PXD000382 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | MetaProSIP protein-SIP data |
Description | MetaProSIP offers an automated high-throughput solution for 13C or 15N protein-SIP experiments. Labeled peptides are identified based on their unlabeled isotopologues. It calculates incorporation of heavy isotopes (RIA), the labeling ratio (LR) between proteins as well as additional shape properties of the isotopic distribution. FeatureXML files have been created using OpenMS 1.10 using the FeatureFinderCentroided tool. Unlabeled peptides have been identified by OMSSA 2.1.9 (precursor mass tolerance 10 ppm, fragment mass tolerance 0.5 Da, FDR filtering at 2%) and mapped to the feature data using the IDMapper tool. |
HostingRepository | PRIDE |
AnnounceDate | 2014-11-28 |
AnnouncementXML | Submission_2014-11-28_00:30:51.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Timo Sachsenberg |
SpeciesList | scientific name: uncultured bacterium; NCBI TaxID: 77133; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2013-07-30 02:30:10 | ID requested | |
1 | 2014-11-27 03:05:45 | announced | |
2 | 2014-11-27 03:16:29 | announced | Updated publication reference for PubMed record(s): 25407473. |
3 | 2014-11-27 06:37:42 | announced | Updated publication reference for PubMed record(s): 25412983. |
⏵ 4 | 2014-11-28 00:30:53 | announced | Updated project metadata. |
Publication List
Sachsenberg T, Herbst FA, Taubert M, Kermer R, Jehmlich N, von Bergen M, Seifert J, Kohlbacher O, MetaProSIP: automated inference of stable isotope incorporation rates in proteins for functional metaproteomics. J Proteome Res, 14(2):619-27(2015) [pubmed] |
Keyword List
curator keyword: Biological, Technical |
submitter keyword: MetaProSIP, protein-SIP |
Contact List
Timo Sachsenberg |
contact affiliation | University of T??bingen |
contact email | sachsenb@informatik.uni-tuebingen.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/11/PXD000382 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD000382
- Label: PRIDE project
- Name: MetaProSIP protein-SIP data