PXD000654

PXD000654 is an original dataset announced via ProteomeXchange.

Title	CSF proteome mapping: Human cerebrospinal fluid LC-MS/MS, Part 4
Description	1.6 mL CSF from a pool of 21 neurologically healthy donors was separated into a bound and a depleted fraction using a MARS Hu-14 column. This experiment represents the depleted fraction. Sample was in-solution trypsin digested and resulting peptides were fractionated into 66 fractions by mixed-mode reversed phase anion exchange (MM(RP-AX) using a Promix MP column. Each fraction was analyzed separately by LC-MS/MS on an Orbitrap Velos Pro mass spectrometer. Resulting data was searched using SeachGui, summarized in PeptideShaker and exported to the CSF-PR.
HostingRepository	PRIDE
AnnounceDate	2014-10-23
AnnouncementXML	Submission_2014-10-23_02:47:50.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD000654
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Astrid Guldbrandsen
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	2-pyrrolidone-5-carboxylic acid (Glu): -18.010565; acetylated residue: 42.010565; iodoacetamide derivatized amino-terminal residue: 57.021464; 2-pyrrolidone-5-carboxylic acid (Gln): -17.026549; monohydroxylated lysine: 15.994915
Instrument	LTQ Orbitrap; instrument model: LTQ-Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2013-12-18 05:58:29	ID requested
1	2014-08-04 08:26:03	announced
⏵ 2	2014-10-23 02:47:51	announced	Updated project metadata.

Guldbrandsen A, Vethe H, Farag Y, Oveland E, Garberg H, Berle M, Myhr KM, Opsahl JA, Barsnes H, Berven FS, In-depth characterization of the cerebrospinal fluid (CSF) proteome displayed through the CSF proteome resource (CSF-PR). Mol Cell Proteomics, 13(11):3152-63(2014) [pubmed]

curator keyword: Biomedical

submitter keyword: Cerebrospinal fluid, Homo Sapiens, LC-MS/MS

Astrid Guldbrandsen
contact affiliation	PROBE
contact email	astrid.guldbrandsen@biomed.uib.no
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/08/PXD000654

PRIDE project URI

• PRIDE
  1. PXD000654
     1. Label: PRIDE project
     2. Name: CSF proteome mapping: Human cerebrospinal fluid LC-MS/MS, Part 4