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PXD000320

PXD000320 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleSignatures for Mass Spectrometry Data Quality, part 1 of 5
DescriptionLogistic regression classification models were fit to manually classified quality control (QC) LC-MS/MS datasets to develop a model that can predict whether a dataset is in or out of control. Model parameters were optimized by minimizing a loss function that accounts for the tradeoff between false positive and false negative errors. In addition to the 1152 training/testing datasets, we are including 2662 additional datasets, all of the same QC sample (whole cell lysate of Shewanella oneidensis). Datasets originate from 6 Thermo instrument platforms: Exactive, LTQ, VelosPro, Orbitrap, Q-Exactive, and Velos Orbitrap.
HostingRepositoryPRIDE
AnnounceDate2014-07-25
AnnouncementXMLSubmission_2014-07-25_01:18:14.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterMatthew Monroe
SpeciesList scientific name: Shewanella oneidensis (strain MR-1); NCBI TaxID: 211586;
ModificationListOxidation
InstrumentLTQ Velos; LTQ; LTQ XL ETD
Dataset History
RevisionDatetimeStatusChangeLog Entry
02013-07-04 08:13:58ID requested
12013-10-03 14:00:39announced
22014-03-21 09:08:42announcedUpdated publication reference for PubMed record(s): 24611607.
32014-07-25 01:18:15announcedUpdated project metadata.
Publication List
Amidan BG, Orton DJ, Lamarche BL, Monroe ME, Moore RJ, Venzin AM, Smith RD, Sego LH, Tardiff MF, Payne SH, Signatures for mass spectrometry data quality. J Proteome Res, 13(4):2215-22(2014) [pubmed]
Keyword List
submitter keyword: quality control, QC, data quality, metrics, Quameter
Contact List
Matthew Monroe
contact affiliationPacific Northwest National Laboratory
contact emailmatthew.monroe@pnnl.gov
dataset submitter
Full Dataset Link List
Dataset FTP location
PRIDE project URI
Repository Record List
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