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PXD000993

DataSet Summary

  • HostingRepository: PRIDE
  • AnnounceDate: 2014-05-22
  • AnnouncementXML: Submission_2014-05-22_02:38:52.xml
  • DigitalObjectIdentifier:
  • ReviewLevel: Peer-reviewed dataset
  • DatasetOrigin: Original data
  • RepositorySupport: Unsupported dataset by repository
  • PrimarySubmitter: Matthias Fischer
  • Title: Virion proteome of Cafeteria roenbergensis virus strain BV-PW1
  • Description: This project describes the protein composition of the Cafeteria roenbergensis virus (CroV) particle, a giant marine DNA virus that infects the heterotrophic nanoflagellate microeukaryote C. roenbergensis. CroV is a member of the Nucleo-Cytoplasmic Large DNA Virus clade and related to Acanthamoeba polyphaga mimivirus. CroV possesses a DNA genome of ~730 kilobase pairs that encodes 544 predicted proteins. We analyzed the protein composition of purified CroV particles by liquid chromatography - tandem mass spectrometry (LC-MS/MS) and identified 141 virion-associated CroV proteins. Predicted functions could be assigned to 37% of these proteins, which include structural proteins as well as enzymes for transcription, DNA repair, redox reactions and protein modification. Homologs of 36 CroV virion proteins have previously been found in the virion of Acanthamoeba polyphaga mimivirus. This study shows that giant DNA virus particles contain more than one hundred viral proteins that include specific enzymatic functions.
  • SpeciesList: scientific name: Cafeteria roenbergensis; NCBI TaxID: 33653;
  • ModificationList: monohydroxylated residue; iodoacetamide derivatized residue
  • Instrument: LTQ Orbitrap

Dataset History

VersionDatetimeStatusChangeLog Entry
02014-05-21 02:50:00ID requested
12014-05-22 02:38:53announced

Publication List

  1. Dataset with its publication pending

Keyword List

  1. submitter keyword: LC-MSMS, virion proteome, CroV, capsid, giant virus, virophage

Contact List

    Leonard Foster
    • contact affiliation: Biochemistry & Molecular Biology, University of British Columbia, Vancouver, BC, Canada
    • contact email: foster@chibi.ubc.ca
    • lab head:
    Matthias Fischer
    • contact affiliation: Max Planck Institute for Medical Research, Heidelberg, Germany
    • contact email: mfischer@mpimf-heidelberg.mpg.de
    • dataset submitter:

Full Dataset Link List

  1. Dataset FTP location
  2. PRIDE project URI
Repository Record List
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