PXD000227 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Analysis of the peptidome of the moss Physcomitrella patens |
Description | We performed the analysis of native peptides pool of gametophores, protonema and protoplast cells of the moss. To reduce endogenous proteolytic activity we used an acid extraction buffer with a mixture of plant protease inhibitors. All the actions were performed on ice. After the proper sample preparation, the extracted peptides were identified with use of tandem mass spectrometry on the basis of protein database uniref100, taxon Physcomitrella patens. |
HostingRepository | PRIDE |
AnnounceDate | 2016-05-18 |
AnnouncementXML | Submission_2016-05-18_07:43:43.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD000227 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Dmitry Alexeev |
SpeciesList | scientific name: Physcomitrella patens; NCBI TaxID: 145481; |
ModificationList | No PTMs are included in the dataset |
Instrument | instrument model: TOF; instrument model: LTQ Orbitrap; LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2013-04-25 08:56:56 | ID requested | |
⏵ 1 | 2016-05-18 07:43:54 | announced | |
Publication List
Fesenko IA, Arapidi GP, Skripnikov AY, Alexeev DG, Kostryukova ES, Manolov AI, Altukhov IA, Khazigaleeva RA, Seredina AV, Kovalchuk SI, Ziganshin RH, Zgoda VG, Novikova SE, Semashko TA, Slizhikova DK, Ptushenko VV, Gorbachev AY, Govorun VM, Ivanov VT, Specific pools of endogenous peptides are present in gametophore, protonema, and protoplast cells of the moss Physcomitrella patens. BMC Plant Biol, 15():87(2015) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: endogenous peptide, moss, plant peptidome, Physcomitrella patens |
Contact List
Vadim Govorun |
contact affiliation | IBCH RAS |
contact email | govorun@hotmail.ru |
lab head | |
Dmitry Alexeev |
contact affiliation | Proteome dept. |
contact email | exappeal@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/05/PXD000227 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD000227
- Label: PRIDE project
- Name: Analysis of the peptidome of the moss Physcomitrella patens