PXD000279 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | MaxLFQ label-free quantification algorithm benchmark datasets |
Description | We developed a set of algorithms for label-free quantification, termed MaxLFQ, embedded into MaxQuant. This contains two datasets to benchmark MaxLFQ: The proteome benchmark dataset consists of of HeLa and E. coli lysates mixed at defined ratios. The dynamic range benchmark dataset consists of UPS1/UPS2 standards (Sigma) spiked into E. coli lysates and quantified against each other. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:17:35.992.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Mario Oroshi |
SpeciesList | scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive; LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2013-06-10 03:01:43 | ID requested | |
1 | 2014-09-17 03:29:06 | announced | |
2 | 2014-09-18 00:31:53 | announced | Updated project metadata. |
⏵ 3 | 2024-10-22 04:17:36 | announced | 2024-10-22: Updated project metadata. |
Publication List
10.1074/mcp.M113.031591; |
Cox J, Hein MY, Luber CA, Paron I, Nagaraj N, Mann M, Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ. Mol Cell Proteomics, 13(9):2513-26(2014) [pubmed] |
Keyword List
curator keyword: Technical |
submitter keyword: benchmark datasets,label-free quantification, MaxLFQ, MaxQuant |
Contact List
Mario Oroshi |
contact affiliation | Proteomics |
contact email | oroshi@biochem.mpg.de |
lab head | |
Mario Oroshi |
contact affiliation | Proteomics |
contact email | oroshi@biochem.mpg.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/09/PXD000279 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD000279
- Label: PRIDE project
- Name: MaxLFQ label-free quantification algorithm benchmark datasets