PXD000217

PXD000217 is an original dataset announced via ProteomeXchange.

Title	Phosphoproteomics data classify haematological cancer cell lines according to tumour type and sensitivity to kinase inhibitors
Description	Acute myeloid leukemia, lymphoma and multiple myeloma cell lines were grown for 24h in RPMI medium and cells were harvested by centrifugation. Samples were digested with trypsin and subjected to phosphoenrichment using IMAC. Phosphopeptides were run in a LTQ-Orbitrap-XL. Peaks lists were generated with Mascot Distiller (version 2.3) in MGF format and Database searches were with Mascot Server (version 2.3) against the SwissProt database restricted to human sequences (release December 2011) and trypsin cleavage. Restrictions were 7ppm for parent ions and 600 mmu for fragment masses. Allowed modifications were phosphorylation of Ser/Thr/Tyr, pyro-Glu (N-term) and methionine oxidation and one miss-cleavage allowed. Quantification was by label-free using peak heights of extracted ion chromatograms (XICs) constructed with narrow mass windows (7ppm) and time windows (1.5 minutes). Pescal, a computer program written in house, was used to automate the generation of XICs and to calculate peak heights.
HostingRepository	PRIDE
AnnounceDate	2013-05-01
AnnouncementXML	Submission_2013-05-01_04:46:38.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD000217
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Pedro Casado-Izquierdo
SpeciesList	scientific name: Homo sapiens (human); NCBI TaxID: 9606;
ModificationList	deaminated residue; monohydroxylated residue; phosphorylated residue; neutral loss: 97.976896; iodoacetamide derivatized residue; neutral loss: 63.998285
Instrument	radial ejection linear ion trap

Revision	Datetime	Status	ChangeLog Entry
0	2013-04-19 02:20:03	ID requested
1	2013-04-26 06:58:28	announced
1	2014-07-28 00:35:06	announced
⏵ 2	2013-05-01 04:46:38	announced	Add reference

Casado P, Alcolea MP, Iorio F, Rodr, í, guez-Prados JC, Vanhaesebroeck B, Saez-Rodriguez J, Joel S, Cutillas PR, Phosphoproteomics data classify hematological cancer cell lines according to tumor type and sensitivity to kinase inhibitors. Genome Biol, 14(4):R37(2013) [pubmed]

submitter keyword: Phosphoproteomics, IMAC, Kinase inhibitor, Drug sensitivity, Hierarchical Clustering Analysis, Blood Malignancies, Acute Myeloid Leukemia

pedro cutillas
contact attribute	pedro.cutillas@csc.mrc.ac.uk
contact affiliation	MRC Imperial Colledge
contact email	pedro.cutillas@csc.mrc.ac.uk
Pedro Casado-Izquierdo
contact affiliation	Cell Signalling
contact email	p.m.casado-izquierdo@qmul.ac.uk

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/2013/04/PXD000217

• PRIDE
  1. 29330
     1. InstrumentRef: INSTRUMENT_1
     2. Label: P31 E2 R2
     3. ModificationList: deaminated residue, monohydroxylated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss,
     4. Name: P31/Fuj Cells Experiment 2 Replicate 2
     5. PublicationRef: PMID23628362
  2. 29318
     1. InstrumentRef: INSTRUMENT_1
     2. Label: MV411 E2R2
     3. ModificationList: deaminated residue, monohydroxylated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss, neutral loss,
     4. Name: MV4-11 Cells Experiment 2 Replicate 2
     5. PublicationRef: PMID23628362
  3. 29294
     1. InstrumentRef: INSTRUMENT_1
     2. Label: AML MV4 R1
     3. ModificationList: deaminated residue, iodoacetamide derivatized residue, monohydroxylated residue, phosphorylated residue, neutral loss, neutral loss,
     4. Name: AML Cell Lines Experiment MV4-11 Replicate 1
     5. PublicationRef: PMID23628362
  4. 29324
     1. InstrumentRef: INSTRUMENT_1
     2. Label: OMP2 E2 R1
     3. ModificationList: deaminated residue, monohydroxylated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss,
     4. Name: OMP2 Experiment 2 Replicate 1
     5. PublicationRef: PMID23628362
  5. 29335
     1. InstrumentRef: INSTRUMENT_1
     2. Label: P31 E2 R1
     3. ModificationList: deaminated residue, monohydroxylated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss, neutral loss,
     4. Name: P31/Fuj Cells Experiment 2 Replicate 1
     5. PublicationRef: PMID23628362
