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PXD000449

PXD000449 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleChr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. CCD18 Cell line.
DescriptionThe Chromosome 16 Consortium is integrated in the Human Proteome Project that aims to develop an entire map of the proteins encoded by the human genome following a gene-centric strategy (C-HPP) to make progress in the understanding of human biology in health and disease (B/D-HPP). To do this study four human cell lines were selected, MCF7 epithelial cells, CCD18 colon fibroblasts, Ramos and Jurkat B and T lymphocytes respectively. In particular, this subset includes all the data regarding the CCD18 cell line. 6 laboratories contributed to compile all the reported data.
HostingRepositoryPRIDE
AnnounceDate2013-09-06
AnnouncementXMLSubmission_2013-09-06_01:25:32.xml
DigitalObjectIdentifierhttp://dx.doi.org/10.6019/PXD000449
ReviewLevelNon peer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterAlberto Medina-Aunon
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListiodoacetamide derivatized residue; fragment neutral loss: 0.0; monohydroxylated residue; deaminated residue; fragment neutral loss: 63.998285; acetylated residue
Instrumentdissociation method; collision gas; collision gas; dissociation method
Dataset History
RevisionDatetimeStatusChangeLog Entry
02013-09-04 05:41:03ID requested
12013-09-06 01:25:32announced
12013-11-22 01:25:04announced
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: HPP,MIAPE,Networking,Chromosome centric
Contact List
Marta Mendes
contact attributeDepartment:Medicina molecular - Proteomica Funcional Position:researcher Address:Ramiro de Maeztu, 9 e-mail:m.mendes@cib.csic.es Telephone:+34 91 837 31 12 ext 4364
contact affiliationCentro de Investigaciones Biologicas
contact emailm.mendes@cib.csic.es
Alberto Medina-Aunon
contact affiliationCentro Nacional de Biotecnologia, CSIC, Madrid, Spain.
contact emailjamedina@cnb.csic.es
Joan Villanueva
contact attributeDepartment:LP-CSIC/UAB Position:lab personnel Address:Facultat de Medicina Edifici M2, Despatx M2-002.A Universitat Autònoma de Barcelona 08193 Barcelona (Catalunya, España) e-mail:joavilrib@gmail.com Telephone:935814912
contact affiliationIIBB
contact emailjoavilrib@gmail.com
Kerman Aloria
contact attributeDepartment:Proteomics Core facility e-mail:kerman.aloria@ehu.es
contact affiliationUniversity of the Basque Country
contact emailkerman.aloria@ehu.es
Manuel Sánchez del Pino
contact attributeDepartment:Fibroblastos de colon Position:researcher Address:Dr Moliner 50, 46100 Burjassot Valencia e-mail:sandelpi@uv.es Telephone:96-3543464
contact affiliationUV
contact emailsandelpi@uv.es
Severine Gharbi
contact attributeDepartment:Proteomics Unit Position:researcher e-mail:sgharbi@cnb.csic.es
contact affiliationCNB-CSIC
contact emailsgharbi@cnb.csic.es
Eliandre De Oliveira
contact attributeDepartment:Proteomics Platform Position:researcher Address:Plataforma de Proteòmica PCB - Edifici Clúster Baldiri Reixac, 10 08028 Barcelona Tel 93 403 46 53 Fax 93 403 72 06 pproteomica@pcb.ub.es http://www.pcb.ub.cat/plataforma/proteomica e-mail:eoliveira@pcb.ub.es Telephone:934037206
contact affiliationPCB
contact emailpproteomica@pcb.ub.es
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