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PXD000954

DataSet Summary

  • HostingRepository: PRIDE
  • AnnounceDate: 2014-10-23
  • AnnouncementXML: Submission_2015-09-23_05:52:25.xml
  • DigitalObjectIdentifier:
  • ReviewLevel: Peer-reviewed dataset
  • DatasetOrigin: Original data
  • RepositorySupport: Unsupported dataset by repository
  • PrimarySubmitter: George Rosenberger
  • Title: The Pan-Human Library: A repository of assays to quantify 10 000 proteins by SWATH-MS / SWATH-MS validation data
  • Description: The “Pan-Human Library” is a compendium of highly specific assays covering more than 10 000 human proteins and enabling their targeted analysis in SWATH-MS datasets acquired from research or clinical specimens. This dataset contains validation SWATH-MS data and OpenSWATH results of whole cell lysates of HeLa (guot_L130330_005_SW, guot_L130330_006_SW, guot_L130330_007_SW) and U2OS cells (gout_L130330_013_SW, gout_L130330_014_SW, gout_L130330_015_SW). Further, the combined assay library (phl004_s32.csv) and the sample-specific assay libraries (phl004_sshela_s32.csv, phl004_ssu2os.csv) used for the analysis are provided.
  • SpeciesList: scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
  • ModificationList: No PTMs are included in the dataset
  • Instrument: TripleTOF 5600

Dataset History

VersionDatetimeStatusChangeLog Entry
02014-05-02 07:08:38ID requested
12014-08-08 05:42:06announced
22014-10-23 03:38:56announcedUpdated project metadata.
32015-09-23 05:52:26announcedUpdated project metadata.

Publication List

  1. Rosenberger G, Koh CC, Guo T, Röst HL, Kouvonen P, Collins BC, Heusel M, Liu Y, Caron E, Vichalkovski A, Faini M, Schubert OT, Faridi P, Ebhardt HA, Matondo M, Lam H, Bader SL, Campbell DS, Deutsch EW, Moritz RL, Tate S, Aebersold R, A repository of assays to quantify 10,000 human proteins by SWATH-MS. Sci Data, 1():140031(2014) [pubmed]

Keyword List

  1. curator keyword: Biological, Technical
  2. submitter keyword: Human, SWATH-MS, SWATH, Targeted Proteomics, Pan-Human Library, OpenSWATH

Contact List

    Ruedi Aebersold
    • contact affiliation: Institute of Molecular Systems Biology ETH Zurich
    • contact email: aebersold@imsb.biol.ethz.ch
    • lab head:
    George Rosenberger
    • contact affiliation: Institute of Molecular Systems Biology ETH Zurich
    • contact email: rosenberger@imsb.biol.ethz.ch
    • dataset submitter:

Full Dataset Link List

  1. Dataset FTP location
  2. PRIDE project URI
Repository Record List
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