PXD000726 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Drosophila melanogaster exp 135 |
Description | PeptideRank is an approach that uses a rank-based algorithm for peptide detectability prediction from shotgun proteomics data. The best performance is achieved when it is trained on organism-specific shotgun proteomics datasets. The Drosophila shotgun proteomics data presented here have been used amongst others to train and validate PeptideRank. |
HostingRepository | PRIDE |
AnnounceDate | 2019-06-04 |
AnnouncementXML | Submission_2019-06-04_08:19:42.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Sandra Goetze |
SpeciesList | scientific name: Drosophila melanogaster (Fruit fly); NCBI TaxID: 7227; |
ModificationList | monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | LTQ |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2014-01-31 02:29:12 | ID requested | |
⏵ 1 | 2019-06-04 08:19:43 | announced | |
Publication List
Qeli E, Omasits U, Goetze S, Stekhoven DJ, Frey JE, Basler K, Wollscheid B, Brunner E, Ahrens CH, Improved prediction of peptide detectability for targeted proteomics using a rank-based algorithm and organism-specific data. J Proteomics, 108():269-83(2014) [pubmed] |
Keyword List
ProteomeXchange project tag: PRIME-XS Project |
curator keyword: Technical |
submitter keyword: Drosophila melanogaster, KC167 cells, nuclear and cytoplasmic fraction, OGE |
Contact List
Erich Brunner |
contact affiliation | Institute of Molecular Life Sciences University of Zurich 8057 Zurich Switzerland |
contact email | erich.brunner@imls.uzh.ch |
lab head | |
Sandra Goetze |
contact affiliation | Institute of Molecular Systems Biology Swiss Federal Institute of Technology Zurich (ETH) Auguste-Piccard.Hof 1 CH-8093 Zürich |
contact email | sgoetze@ethz.ch |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD000726 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD000726
- Label: PRIDE project
- Name: Drosophila melanogaster exp 135