PXD000321 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Signatures for Mass Spectrometry Data Quality, part 2 of 5 |
Description | Logistic regression classification models were fit to manually classified quality control (QC) LC-MS/MS datasets to develop a model that can predict whether a dataset is in or out of control. Model parameters were optimized by minimizing a loss function that accounts for the tradeoff between false positive and false negative errors. In addition to the 1152 training/testing datasets, we are including 2662 additional datasets, all of the same QC sample (whole cell lysate of Shewanella oneidensis). Datasets originate from 6 Thermo instrument platforms: Exactive, LTQ, VelosPro, Orbitrap, Q-Exactive, and Velos Orbitrap. |
HostingRepository | PRIDE |
AnnounceDate | 2014-07-25 |
AnnouncementXML | Submission_2014-07-25_01:18:42.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Matthew Monroe |
SpeciesList | scientific name: Shewanella oneidensis (strain MR-1); NCBI TaxID: 211586; |
ModificationList | Oxidation |
Instrument | LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2013-07-04 08:14:42 | ID requested | |
1 | 2013-10-03 18:28:37 | announced | |
2 | 2014-03-21 09:09:46 | announced | Updated publication reference for PubMed record(s): 24611607. |
⏵ 3 | 2014-07-25 01:18:43 | announced | Updated project metadata. |
Publication List
Amidan BG, Orton DJ, Lamarche BL, Monroe ME, Moore RJ, Venzin AM, Smith RD, Sego LH, Tardiff MF, Payne SH, Signatures for mass spectrometry data quality. J Proteome Res, 13(4):2215-22(2014) [pubmed] |
Keyword List
submitter keyword: quality control, QC, data quality, metrics, Quameter |
Contact List
Matthew Monroe |
contact affiliation | Pacific Northwest National Laboratory |
contact email | matthew.monroe@pnnl.gov |
dataset submitter | |
Full Dataset Link List
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD000321
- Label: PRIDE project
- Name: Signatures for Mass Spectrometry Data Quality, part 2 of 5