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PXD000323

PXD000323 is an original dataset announced via ProteomeXchange.

Dataset Summary

  • Title: Signatures for Mass Spectrometry Data Quality, part 4 of 5
  • Description: Logistic regression classification models were fit to manually classified quality control (QC) LC-MS/MS datasets to develop a model that can predict whether a dataset is in or out of control. Model parameters were optimized by minimizing a loss function that accounts for the tradeoff between false positive and false negative errors. In addition to the 1152 training/testing datasets, we are including 2662 additional datasets, all of the same QC sample (whole cell lysate of Shewanella oneidensis). Datasets originate from 6 Thermo instrument platforms: Exactive, LTQ, VelosPro, Orbitrap, Q-Exactive, and Velos Orbitrap.
  • HostingRepository: PRIDE
  • AnnounceDate: 2014-07-25
  • AnnouncementXML: Submission_2014-07-25_01:19:41.xml
  • DigitalObjectIdentifier:
  • ReviewLevel: Peer-reviewed dataset
  • DatasetOrigin: Original dataset
  • RepositorySupport: Unsupported dataset by repository
  • PrimarySubmitter: Matthew Monroe
  • SpeciesList: scientific name: Shewanella oneidensis (strain MR-1); NCBI TaxID: 211586;
  • ModificationList: Oxidation
  • Instrument: LTQ Orbitrap Velos

Dataset History

RevisionDatetimeStatusChangeLog Entry
02013-07-04 08:16:31ID requested
12013-10-04 10:25:34announced
22014-03-21 09:10:31announcedUpdated publication reference for PubMed record(s): 24611607.
32014-07-25 01:19:42announcedUpdated project metadata.

Publication List

  1. Amidan BG, Orton DJ, Lamarche BL, Monroe ME, Moore RJ, Venzin AM, Smith RD, Sego LH, Tardiff MF, Payne SH, Signatures for mass spectrometry data quality. J Proteome Res, 13(4):2215-22(2014) [pubmed]

Keyword List

  1. submitter keyword: quality control, QC, data quality, metrics, Quameter

Contact List

    Matthew Monroe
    • contact affiliation: Pacific Northwest National Laboratory
    • contact email: matthew.monroe@pnnl.gov
    • dataset submitter:

Full Dataset Link List

  1. Dataset FTP location
  2. PRIDE project URI
Repository Record List
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