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PXD001165

PXD001165 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleHendra virus infection of bat (Pteropus alecto) and human cells
DescriptionSILAC labeled human kidney cells (293 cells) or bat kidney cells (PakiT03cells)were infected with Hendra virus for 8 or 24 hours and compared to uninfected control cells. Protein identification and quantitation relied on a combination of Uniprot lists of proteins and Proteomics Informed by Transcriptomics (PIT) analysis whereby RNA extracted from the same samples was deep sequenced and the sequencing data was used to construct mRNA from which possible ORFS were inferred and used as a search space by MaxQuant.
HostingRepositoryPRIDE
AnnounceDate2014-11-05
AnnouncementXMLSubmission_2014-11-05_07:22:08.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterDavid Matthews
SpeciesList scientific name: Pteropus alecto (Black flying fox); NCBI TaxID: 9402; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Hendra virus (isolate Horse/Autralia/Hendra/1994); NCBI TaxID: 928303;
ModificationList6x(13)C: 4x(15)N labeled L-arginine; iodoacetamide derivatized residue; 6x(13)C labeled residue
InstrumentLTQ Orbitrap Velos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02014-07-22 06:55:16ID requested
12014-11-05 07:22:09announced
Publication List
Dataset with its publication pending
Keyword List
curator keyword: Biomedical, Biological
submitter keyword: Human Pteropus alecto Hendra virus orbitrap velos
Contact List
David A Matthews
contact affiliationSchool of Cellular and Molecular Medicine, University Walk, Bristol BS8 1TD
contact emaild.a.matthews@bristol.ac.uk
lab head
David Matthews
contact affiliationUniversity of Bristol
contact emaild.a.matthews@bristol.ac.uk
dataset submitter
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Dataset FTP location
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PRIDE project URI
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