PXD001042

PXD001042 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteogenomic analysis of Toxoplasma gondii (comparing genome releases 6 and 10) to demonstrate the performance of the ProteoAnnotator software
Description	Testing the performance of the ProteoAnnotator software via comparing analysis of annotating the Toxoplasma gondii gene models 6 and 10
HostingRepository	PRIDE
AnnounceDate	2014-10-20
AnnouncementXML	Submission_2014-10-20_07:19:11.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD001042
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Fawaz Ghali
SpeciesList	scientific name: Toxoplasma gondii ME49; NCBI TaxID: 508771;
ModificationList	Oxidation; Gln->pyro-Glu; Trimethyl; Ammonia-loss; Glu->pyro-Glu; Acetyl; Carbamidomethyl
Instrument	LTQ Orbitrap

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2014-06-06 08:03:18	ID requested
⏵ 1	2014-10-20 07:19:12	announced

Publication List

Ghali F, Krishna R, Perkins S, Collins A, Xia D, Wastling J, Jones AR, ProteoAnnotator--open source proteogenomics annotation software supporting PSI standards. Proteomics, 14(23-24):2731-41(2014) [pubmed]

Ghali F, Krishna R, Perkins S, Collins A, Xia D, Wastling J, Jones AR, ProteoAnnotator--open source proteogenomics annotation software supporting PSI standards. Proteomics, 14(23-24):2731-41(2014) [pubmed]

Keyword List

curator keyword: Technical
submitter keyword: ProteoAnnotator, Toxoplasma gondii, Orbitrap, proteogenomics, annotation

curator keyword: Technical

submitter keyword: ProteoAnnotator, Toxoplasma gondii, Orbitrap, proteogenomics, annotation

Contact List

Andrew R. Jones
contact affiliation	Institute of Integrative Biology, University of Liverpool, Liverpool, UK.
contact email	andrew.jones@liv.ac.uk
lab head
Fawaz Ghali
contact affiliation	University of Liverpool
contact email	fghali@liv.ac.uk
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/10/PXD001042
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/10/PXD001042

PRIDE project URI

Repository Record List

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