PXD001213

PXD001213 is an original dataset announced via ProteomeXchange.

Title	Tissue Engineered Rat Lung Proteomics
Description	The goal of this project was to develop a method to fully characterize the proteome of native and decellularized rat lungs. In short, we show that chemical digestion is necessary yield the full complement of the insoluble proteins that make up decellularized scaffolds, a step that is generally ignored in the literature, but necessary to attain a representative readout of the tissue proteome
HostingRepository	PRIDE
AnnounceDate	2015-02-20
AnnouncementXML	Submission_2015-02-20_03:55:15.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD001213
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Ryan Hill
SpeciesList	scientific name: Rattus norvegicus (Rat); NCBI TaxID: 10116;
ModificationList	Oxidation; Gln->pyro-Glu; Acetyl; Carbamidomethyl
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2014-08-08 02:55:56	ID requested
⏵ 1	2015-02-20 03:55:16	announced

Hill RC, Calle EA, Dzieciatkowska M, Niklason LE, Hansen KC, Quantification of extracellular matrix proteins from a rat lung scaffold to provide a molecular readout for tissue engineering. Mol Cell Proteomics, 14(4):961-73(2015) [pubmed]

curator keyword: Biomedical

submitter keyword: Rat, Lung, Proteomics, QconCAT, SRM, LC-MS/MS, CNBr

Kirk Hansen
contact affiliation	Biochemistry & Molecular Genetics, University of Colorado-Denver, Anschutz Medical Campus, Aurora, Colorado, USA
contact email	Kirk.Hansen@ucdenver.edu
lab head
Ryan Hill
contact affiliation	Biochemistry and Molecular Genetics
contact email	Ryan.Hill@ucdenver.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/02/PXD001213

PRIDE project URI

• PRIDE
  1. PXD001213
     1. Label: PRIDE project
     2. Name: Tissue Engineered Rat Lung Proteomics