⮝ Full datasets listing

PXD000142

PXD000142 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleStreptococcus uberis extracellular proteome
DescriptionS. uberis proteins from sub-cellular fractions (both cell wall-attached and secreted) were separated with SDS-PAGE, trypsine digested and identified with MS/MS analysis. Extracellular proteins were clustered into functional group based on in silico analysis. Concerning the database search: Mascot 2.2.0 was used with the following parameters: significance threshold p<0.05, Mascot MS/MS ion search : database NCBI, allow up to 1 miss cleavage, fixed modification - carbamidomethyl(C), variable modification- oxidation, peptide tol. +/- 1.5 Da, MS/MS tol. +/- 0.5 Da, monoisotopic.
HostingRepositoryPRIDE
AnnounceDate2024-10-07
AnnouncementXMLSubmission_2024-10-07_08:48:53.316.xml
DigitalObjectIdentifierhttps://dx.doi.org/10.6019/PXD000142
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterAnita Jaglarz
SpeciesList scientific name: Streptococcus; NCBI TaxID: 1349;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue
InstrumentBruker Daltonics esquire series; esquire 6000
Dataset History
RevisionDatetimeStatusChangeLog Entry
02013-02-07 02:41:11ID requested
12013-02-13 05:26:17announced
12014-07-28 00:29:37announced
22024-10-07 08:48:53announced2024-10-07: Updated project metadata.
Publication List
10.6019/PXD000142;
Keyword List
submitter keyword: MS/MS,Streptococcus uberis
Contact List
Anita Jaglarz
contact affiliationDisease Control
contact emailanita.jaglarz@moredun.ac.uk
lab head
Anita Jaglarz
contact affiliationDisease Control
contact emailanita.jaglarz@moredun.ac.uk
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2013/02/PXD000142
PRIDE project URI
Repository Record List
[ + ]