  6. 29323
     1. InstrumentRef: INSTRUMENT_1
     2. Label: MV411 E2R1
     3. ModificationList: monohydroxylated residue, deaminated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss, neutral loss,
     4. Name: MV4-11 Cells Experiment 2 Replicate 1
     5. PublicationRef: PMID23628362
  7. 29295
     1. InstrumentRef: INSTRUMENT_1
     2. Label: AML MV4 R2
     3. ModificationList: deaminated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss, monohydroxylated residue, neutral loss,
     4. Name: AML Cell Lines Experiment MV4-11 Replicate 2
     5. PublicationRef: PMID23628362
  8. 29317
     1. InstrumentRef: INSTRUMENT_1
     2. Label: DoHH2 E2R1
     3. ModificationList: monohydroxylated residue, deaminated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss,
     4. Name: DoHH2 Cells Experiment 2 Replicate 1
     5. PublicationRef: PMID23628362
  9. 29314
     1. InstrumentRef: INSTRUMENT_1
     2. Label: DoHH2 E1R1
     3. ModificationList: monohydroxylated residue, deaminated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss, neutral loss,
     4. Name: DoHH2 Cells Experiment 1 Replicate 1
     5. PublicationRef: PMID23628362
  10. 29280
      1. InstrumentRef: INSTRUMENT_1
      2. Label: AML AML R2
      3. ModificationList: phosphorylated residue, neutral loss, iodoacetamide derivatized residue, deaminated residue, monohydroxylated residue, neutral loss,
      4. Name: AML Cell Lines Experiment AML Replicate 2
      5. PublicationRef: PMID23628362
  11. 29353
      1. InstrumentRef: INSTRUMENT_1
      2. Label: U266 E1R3
      3. ModificationList: iodoacetamide derivatized residue, deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: U266 Cells Experiment 1 Replicate3
      5. PublicationRef: PMID23628362
  12. 29333
      1. InstrumentRef: INSTRUMENT_1
      2. Label: P31 E1 R2
      3. ModificationList: deaminated residue, monohydroxylated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss,
      4. Name: P31/Fuj Cells Experiment 1 Replicate 2
      5. PublicationRef: PMID23628362
  13. 29339
      1. InstrumentRef: INSTRUMENT_1
      2. Label: RL E1R2
      3. ModificationList: deaminated residue, iodoacetamide derivatized residue, monohydroxylated residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: RL Cells Experiment 1 Replicate 2
      5. PublicationRef: PMID23628362
  14. 29283
      1. InstrumentRef: INSTRUMENT_1
      2. Label: AML CMK R3
      3. ModificationList: phosphorylated residue, monohydroxylated residue, neutral loss, iodoacetamide derivatized residue, deaminated residue, neutral loss,
      4. Name: AML Cell Lines Experiment CMK Replicate 3
      5. PublicationRef: PMID23628362
  15. 29329
      1. InstrumentRef: INSTRUMENT_1
      2. Label: OMP2 Cells E1R3
      3. ModificationList: iodoacetamide derivatized residue, deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: OMP2 Cells Experiment 1 Replicate 3
      5. PublicationRef: PMID23628362
  16. 29310
      1. InstrumentRef: INSTRUMENT_1
      2. Label: DHL6 E1R3
      3. ModificationList: deaminated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss, monohydroxylated residue, neutral loss,
      4. Name: DHL6 Cells Experiment 1 Replicate3
      5. PublicationRef: PMID23628362
  17. 29327
      1. InstrumentRef: INSTRUMENT_1
      2. Label: OMP2 Cells E1R1
      3. ModificationList: iodoacetamide derivatized residue, deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: OMP2 Cells Experiment 1 Replicate 1
      5. PublicationRef: PMID23628362
  18. 29290
      1. InstrumentRef: INSTRUMENT_1
      2. Label: AML Kasumi R3
      3. ModificationList: deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss, iodoacetamide derivatized residue, neutral loss,
      4. Name: AML Cell Lines Experiment Kasumi1 Replicate 3
      5. PublicationRef: PMID23628362
  19. 29306
      1. InstrumentRef: INSTRUMENT_1
      2. Label: DHL6 E2R2
      3. ModificationList: iodoacetamide derivatized residue, deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: DHL6 Cells Experiment 2 Replicate2
      5. PublicationRef: PMID23628362
  20. 29302
      1. InstrumentRef: INSTRUMENT_1
