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PXD001118

PXD001118 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleHistione HCD and CID datasets for evaluation of search engines
DescriptionTo identify confident spectra from histone peptides containing PTMs, we present a method in which one kind of modification is searched each time. We then combine the identifications of multiple search engines to obtain confident results. We find that two search engines, pFind and Mascot, identify most of the confident results. This study will be beneficial those who are interested in histone proteomics analysis.
HostingRepositoryPRIDE
AnnounceDate2014-10-23
AnnouncementXMLSubmission_2014-10-23_05:00:03.xml
DigitalObjectIdentifierhttp://dx.doi.org/10.6019/PXD001118
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterZuo-Fei Yuan
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListbutanoylated residue; N6: N6; acetylated residue; phosphorylated residue; propanoylated residue; dimethylated residue
InstrumentLTQ Orbitrap Velos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02014-07-09 02:18:24ID requested
12014-09-01 01:02:21announced
22014-10-23 05:00:04announcedUpdated project metadata.
Publication List
Yuan ZF, Lin S, Molden RC, Garcia BA, Evaluation of proteomic search engines for the analysis of histone modifications. J Proteome Res, 13(10):4470-8(2014) [pubmed]
Keyword List
curator keyword: Biomedical
submitter keyword: histone, proteomics, post-translational modification, data analysis, search engine
Contact List
Benjamin A. Garcia
contact affiliationEpigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania
contact emailbgarci@mail.med.upenn.edu
lab head
Zuo-Fei Yuan
contact affiliationUPenn
contact emailzuoyuan@mail.med.upenn.edu
dataset submitter
Full Dataset Link List
Dataset FTP location
PRIDE project URI
Repository Record List
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