direct evidence of milk consumption from ancient human dental calculus. Sci Rep, 4():7104(2014) [pubmed]
Keyword List
curator keyword: Metaproteomics, Technical
submitter keyword: Human, Dental Calculus, Dental Plaque, LC-MS/MS, Beta-lactoglobulin
Contact List
Matthew Collins
contact affiliationBioArCh, University of York, UK
contact emailmatthew.collins@york.ac.uk
lab head
Jessica Hendy
contact affiliationUniversity of York
contact emailjessica.hendy@york.ac.uk
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
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