      2. Label: CTS E1 R1
      3. ModificationList: deaminated residue, monohydroxylated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: CTS Cells Experiment 1 Replicate 1
      5. PublicationRef: PMID23628362
  21. 29307
      1. InstrumentRef: INSTRUMENT_1
      2. Label: DHL6 E2R3
      3. ModificationList: deaminated residue, iodoacetamide derivatized residue, monohydroxylated residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: DHL6 Cells Experiment 2 Replicate3
      5. PublicationRef: PMID23628362
  22. 29337
      1. InstrumentRef: INSTRUMENT_1
      2. Label: RL E2 R3
      3. ModificationList: deaminated residue, iodoacetamide derivatized residue, monohydroxylated residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: RL Cells Experiment 2 Replicate 3
      5. PublicationRef: PMID23628362
  23. 29309
      1. InstrumentRef: INSTRUMENT_1
      2. Label: DHL6 E1R2
      3. ModificationList: deaminated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss, monohydroxylated residue, neutral loss,
      4. Name: DHL6 Cells Experiment 1 Replicate2
      5. PublicationRef: PMID23628362
  24. 29325
      1. InstrumentRef: INSTRUMENT_1
      2. Label: OMP2 E2 R2
      3. ModificationList: deaminated residue, monohydroxylated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: OMP2 Experiment 2 Replicate 2
      5. PublicationRef: PMID23628362
  25. 29326
      1. InstrumentRef: INSTRUMENT_1
      2. Label: OMP2 E2 R3
      3. ModificationList: deaminated residue, monohydroxylated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss,
      4. Name: OMP2 Experiment 2 Replicate 3
      5. PublicationRef: PMID23628362
  26. 29334
      1. InstrumentRef: INSTRUMENT_1
      2. Label: P31 E1 R3
      3. ModificationList: iodoacetamide derivatized residue, deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss,
      4. Name: P31/Fuj Cells Experiment 1 Replicate 3
      5. PublicationRef: PMID23628362
  27. 29308
      1. InstrumentRef: INSTRUMENT_1
      2. Label: DHL6 E1R1
      3. ModificationList: iodoacetamide derivatized residue, deaminated residue, phosphorylated residue, neutral loss, monohydroxylated residue, neutral loss,
      4. Name: DHL6 Cells Experiment 1 Replicate1
      5. PublicationRef: PMID23628362
  28. 29288
      1. InstrumentRef: INSTRUMENT_1
      2. Label: AML Kasumi R1
      3. ModificationList: iodoacetamide derivatized residue, phosphorylated residue, neutral loss, monohydroxylated residue, deaminated residue, neutral loss,
      4. Name: AML Cell Lines Experiment Kasumi1 Replicate 1
      5. PublicationRef: PMID23628362
  29. 29304
      1. InstrumentRef: INSTRUMENT_1
      2. Label: CTS E1 R3
      3. ModificationList: iodoacetamide derivatized residue, deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: CTS Cells Experiment 1 Replicate 3
      5. PublicationRef: PMID23628362
  30. 29313
      1. InstrumentRef: INSTRUMENT_1
      2. Label: DoHH2 E2R3
      3. ModificationList: deaminated residue, iodoacetamide derivatized residue, monohydroxylated residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: DoHH2 Cells Experiment 2 Replicate 3
      5. PublicationRef: PMID23628362
  31. 29289
      1. InstrumentRef: INSTRUMENT_1
      2. Label: AML Kasumi R2
      3. ModificationList: iodoacetamide derivatized residue, phosphorylated residue, neutral loss, deaminated residue, monohydroxylated residue, neutral loss,
      4. Name: AML Cell Lines Experiment Kasumi1 Replicate 2
      5. PublicationRef: PMID23628362
  32. 29282
      1. InstrumentRef: INSTRUMENT_1
      2. Label: AML CMK R2
      3. ModificationList: deaminated residue, phosphorylated residue, neutral loss, iodoacetamide derivatized residue, monohydroxylated residue, neutral loss,
      4. Name: AML Cell Lines Experiment CMK Replicate 2
      5. PublicationRef: PMID23628362
  33. 29351
      1. InstrumentRef: INSTRUMENT_1
      2. Label: U266 E1R1
      3. ModificationList: deaminated residue, monohydroxylated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss,
      4. Name: U266 Cells Experiment 1 Replicate1
      5. PublicationRef: PMID23628362
  34. 29346
      1. InstrumentRef: INSTRUMENT_1
