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PXD000382

PXD000382 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleMetaProSIP protein-SIP data
DescriptionMetaProSIP offers an automated high-throughput solution for 13C or 15N protein-SIP experiments. Labeled peptides are identified based on their unlabeled isotopologues. It calculates incorporation of heavy isotopes (RIA), the labeling ratio (LR) between proteins as well as additional shape properties of the isotopic distribution. FeatureXML files have been created using OpenMS 1.10 using the FeatureFinderCentroided tool. Unlabeled peptides have been identified by OMSSA 2.1.9 (precursor mass tolerance 10 ppm, fragment mass tolerance 0.5 Da, FDR filtering at 2%) and mapped to the feature data using the IDMapper tool.
HostingRepositoryPRIDE
AnnounceDate2014-11-28
AnnouncementXMLSubmission_2014-11-28_00:30:51.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterTimo Sachsenberg
SpeciesList scientific name: uncultured bacterium; NCBI TaxID: 77133;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue
InstrumentLTQ Orbitrap
Dataset History
RevisionDatetimeStatusChangeLog Entry
02013-07-30 02:30:10ID requested
12014-11-27 03:05:45announced
22014-11-27 03:16:29announcedUpdated publication reference for PubMed record(s): 25407473.
32014-11-27 06:37:42announcedUpdated publication reference for PubMed record(s): 25412983.
42014-11-28 00:30:53announcedUpdated project metadata.
Publication List
Sachsenberg T, Herbst FA, Taubert M, Kermer R, Jehmlich N, von Bergen M, Seifert J, Kohlbacher O, MetaProSIP: automated inference of stable isotope incorporation rates in proteins for functional metaproteomics. J Proteome Res, 14(2):619-27(2015) [pubmed]
Keyword List
curator keyword: Biological, Technical
submitter keyword: MetaProSIP, protein-SIP
Contact List
Timo Sachsenberg
contact affiliationUniversity of T??bingen
contact emailsachsenb@informatik.uni-tuebingen.de
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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