PXD000142 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Streptococcus uberis extracellular proteome |
Description | S. uberis proteins from sub-cellular fractions (both cell wall-attached and secreted) were separated with SDS-PAGE, trypsine digested and identified with MS/MS analysis. Extracellular proteins were clustered into functional group based on in silico analysis. Concerning the database search: Mascot 2.2.0 was used with the following parameters: significance threshold p<0.05, Mascot MS/MS ion search : database NCBI, allow up to 1 miss cleavage, fixed modification - carbamidomethyl(C), variable modification- oxidation, peptide tol. +/- 1.5 Da, MS/MS tol. +/- 0.5 Da, monoisotopic. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-07 |
AnnouncementXML | Submission_2024-10-07_08:48:53.316.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD000142 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Anita Jaglarz |
SpeciesList | scientific name: Streptococcus; NCBI TaxID: 1349; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Bruker Daltonics esquire series; esquire 6000 |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2013-02-07 02:41:11 | ID requested | |
1 | 2013-02-13 05:26:17 | announced | |
1 | 2014-07-28 00:29:37 | announced | |
⏵ 2 | 2024-10-07 08:48:53 | announced | 2024-10-07: Updated project metadata. |
Publication List
Keyword List
submitter keyword: MS/MS,Streptococcus uberis |
Contact List
Anita Jaglarz |
contact affiliation | Disease Control |
contact email | anita.jaglarz@moredun.ac.uk |
lab head | |
Anita Jaglarz |
contact affiliation | Disease Control |
contact email | anita.jaglarz@moredun.ac.uk |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD000142
- Label: PRIDE project
- Name: Streptococcus uberis extracellular proteome