PXD000730

PXD000730 is an original dataset announced via ProteomeXchange.

Title	Drosophila melanogaster exp 132
Description	PeptideRank is an approach that uses a rank-based algorithm for peptide detectability prediction from shotgun proteomics data. The best performance is achieved when it is trained on organism-specific shotgun proteomics datasets. The Drosophila shotgun proteomics data presented here have been used amongst others to train and validate PeptideRank.
HostingRepository	PRIDE
AnnounceDate	2019-06-04
AnnouncementXML	Submission_2019-06-04_08:17:26.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Sandra Goetze
SpeciesList	scientific name: Drosophila melanogaster (Fruit fly); NCBI TaxID: 7227;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	LTQ

Revision	Datetime	Status	ChangeLog Entry
0	2014-01-31 03:53:51	ID requested
⏵ 1	2019-06-04 08:17:27	announced

Qeli E, Omasits U, Goetze S, Stekhoven DJ, Frey JE, Basler K, Wollscheid B, Brunner E, Ahrens CH, Improved prediction of peptide detectability for targeted proteomics using a rank-based algorithm and organism-specific data. J Proteomics, 108():269-83(2014) [pubmed]

ProteomeXchange project tag: PRIME-XS Project

curator keyword: Technical

submitter keyword: Drosophila melanogaster, KC167 cells, nuclear and cytoplasmic fraction,

Erich Brunner
contact affiliation	Institute of Molecular Life Sciences, University of Zurich, Switzerland
contact email	erich.brunner@imls.uzh.ch
lab head
Sandra Goetze
contact affiliation	Institute of Molecular Systems Biology Swiss Federal Institute of Technology Zurich (ETH) Auguste-Piccard.Hof 1 CH-8093 Zürich
contact email	sgoetze@ethz.ch
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD000730

PRIDE project URI

• PRIDE
  1. PXD000730
     1. Label: PRIDE project
     2. Name: Drosophila melanogaster exp 132