PXD000510

PXD000510 is an original dataset announced via ProteomeXchange.

Title	Synechococcus elongatus PCC7942 proteome's cyclic rhythm by LC-MSMS
Description	To uncover the variation in protein abundances during 48 hours under light and dark cycles (12:12-hours), we used quantitative proteomics, with TMT 6-plex isobaric labeling. We queried the S. elongatus proteome at ten different time points spanning a single 24 hour period, leading to 20 time points over the full 48 hour period.
HostingRepository	PRIDE
AnnounceDate	2014-07-24
AnnouncementXML	Submission_2014-07-24_05:16:28.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD000510
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Ana C. Guerreiro
SpeciesList	scientific name: Synechococcus elongatus (strain PCC 7942) (Anacystis nidulans R2); NCBI TaxID: 1140;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue; TMT6plex-126 reporter+balance reagent acylated residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2013-10-11 01:24:50	ID requested
1	2014-04-02 01:44:32	announced
⏵ 2	2014-07-24 05:16:29	announced	Updated project metadata.

Guerreiro AC, Benevento M, Lehmann R, van Breukelen B, Post H, Giansanti P, Maarten Altelaar AF, Axmann IM, Heck AJ, Daily rhythms in the cyanobacterium synechococcus elongatus probed by high-resolution mass spectrometry-based proteomics reveals a small defined set of cyclic proteins. Mol Cell Proteomics, 13(8):2042-55(2014) [pubmed]

ProteomeXchange project tag: PRIME-XS Project

curator keyword: Biological, Highlighted

submitter keyword: Synechococcus elongatus PCC7942, circadian clock, TMT 6-plex, LC-MSMS

Albert J.R. Heck
contact affiliation	Biomolecular Mass Spectrometry and Proteomics, Utrecht Institute for Pharmaceutical Sciences and Bijvoet Centre for Biomolecular Research, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands
contact email	a.j.r.heck@uu.nl
lab head
Ana C. Guerreiro
contact affiliation	Biomolecular Mass Spectrometry and Proteomics Laboratory, Utrecht University, Utrecht, The Netherlands
contact email	a.c.leiteguerreiro@uu.nl
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/04/PXD000510

PRIDE project URI

• PRIDE
  1. PXD000510
     1. Label: PRIDE project
     2. Name: Synechococcus elongatus PCC7942 proteome's cyclic rhythm by LC-MSMS