PXD001185 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Colonization state influences the hemocyte proteome in a beneficial squid-vibrio symbiosis |
Description | The squid, Euprymna scolopes, and the luminescent bacterium, Vibrio fischeri, form a highly specific beneficial light organ symbiosis. Not only does the host have to select V. fischeri from the environment, but it must also prevent subsequent colonization by non-symbiotic microorganisms. Host macrophage-like hemocytes are believed to play a role in mediating the symbiosis with V. fischeri. Previous studies have shown that the colonization state of the light organ influences the host’s hemocyte response to the symbiont. To further understand the molecular mechanisms behind this process, two quantitative mass spectrometry-based proteomic techniques, isobaric tags for relative and absolute quantification (iTRAQ) and label-free spectral counting, were used to compare and quantify the adult hemocyte proteomes from colonized (sym) and uncolonized (antibiotic-treated/cured) squid. Overall, iTRAQ allowed for the quantification of 1,024 proteins with 2 or more peptides. Thirty-seven unique proteins were determined to be significantly different between sym and cured hemocytes (p-value < 0.05), with 20 more abundant proteins and 17 less abundant in sym hemocytes. The label-free approach resulted in 1,241 proteins that were identified in all replicates. Of 185 unique proteins present at significantly different amounts in sym hemocytes (as determined by spectral counting), 92 were more abundant and 93 were less abundant. Comparisons between iTRAQ and spectral counting revealed that 30 of the 37 proteins quantified by iTRAQ exhibited similar trends identified by the label-free method. Both proteomic techniques mutually identified 16 proteins that were significantly different between the two groups of hemocytes (p-value <0.05). The presence of V. fischeri in the host light organ influenced the abundance of proteins associated with the cytoskeleton, adhesion, lysosomes, proteolysis, and the innate immune response. These data provide evidence that colonization by V. fischeri alters the hemocyte proteome and reveals proteins that may be important for maintaining host-symbiont specificity. |
HostingRepository | PRIDE |
AnnounceDate | 2014-10-23 |
AnnouncementXML | Submission_2014-10-23_05:00:16.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Tyler Schleicher |
SpeciesList | scientific name: Euprymna scolopes (Hawaiian bobtail squid); NCBI TaxID: 6613; |
ModificationList | carbamoylated residue; iTRAQ4plex-116 reporter+balance reagent acylated residue; S-carboxamidomethyl-L-cysteine; L-cysteine methyl disulfide |
Instrument | Q Exactive; TripleTOF 5600 |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2014-07-30 01:53:39 | ID requested | |
1 | 2014-08-05 02:36:17 | announced | |
⏵ 2 | 2014-10-23 05:00:17 | announced | Updated project metadata. |
Publication List
Schleicher TR, VerBerkmoes NC, Shah M, Nyholm SV, Colonization state influences the hemocyte proteome in a beneficial squid-Vibrio symbiosis. Mol Cell Proteomics, 13(10):2673-86(2014) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: Euprymna scolopes, Vibrio fischeri, symbiosis, hemocytes, iTRAQ, spectral counting, innate immunity |
Contact List
Spencer V. Nyholm |
contact affiliation | Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA |
contact email | spencer.nyholm@uconn.edu |
lab head | |
Tyler Schleicher |
contact affiliation | University of Connecticut |
contact email | tyler.schleicher@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD001185
- Label: PRIDE project
- Name: Colonization state influences the hemocyte proteome in a beneficial squid-vibrio symbiosis