      2. Label: RPMI E1 R2
      3. ModificationList: iodoacetamide derivatized residue, deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss,
      4. Name: RPMI Cells Experiment 1 Replicate 2
      5. PublicationRef: PMID23628362
  35. 29284
      1. InstrumentRef: INSTRUMENT_1
      2. Label: AML CMK R1
      3. ModificationList: deaminated residue, phosphorylated residue, neutral loss, iodoacetamide derivatized residue, monohydroxylated residue, neutral loss,
      4. Name: AML Cell Lines Experiment CMK Replicate 1
      5. PublicationRef: PMID23628362
  36. 29347
      1. InstrumentRef: INSTRUMENT_1
      2. Label: RPMI E1 R3
      3. ModificationList: iodoacetamide derivatized residue, deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: RPMI Cells Experiment 1 Replicate 3
      5. PublicationRef: PMID23628362
  37. 29279
      1. InstrumentRef: INSTRUMENT_1
      2. Label: AML AML R1
      3. ModificationList: deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss, iodoacetamide derivatized residue, neutral loss,
      4. Name: AML Cell Lines Experiment AML Replicate 1
      5. PublicationRef: PMID23628362
  38. 29301
      1. InstrumentRef: INSTRUMENT_1
      2. Label: CTS E2 R3
      3. ModificationList: deaminated residue, monohydroxylated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: CTS Cells Experiment 2 Replicate 3
      5. PublicationRef: PMID23628362
  39. 29336
      1. InstrumentRef: INSTRUMENT_1
      2. Label: RL E2 R2
      3. ModificationList: deaminated residue, monohydroxylated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: RL Cells Experiment 2 Replicate 2
      5. PublicationRef: PMID23628362
  40. 29297
      1. InstrumentRef: INSTRUMENT_1
      2. Label: AML P31 R1
      3. ModificationList: deaminated residue, monohydroxylated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss,
      4. Name: AML Cell Lines P31 Replicate 1
      5. PublicationRef: PMID23628362
  41. 29305
      1. InstrumentRef: INSTRUMENT_1
      2. Label: CTS E2 R1
      3. ModificationList: iodoacetamide derivatized residue, deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss,
      4. Name: CTS Cells Experiment 2 Replicate 1
      5. PublicationRef: PMID23628362
  42. 29292
      1. InstrumentRef: INSTRUMENT_1
      2. Label: AML KG1 R2
      3. ModificationList: deaminated residue, phosphorylated residue, neutral loss, iodoacetamide derivatized residue, monohydroxylated residue, neutral loss,
      4. Name: AML Cell Lines Experiment KG1 Replicate 2
      5. PublicationRef: PMID23628362
  43. 29300
      1. InstrumentRef: INSTRUMENT_1
      2. Label: CTS E2 R2
      3. ModificationList: deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss, iodoacetamide derivatized residue, neutral loss,
      4. Name: CTS Cells Experiment 2 Replicate 2
      5. PublicationRef: PMID23628362
  44. 29342
      1. InstrumentRef: INSTRUMENT_1
      2. Label: RPMI E2R1
      3. ModificationList: deaminated residue, monohydroxylated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss,
      4. Name: RPMI Cells Experiment 2 Replicate 1
      5. PublicationRef: PMID23628362
  45. 29286
      1. InstrumentRef: INSTRUMENT_1
      2. Label: AML Hel R2
      3. ModificationList: phosphorylated residue, neutral loss, monohydroxylated residue, iodoacetamide derivatized residue, deaminated residue, neutral loss,
      4. Name: AML Cell Lines Experiment Hel Replicate2
      5. PublicationRef: PMID23628362
  46. 29352
      1. InstrumentRef: INSTRUMENT_1
      2. Label: U266 E1R2
      3. ModificationList: iodoacetamide derivatized residue, deaminated residue, monohydroxylated residue, neutral loss, phosphorylated residue, neutral loss,
      4. Name: U266 Cells Experiment 1 Replicate2
      5. PublicationRef: PMID23628362
  47. 29303
      1. InstrumentRef: INSTRUMENT_1
      2. Label: CTS E1 R2
      3. ModificationList: iodoacetamide derivatized residue, deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss,
      4. Name: CTS Cells Experiment 1 Replicate 2
      5. PublicationRef: PMID23628362
  48. 29312
      1. InstrumentRef: INSTRUMENT_1
      2. Label: DoHH2 E2R2
