PXD000710

PXD000710 is an original dataset announced via ProteomeXchange.

Title	Proteogenomics of Venturia pirina
Description	This dataset relates to a proteogenomic analysis for Venturia pirina, a fungus that causes scab disease on European pear (Pyrus communis). V. pirina is host specific and infection is thought to be mediated by small, secreted effector proteins. To focus on these effectors we analysed extracts from V. pirina grown in vitro, on cellophane sheets, that mimics the growth habit in infected leaves. LC-MS/MS data was queried against a protein database generated by combining in-silico predicted transcripts with six-frame translations of a whole genome sequence for V. pirina.
HostingRepository	PRIDE
AnnounceDate	2014-07-24
AnnouncementXML	Submission_2014-07-24_05:16:56.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD000710
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Ira Cooke
SpeciesList	scientific name: Venturia pirina; NCBI TaxID: 86260;
ModificationList	Oxidation; Pyro-carbamidomethyl; Gln->pyro-Glu; Delta:H(6)C(3)O(1); Amidine; Propyl; Guanidinyl; Carboxymethyl; Delta:H(4)C(3)O(1); Delta:H(4)C(3); Glu->pyro-Glu; Acetyl; Carbamidomethyl
Instrument	ultraflex; Bruker Daltonics HCT Series; LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2014-01-23 05:56:09	ID requested
1	2014-07-02 07:51:41	announced
⏵ 2	2014-07-24 05:16:57	announced	Updated project metadata.

Cooke IR, Jones D, Bowen JK, Deng C, Faou P, Hall NE, Jayachandran V, Liem M, Taranto AP, Plummer KM, Mathivanan S, Proteogenomic analysis of the Venturia pirina (Pear Scab Fungus) secretome reveals potential effectors. J Proteome Res, 13(8):3635-44(2014) [pubmed]

curator keyword: Biological

submitter keyword: Venturia pirina, Proteogenomics, Effectors, Ave1, LC-MSMS

Suresh Mathivanan
contact affiliation	La Trobe University
contact email	S.Mathivanan@latrobe.edu.au
lab head
Ira Cooke
contact affiliation	La Trobe University
contact email	i.cooke@latrobe.edu.au
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/07/PXD000710

PRIDE project URI

• PRIDE
  1. PXD000710
     1. Label: PRIDE project
     2. Name: Proteogenomics of Venturia pirina