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DataSet Summary

  • HostingRepository: PRIDE
  • AnnounceDate: 2014-10-23
  • AnnouncementXML: Submission_2014-10-23_05:00:03.xml
  • DigitalObjectIdentifier: http://dx.doi.org/10.6019/PXD001118
  • ReviewLevel: Peer-reviewed dataset
  • DatasetOrigin: Original data
  • RepositorySupport: Supported dataset by repository
  • PrimarySubmitter: Zuo-Fei Yuan
  • Title: Histione HCD and CID datasets for evaluation of search engines
  • Description: To identify confident spectra from histone peptides containing PTMs, we present a method in which one kind of modification is searched each time. We then combine the identifications of multiple search engines to obtain confident results. We find that two search engines, pFind and Mascot, identify most of the confident results. This study will be beneficial those who are interested in histone proteomics analysis.
  • SpeciesList: scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
  • ModificationList: butanoylated residue; N6: N6; acetylated residue; phosphorylated residue; propanoylated residue; dimethylated residue
  • Instrument: LTQ Orbitrap Velos

Dataset History

VersionDatetimeStatusChangeLog Entry
02014-07-09 02:18:24ID requested
12014-09-01 01:02:21announced
22014-10-23 05:00:04announcedUpdated project metadata.

Publication List

  1. Yuan ZF, Lin S, Molden RC, Garcia BA, Evaluation of proteomic search engines for the analysis of histone modifications. J Proteome Res, 13(10):4470-8(2014) [pubmed]

Keyword List

  1. curator keyword: Biomedical
  2. submitter keyword: histone, proteomics, post-translational modification, data analysis, search engine

Contact List

    Benjamin A. Garcia
    • contact affiliation: Epigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania
    • contact email: bgarci@mail.med.upenn.edu
    • lab head:
    Zuo-Fei Yuan
    • contact affiliation: UPenn
    • contact email: zuoyuan@mail.med.upenn.edu
    • dataset submitter:

Full Dataset Link List

  1. Dataset FTP location
  2. PRIDE project URI
Repository Record List
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