      3. ModificationList: deaminated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss, monohydroxylated residue, neutral loss,
      4. Name: DoHH2 Cells Experiment 2 Replicate 2
      5. PublicationRef: PMID23628362
  49. 29319
      1. InstrumentRef: INSTRUMENT_1
      2. Label: MV411 E2R1
      3. ModificationList: deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss, iodoacetamide derivatized residue,
      4. Name: MV4-11 Cells Experiment 2 Replicate 3
      5. PublicationRef: PMID23628362
  50. 29331
      1. InstrumentRef: INSTRUMENT_1
      2. Label: P31 E2 R3
      3. ModificationList: deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss, iodoacetamide derivatized residue, neutral loss,
      4. Name: P31/Fuj Cells Experiment 2 Replicate 3
      5. PublicationRef: PMID23628362
  51. 29341
      1. InstrumentRef: INSTRUMENT_1
      2. Label: RL E2 R1
      3. ModificationList: iodoacetamide derivatized residue, deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss,
      4. Name: RL Cells Experiment 2 Replicate 1
      5. PublicationRef: PMID23628362
  52. 29343
      1. InstrumentRef: INSTRUMENT_1
      2. Label: RPMI E2R2
      3. ModificationList: iodoacetamide derivatized residue, deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss,
      4. Name: RPMI Cells Experiment 2 Replicate 2
      5. PublicationRef: PMID23628362
  53. 29340
      1. InstrumentRef: INSTRUMENT_1
      2. Label: RL E1R3
      3. ModificationList: iodoacetamide derivatized residue, monohydroxylated residue, deaminated residue, phosphorylated residue, neutral loss,
      4. Name: RL Cells Experiment 1 Replicate 3
      5. PublicationRef: PMID23628362
  54. 29345
      1. InstrumentRef: INSTRUMENT_1
      2. Label: RPMI E1 R1
      3. ModificationList: iodoacetamide derivatized residue, deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: RPMI Cells Experiment 1 Replicate 1
      5. PublicationRef: PMID23628362
  55. 29316
      1. InstrumentRef: INSTRUMENT_1
      2. Label: DoHH2 E1R3
      3. ModificationList: monohydroxylated residue, deaminated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: DoHH2 Cells Experiment 1 Replicate 3
      5. PublicationRef: PMID23628362
  56. 29311
      1. InstrumentRef: INSTRUMENT_1
      2. Label: DHL6 E2R1
      3. ModificationList: iodoacetamide derivatized residue, deaminated residue, phosphorylated residue, neutral loss, monohydroxylated residue, neutral loss,
      4. Name: DHL6 Cells Experiment 2 Replicate1
      5. PublicationRef: PMID23628362
  57. 29349
      1. InstrumentRef: INSTRUMENT_1
      2. Label: U266 E2R2
      3. ModificationList: deaminated residue, monohydroxylated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: U266 Cells Experiment 2 Replicate 2
      5. PublicationRef: PMID23628362
  58. 29291
      1. InstrumentRef: INSTRUMENT_1
      2. Label: AML KG1 R1
      3. ModificationList: phosphorylated residue, neutral loss, iodoacetamide derivatized residue, deaminated residue, monohydroxylated residue,
      4. Name: AML Cell Lines Experiment KG1 Replicate 1
      5. PublicationRef: PMID23628362
  59. 29315
      1. InstrumentRef: INSTRUMENT_1
      2. Label: DoHH2 E1R2
      3. ModificationList: monohydroxylated residue, deaminated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: DoHH2 Cells Experiment 1 Replicate 2
      5. PublicationRef: PMID23628362
  60. 29338
      1. InstrumentRef: INSTRUMENT_1
      2. Label: RL E1R1
      3. ModificationList: iodoacetamide derivatized residue, monohydroxylated residue, deaminated residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: RL Cells Experiment 1 Replicate 1
      5. PublicationRef: PMID23628362
  61. 29296
      1. InstrumentRef: INSTRUMENT_1
      2. Label: AML MV4 R3
      3. ModificationList: phosphorylated residue, neutral loss, iodoacetamide derivatized residue, deaminated residue, monohydroxylated residue, neutral loss,
      4. Name: AML Cell Lines Experiment MV4-11 Replicate 3
      5. PublicationRef: PMID23628362
  62. 29287
      1. InstrumentRef: INSTRUMENT_1
      2. Label: AML Hel R3
