PXD001077

PXD001077 is an original dataset announced via ProteomeXchange.

Title	PeptideShaker
Description	Mass spectrometry-based proteomics data, obtained experimentally or via public repositories, remains challenging to analyze. This challenge is particularly felt when re-analysing or re-purposing public data sets, endeavours that otherwise hold great potential. PeptideShaker is an open source system that greatly simplifies the interpretation and dissemination of proteomics data, and that automates the re-analysis of public data, thus completing the proteomics data cycle (http://peptide-shaker.googlecode.com).
HostingRepository	PRIDE
AnnounceDate	2014-07-24
AnnouncementXML	Submission_2014-07-24_05:20:02.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD001077
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Marc Vaudel
SpeciesList	scientific name: Pyrococcus furiosus; NCBI TaxID: 2261;
ModificationList	Ammonia-loss: -17.026549; Oxidation: 15.994915; Phospho: 79.966331; Carbamidomethyl: 57.021464; Acetyl: 42.010565; Glu->pyro-Glu: -18.010565
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2014-06-23 01:23:12	ID requested
1	2014-06-24 02:23:46	announced
⏵ 2	2014-07-24 05:20:03	announced	Updated project metadata.

Vaudel M, Burkhart JM, Breiter D, Zahedi RP, Sickmann A, Martens L, A complex standard for protein identification, designed by evolution. J Proteome Res, 11(10):5065-71(2012) [pubmed]

curator keyword: Technical

submitter keyword: Pyrococcus Furiosus

Lennart Martens
contact affiliation	Department of Medical Protein Research, VIB, Ghent, Belgium Department of Biochemistry, Ghent University, Ghent, Belgium
contact email	lennart.martens@UGent.be
lab head
Marc Vaudel
contact affiliation	PROBE Dept of Biomedicine
contact email	marc.vaudel@biomed.uib.no
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD001077

PRIDE project URI

• PRIDE
  1. PXD001077
     1. Label: PRIDE project
     2. Name: PeptideShaker