PXD001002

PXD001002 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Egg yolk proteins G. fossarum
Description	We aimed to specifically identify the major egg yolk proteins (i.e. vitellogenin) in the amphipod Gammarus fossarum, a sentinel species in freshwater risk assessment. Vitellogenin production in female is vital for the embryonic development and its production in male organism is commonly employed as a biomarker of exposition to xenoestrogens in fish. We performed a shotgun proteomics analysis on embryos and ovaries at different stages of their development. The proteome dynamics over the cycle was analyzed to correlate on the first hand proteins which are accumulating along vitellogenesis and on the other hand, proteins with decrease amounts long embryogenesis. This information led to the proposal of putative novel VTG candidates. Our data provides the first large scale molecular description of a crustacean reproductive cycle, while our temporal analysis evidenced seven candidates proteins as “true vitellogenin” in G. fossarum.
HostingRepository	PRIDE
AnnounceDate	2016-07-15
AnnouncementXML	Submission_2016-07-15_08:51:40.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD001002
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Jean ARMENGAUD
SpeciesList	scientific name: Gammarus fossarum; NCBI TaxID: 52638;
ModificationList	Oxidation
Instrument	LTQ Orbitrap Elite

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2014-05-23 03:35:29	ID requested
⏵ 1	2016-07-15 08:51:45	announced

Publication List

Trapp J, Armengaud J, Gaillard JC, Pible O, Chaumot A, Geffard O, High-throughput proteome dynamics for discovery of key proteins in sentinel species: Unsuspected vitellogenins diversity in the crustacean Gammarus fossarum. J Proteomics, 146():207-14(2016) [pubmed]

Trapp J, Armengaud J, Gaillard JC, Pible O, Chaumot A, Geffard O, High-throughput proteome dynamics for discovery of key proteins in sentinel species: Unsuspected vitellogenins diversity in the crustacean Gammarus fossarum. J Proteomics, 146():207-14(2016) [pubmed]

Keyword List

curator keyword: Biological
submitter keyword: Amphipod, reproduction, vitellogenin, proteogenomics

curator keyword: Biological

submitter keyword: Amphipod, reproduction, vitellogenin, proteogenomics

Contact List

Jean Armengaud
contact affiliation	CEA-Marcoule Institute of Environnemental Biology and Biotechnology Department of Biochemistry and Nuclear Toxicology Biochemistry of Perturbed Systems Laboratory France
contact email	jean.armengaud@cea.fr
lab head
Jean ARMENGAUD
contact affiliation	SBTN
contact email	jean.armengaud@cea.fr
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/07/PXD001002
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/07/PXD001002

PRIDE project URI

Repository Record List

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