      3. ModificationList: phosphorylated residue, neutral loss, iodoacetamide derivatized residue, monohydroxylated residue, deaminated residue, neutral loss,
      4. Name: AML Cell Lines Experiment Hel Replicate3
      5. PublicationRef: PMID23628362
  63. 29344
      1. InstrumentRef: INSTRUMENT_1
      2. Label: RPMI E2R3
      3. ModificationList: iodoacetamide derivatized residue, deaminated residue, phosphorylated residue, neutral loss, monohydroxylated residue, neutral loss,
      4. Name: RPMI Cells Experiment 2 Replicate 3
      5. PublicationRef: PMID23628362
  64. 29293
      1. InstrumentRef: INSTRUMENT_1
      2. Label: AML KG1 R3
      3. ModificationList: monohydroxylated residue, deaminated residue, phosphorylated residue, neutral loss, iodoacetamide derivatized residue, neutral loss,
      4. Name: AML Cell Lines Experiment KG1 Replicate 3
      5. PublicationRef: PMID23628362
  65. 29281
      1. InstrumentRef: INSTRUMENT_1
      2. Label: AML AML R3
      3. ModificationList: deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss, iodoacetamide derivatized residue, neutral loss,
      4. Name: AML Cell Lines Experiment AML Replicate 3
      5. PublicationRef: PMID23628362
  66. 29332
      1. InstrumentRef: INSTRUMENT_1
      2. Label: P31 E1 R1
      3. ModificationList: monohydroxylated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss, deaminated residue,
      4. Name: P31/Fuj Cells Experiment 1 Replicate 1
      5. PublicationRef: PMID23628362
  67. 29285
      1. InstrumentRef: INSTRUMENT_1
      2. Label: AML Hel R1
      3. ModificationList: monohydroxylated residue, deaminated residue, phosphorylated residue, neutral loss, iodoacetamide derivatized residue, neutral loss,
      4. Name: AML Cell Lines Experiment Hel Replicate1
      5. PublicationRef: PMID23628362
  68. 29299
      1. InstrumentRef: INSTRUMENT_1
      2. Label: AML P31 R3
      3. ModificationList: deaminated residue, monohydroxylated residue, neutral loss, phosphorylated residue, neutral loss, iodoacetamide derivatized residue,
      4. Name: AML Cell Lines P31 Replicate 3
      5. PublicationRef: PMID23628362
  69. 29322
      1. InstrumentRef: INSTRUMENT_1
      2. Label: MV411 E1R3
      3. ModificationList: iodoacetamide derivatized residue, deaminated residue, phosphorylated residue, neutral loss, monohydroxylated residue,
      4. Name: MV4-11 Cells Experiment 1 Replicate 3
      5. PublicationRef: PMID23628362
  70. 29321
      1. InstrumentRef: INSTRUMENT_1
      2. Label: MV411 E1R2
      3. ModificationList: deaminated residue, monohydroxylated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: MV4-11 Cells Experiment 1 Replicate 2
      5. PublicationRef: PMID23628362
  71. 29298
      1. InstrumentRef: INSTRUMENT_1
      2. Label: AML P31 R2
      3. ModificationList: deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss, iodoacetamide derivatized residue,
      4. Name: AML Cell Lines P31 Replicate 2
      5. PublicationRef: PMID23628362
  72. 29320
      1. InstrumentRef: INSTRUMENT_1
      2. Label: MV411 E1R1
      3. ModificationList: monohydroxylated residue, iodoacetamide derivatized residue, deaminated residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: MV4-11 Cells Experiment 1 Replicate 1
      5. PublicationRef: PMID23628362
  73. 29350
      1. InstrumentRef: INSTRUMENT_1
      2. Label: U266 E2R3
      3. ModificationList: deaminated residue, monohydroxylated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: U266 Cells Experiment 2 Replicate 3
      5. PublicationRef: PMID23628362
  74. 29328
      1. InstrumentRef: INSTRUMENT_1
      2. Label: OMP2 Cells E1R2
      3. ModificationList: iodoacetamide derivatized residue, deaminated residue, monohydroxylated residue, phosphorylated residue, neutral loss, neutral loss,
      4. Name: OMP2 Cells Experiment 1 Replicate 2
      5. PublicationRef: PMID23628362
  75. 29348
      1. InstrumentRef: INSTRUMENT_1
      2. Label: U266 E2R1
      3. ModificationList: deaminated residue, monohydroxylated residue, iodoacetamide derivatized residue, phosphorylated residue, neutral loss,
      4. Name: U266 Cells Experiment 2 Replicate 1
      5. PublicationRef: PMID23628362