PXD000142

PXD000142 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Streptococcus uberis extracellular proteome
Description	S. uberis proteins from sub-cellular fractions (both cell wall-attached and secreted) were separated with SDS-PAGE, trypsine digested and identified with MS/MS analysis. Extracellular proteins were clustered into functional group based on in silico analysis. Concerning the database search: Mascot 2.2.0 was used with the following parameters: significance threshold p<0.05, Mascot MS/MS ion search : database NCBI, allow up to 1 miss cleavage, fixed modification - carbamidomethyl(C), variable modification- oxidation, peptide tol. +/- 1.5 Da, MS/MS tol. +/- 0.5 Da, monoisotopic.
HostingRepository	PRIDE
AnnounceDate	2024-10-07
AnnouncementXML	Submission_2024-10-07_08:48:53.316.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD000142
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Anita Jaglarz
SpeciesList	scientific name: Streptococcus; NCBI TaxID: 1349;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Bruker Daltonics esquire series; esquire 6000

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2013-02-07 02:41:11	ID requested
1	2013-02-13 05:26:17	announced
1	2014-07-28 00:29:37	announced
⏵ 2	2024-10-07 08:48:53	announced	2024-10-07: Updated project metadata.

Publication List

10.6019/PXD000142;

10.6019/PXD000142;

Keyword List

submitter keyword: MS/MS,Streptococcus uberis

submitter keyword: MS/MS,Streptococcus uberis

Contact List

Anita Jaglarz
contact affiliation	Disease Control
contact email	anita.jaglarz@moredun.ac.uk
lab head
Anita Jaglarz
contact affiliation	Disease Control
contact email	anita.jaglarz@moredun.ac.uk
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2013/02/PXD000142
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2013/02/PXD000142

PRIDE project URI

Repository Record List

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