PXD000771

PXD000771 is an original dataset announced via ProteomeXchange.

Title	Proteomic characterisation of the salt gland-enriched tissues of the mangrove tree species Avicennia officinalis
Description	Plant salt glands are nature’s desalination devices that harbour potentially useful information pertaining to salt and water transport during secretion. As part of the program toward deciphering secretion mechanisms in salt glands, we adopted a shotgun approach to look into the proteome of salt-gland enriched tissues of the mangrove tree species Avicennia officinalis. To achieve this, we isolated the adaxial epidermal peels (which harbour the salt glands), and separated them from the mesophyll tissues of the leaves. Three biological replicates were prepared and total proteins were extracted from these tissues. Proteins that were found to be unique in salt gland-enriched tissues were obtained by eliminating proteins found in the mesophyll tissues. The proteins that are uniquely present in salt gland-enriched tissues were then selected and categorized by GO analysis.
HostingRepository	PRIDE
AnnounceDate	2015-07-24
AnnouncementXML	Submission_2015-07-24_01:56:24.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Qingsong Lin
SpeciesList	scientific name: Avicennia; NCBI TaxID: 41377;
ModificationList	monohydroxylated residue; acetylated residue; methylthiolated residue
Instrument	TripleTOF 5600

Revision	Datetime	Status	ChangeLog Entry
0	2014-02-20 08:09:49	ID requested
1	2015-07-22 04:21:05	announced
⏵ 2	2015-07-24 01:56:25	announced	Updated project metadata.

Tan WK, Lim TK, Loh CS, Kumar P, Lin Q, Proteomic Characterisation of the Salt Gland-Enriched Tissues of the Mangrove Tree Species Avicennia officinalis. PLoS One, 10(7):e0133386(2015) [pubmed]

curator keyword: Biological

submitter keyword: Avicennia, mangrove proteomics, ProteinPilot, salt gland-enriched tissues, shotgun, 2DLC/MS/MS

Qingsong Lin
contact affiliation	Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, Singapore 117543.
contact email	dbslinqs@nus.edu.sg
lab head
Qingsong Lin
contact affiliation	Biological Sciences
contact email	dbslinqs@nus.edu.sg
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/07/PXD000771

PRIDE project URI

• PRIDE
  1. PXD000771
     1. Label: PRIDE project
     2. Name: Proteomic characterisation of the salt gland-enriched tissues of the mangrove tree species Avicennia officinalis