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PXD000442-1

PXD000442 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleChr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. MCF7 Cell line.
DescriptionThe Chromosome 16 Consortium is integrated in the Human Proteome Project that aims to develop an entire map of the proteins encoded by the human genome following a gene-centric strategy (C-HPP) to make progress in the understanding of human biology in health and disease (B/D-HPP). To do this study four human cell lines were selected, MCF7 epithelial cells, CCD18 colon fibroblasts, Ramos and Jurkat B and T lymphocytes respectively. In particular, this subset includes all the data regarding the MCF7 cell line. 6 laboratories contributed to compile all the reported data.
HostingRepositoryPRIDE
AnnounceDate2013-09-05
AnnouncementXMLSubmission_2013-09-04_20:00:23.xml
DigitalObjectIdentifierhttps://dx.doi.org/10.6019/PXD000442
ReviewLevelNon peer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterAlberto Medina-Aunon
SpeciesList scientific name: Homo Sapiens; NCBI TaxID: 9606; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListiodoacetamide derivatized residue; fragment neutral loss: 0.0; monohydroxylated residue; fragment neutral loss: 63.998285; deaminated residue; acetylated residue
Instrumentdissociation method; dissociation method; collision gas; collision gas; dissociation method
Dataset History
RevisionDatetimeStatusChangeLog Entry
02013-09-02 07:27:14ID requested
12013-09-04 20:00:23announced
12013-11-19 10:09:18announced
22017-06-21 00:30:41announcedUpdated project metadata.
32017-10-24 00:13:17announcedUpdated project metadata.
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: HPP,MIAPE,Networking,Chromosome centric
Contact List
Carmen Gonzalez
contact attributeDepartment:Proteomics Unit Position:researcher e-mail:cgonzalez@cnb.csic.es
contact affiliationCNB-CSIC
contact emailcgonzalez@cnb.csic.es
Mikel Azkargorta
contact attributeDepartment:Proteomics Platform Position:lab personnel Address:Servicio Proteómica CIC bioGUNE. Parque Tecnológico de Bizkaia. Edif. 800 48160 DERIO- BIZKAIA e-mail:mazkargorta@cicbiogune.es Telephone:94 406 1329
contact affiliationCIC bioGUNE
contact emailmazkargorta@cicbiogune.es
Alberto Medina-Aunon
contact affiliationCentro Nacional de Biotecnologia, CSIC, Madrid, Spain.
contact emailjamedina@cnb.csic.es
Joan Villanueva
contact attributeDepartment:LP-CSIC/UAB Position:lab personnel Address:Facultat de Medicina Edifici M2, Despatx M2-002.A Universitat Autònoma de Barcelona 08193 Barcelona (Catalunya, España) e-mail:joavilrib@gmail.com Telephone:935814912
contact affiliationIIBB
contact emailjoavilrib@gmail.com
Marta Mendes
contact attributeDepartment:Medicina Molecular - Proteomica Funcional Position:researcher Address:Ramiro de Maeztu, 9 28040 Madrid e-mail:m.mendes@cib.csic.es Telephone:+34 91 837 31 12 ext 4364
contact affiliationCentro de Investigaciones Biologicas
contact emailm.mendes@cib.csic.es
Joan Josep Bech
contact attributeDepartment:Laboratori de Proteòmica Position:researcher Address:Psg. Vall Hebron, 119-129 Vall Hebron Institut de Recerca (VHIR). Edifici Collserola 08035 Barcelona e-mail:jjbech@vhio.net Telephone:934894174
contact affiliationVall Hebron Institute of Oncology (VHIO)
contact emailjjbech@vhio.net
Eliandre De Oliveira
contact attributeDepartment:Proteomics Platform Position:researcher Address:Plataforma de Proteòmica PCB - Edifici Clúster Baldiri Reixac, 10 08028 Barcelona Tel 93 403 46 53 Fax 93 403 72 06 pproteomica@pcb.ub.es http://www.pcb.ub.cat/plataforma/proteomica e-mail:eoliveira@pcb.ub.es Telephone:934037206
contact affiliationPCB
contact emailpproteomica@pcb.ub.es
Full Dataset Link List
Dataset FTP location
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Repository Record List
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