PXD001029

PXD001029 is an original dataset announced via ProteomeXchange.

Title	Species identification of archaeological skin objects from Danish bogs
Description	Denmark has an extraordinarily large and well-preserved collection of archaeological skin garments found in peat bogs, dated to approximately 920 BC - AD 775. These objects provide not only the possibility to study prehistoric skin costume and technologies, but also to investigate the animal species used for production of skin garments. Until recently, species identification of archaeological skin was mainly performed by light and scanning electron microscopy or analysis of ancient DNA. However, the efficacy of these methods can be limited due to the harsh, mostly acidic environment of peat bogs leading to morphological and molecular degradation within the samples. We compared species assignment results of twelve archaeological skin samples from Danish bogs using Mass Spectrometry (MS)-based peptide sequencing, against results obtained using light and scanning electron microscopy
HostingRepository	PRIDE
AnnounceDate	2014-07-29
AnnouncementXML	Submission_2014-09-29_02:29:13.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Enrico Cappellini
SpeciesList	scientific name: Capra hircus (Goat); NCBI TaxID: 9925; scientific name: Bos taurus (Bovine); NCBI TaxID: 9913; scientific name: Ovis aries (Sheep); NCBI TaxID: 9940;
ModificationList	deamidated residue; 2-pyrrolidone-5-carboxylic acid (Glu); L-methionine sulfone; N6-acetyl-L-lysine; iodoacetamide derivatized residue; Oxidation of proline (to glutamic acid); 2-pyrrolidone-5-carboxylic acid (Gln)
Instrument	Q Exactive; LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2014-06-03 02:03:24	ID requested
1	2014-07-29 00:27:31	announced
⏵ 2	2014-09-29 02:29:13	announced	Updated publication reference for PubMed record(s): 25260035.

Brandt L Ø, Schmidt AL, Mannering U, Sarret M, Kelstrup CD, Olsen JV, Cappellini E, Species identification of archaeological skin objects from Danish bogs: comparison between mass spectrometry-based peptide sequencing and microscopy-based methods. PLoS One, 9(9):e106875(2014) [pubmed]

curator keyword: Technical

submitter keyword: ancient proteins, archaeological skin objects from bogs, archaeology

Enrico Cappellini
contact affiliation	Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark
contact email	ecappellini@gmail.com
lab head
Enrico Cappellini
contact affiliation	Natural History Museum of Denmark
contact email	ecappellini@googlemail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/07/PXD001029

PRIDE project URI

• PRIDE
  1. PXD001029
     1. Label: PRIDE project
     2. Name: Species identification of archaeological skin objects from Danish bogs