PXD001037

PXD001037 is an original dataset announced via ProteomeXchange.

Title	Metaprotemic analysis of groundwaters from a coal tar-contaminated aquifer in South Glens Falls, NY: MW37, Shotgun 2
Description	Deciphering the in situ activities of microorganisms is essential for understanding the biogeochemical processes occurring in complex environments. Here we used environmental metaproteomics to obtain information about the identity and activity of subsurface microbial populations in coal-tar-contaminated groundwater. The present study reports metaproteomic data showing high representation of Candidatus Methylomirabilis oxyfera in our study site’s subsurface microbial community. In addition, eight of the nine proteins of the n-damo pathway were identified—indicating that n-damo is an active process occurring in situ in this habitat.
HostingRepository	PRIDE
AnnounceDate	2022-02-22
AnnouncementXML	Submission_2022-02-22_03:40:04.952.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Buck Hanson
SpeciesList	scientific name: prokaryotic environmental samples; NCBI TaxID: 81490;
ModificationList	monohydroxylated residue; deamidated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2014-06-05 05:07:32	ID requested
⏵ 1	2022-02-22 03:40:05	announced

Hanson BT, Madsen EL, In situ expression of nitrite-dependent anaerobic methane oxidation proteins by Candidatus Methylomirabilis oxyfera co-occurring with expressed anammox proteins in a contaminated aquifer. Environ Microbiol Rep, 7(2):252-64(2015) [pubmed]

curator keyword: Metaproteomics, Biological

submitter keyword: in-situ gene expression

microbial ecology

metaproteomics

Candidatus Methylomirabilis oxyfera

Eugene Lewis Madsen
contact affiliation	Cornell University Department of Microbiology
contact email	elm3@cornell.edu
lab head
Buck Hanson
contact affiliation	Cornell University
contact email	buck.hanson@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD001037

PRIDE project URI

• PRIDE
  1. PXD001037
     1. Label: PRIDE project
     2. Name: Metaprotemic analysis of groundwaters from a coal tar-contaminated aquifer in South Glens Falls, NY: MW37, Shotgun 2