PXD000868 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Large-scale phosphoproteome analysis in seedling leaves of Brachypodium distachyon L |
Description | In this study, we carried out the first large-scale phosphoproteome analysis of seedling leaves in Brachypodium accession Bd21 using TiO2 microcolumns combined with liquid chromatography-tandem mass spectrometry (LC-MS/MS) and MaxQuant software. A total, 1,470 phosphorylation sites in 950 phosphoproteins were identified. Of the 950 phosphoproteins identified, 127 contained 3 to 8 phosphorylation sites. The phosphoproteins and phosphosites identified in our study expanded our knowledge of protein phosphorylation modification in plants, especially in monocot. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:20:17.252.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Dong-Wen Lv |
SpeciesList | scientific name: Brachypodium distachyon (Purple false brome) (Trachynia distachya); NCBI TaxID: 15368; |
ModificationList | phosphorylated residue; acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2014-04-01 07:33:22 | ID requested | |
1 | 2016-07-08 17:18:14 | announced | |
⏵ 2 | 2024-10-22 04:20:19 | announced | 2024-10-22: Updated project metadata. |
Publication List
10.1186/1471-2164-15-375; |
Lv DW, Li X, Zhang M, Gu AQ, Zhen SM, Wang C, Li XH, Yan YM, Large-scale phosphoproteome analysis in seedling leaves of Brachypodium distachyon L. BMC Genomics, 15(1):375(2014) [pubmed] |
Keyword List
submitter keyword: phosphoproteome, protein kinases, leaf, transcription factors,Bd21, phosphorylation motif |
Contact List
Yue-Ming Yan |
contact affiliation | College of Life Science, Capital Normal University, Beijing 100048, China |
contact email | yanym@cnu.edu.cn |
lab head | |
Dong-Wen Lv |
contact affiliation | College of Life Sciences |
contact email | dw.lv@hotmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/07/PXD000868 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD000868
- Label: PRIDE project
- Name: Large-scale phosphoproteome analysis in seedling leaves of Brachypodium distachyon L