<<< Full experiment listing

PXD000321

PXD000321 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleSignatures for Mass Spectrometry Data Quality, part 2 of 5
DescriptionLogistic regression classification models were fit to manually classified quality control (QC) LC-MS/MS datasets to develop a model that can predict whether a dataset is in or out of control. Model parameters were optimized by minimizing a loss function that accounts for the tradeoff between false positive and false negative errors. In addition to the 1152 training/testing datasets, we are including 2662 additional datasets, all of the same QC sample (whole cell lysate of Shewanella oneidensis). Datasets originate from 6 Thermo instrument platforms: Exactive, LTQ, VelosPro, Orbitrap, Q-Exactive, and Velos Orbitrap.
HostingRepositoryPRIDE
AnnounceDate2014-07-25
AnnouncementXMLSubmission_2014-07-25_01:18:42.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterMatthew Monroe
SpeciesList scientific name: Shewanella oneidensis (strain MR-1); NCBI TaxID: 211586;
ModificationListOxidation
InstrumentLTQ Orbitrap
Dataset History
RevisionDatetimeStatusChangeLog Entry
02013-07-04 08:14:42ID requested
12013-10-03 18:28:37announced
22014-03-21 09:09:46announcedUpdated publication reference for PubMed record(s): 24611607.
32014-07-25 01:18:43announcedUpdated project metadata.
Publication List
Amidan BG, Orton DJ, Lamarche BL, Monroe ME, Moore RJ, Venzin AM, Smith RD, Sego LH, Tardiff MF, Payne SH, Signatures for mass spectrometry data quality. J Proteome Res, 13(4):2215-22(2014) [pubmed]
Keyword List
submitter keyword: quality control, QC, data quality, metrics, Quameter
Contact List
Matthew Monroe
contact affiliationPacific Northwest National Laboratory
contact emailmatthew.monroe@pnnl.gov
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2013/10/PXD000321
PRIDE project URI
Repository Record List
[ + ]