PXD000167
PXD000167 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | HPP Chr18: depleted plasma and HepG2 cells, SRM scouting (Ponomarenko et al. 2014) |
| Description | The workflow for targeted proteome survey of proteins encoded by chromosome 18 was performed in three steps. SRM scouting enabled to acquire the preliminary data about the presence of proteotypic peptides in the depleted plasma (HPL) and HepG2 cells (HG2). For the observed signals from target peptides the developed acquisition and qualitative analysis methods were checked and confirmed by comparison of purified non-labeled analogues for the endogenous peptides with the data set named Scout. |
| HostingRepository | PeptideAtlas |
| AnnounceDate | 2014-08-14 |
| AnnouncementXML | Submission_2014-08-15_10:03:03.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Aleksey Filimonov |
| SpeciesList | scientific name: Homo sapiens; NCBI TaxID: 9606; |
| ModificationList | No PTMs are included in the dataset |
| Instrument | 6490 Triple Quadrupole LC/MS |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2013-02-28 19:44:25 | ID requested | |
| ⏵ 1 | 2014-08-15 10:03:04 | announced |
Publication List
| Ponomarenko EA, Kopylov AT, Lisitsa AV, Radko SP, Kiseleva YY, Kurbatov LK, Ptitsyn KG, Tikhonova OV, Moisa AA, Novikova SE, Poverennaya EV, Ilgisonis EV, Filimonov AD, Bogolubova NA, Averchuk VV, Karalkin PA, Vakhrushev IV, Yarygin KN, Moshkovskii SA, Zgoda VG, Sokolov AS, Mazur AM, Prokhortchouck EB, Skryabin KG, Ilina EN, Kostrjukova ES, Alexeev DG, Tyakht AV, Gorbachev AY, Govorun VM, Archakov AI, Chromosome 18 transcriptoproteome of liver tissue and HepG2 cells and targeted proteome mapping in depleted plasma: update 2013. J Proteome Res, 13(1):183-90(2014) [pubmed] |
Keyword List
| curator keyword: selected reaction monitoring, SRM, targeted |
Contact List
| Aleksey Filimonov | |
|---|---|
| contact affiliation | |
| contact email | filimonov.a.d@gmail.com |
| dataset submitter | |
| Alexander Archakov | |
| contact affiliation | the Russian Academy of Medical Sciences |
| contact email | alexander.archakov@ibmc.msk.ru |
| lab head | |
Full Dataset Link List
| PeptideAtlas dataset URI |
| PASSEL experiment URI |
| PASSEL transition group browser URI |
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