PXD000105

PXD000105 is an original dataset announced via ProteomeXchange.

Title	An extensive proteome map of tomato (Solanum lycopersicum) fruit pericarp
Description	Fruit pericarp at two stages, cell expasion and orange red. From Solaunm Lycopersicum and Solaunm Lycopersicum var cerasiforme genotypes. Two Dimensional Polyacrylamide Gel Electrophoresis (Coomasie staining, Band excision, Enzyme digestion) LC/MS (Thermo Finnigan LTQ XL) Software processing (X! Tandem, CYCLONE (2010.12.01.1)) Databases (Contaminants database is a home-made database. It is a set of 25 proteic sequences corresponding to proteins that could be present in the samples, 21 correspond with keratins, 2 with trypsin and 2 with bovin serum albumins. 17 sequences come from SwissProt and 8 from TrEMBL. ITAG2.3 database is the set of proteic sequences predicted in the version 2.3 of the annotation of the tomate genome published by the ITAG group (ftp.solgenomics.net))
HostingRepository	PRIDE
AnnounceDate	2014-07-25
AnnouncementXML	Submission_2014-07-25_00:46:54.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Mathilde Causse
SpeciesList	scientific name: Solanum lycopersicum (Tomato) (Lycopersicon esculentum); NCBI TaxID: 4081;
ModificationList	No PTMs are included in the dataset
Instrument	LTQ

Revision	Datetime	Status	ChangeLog Entry
0	2012-12-12 02:51:43	ID requested
1	2013-09-11 05:13:24	announced
1	2014-05-21 08:39:01	announced
⏵ 2	2014-07-25 00:46:55	announced	Updated project metadata.

Xu J, Pascual L, Aurand R, Bouchet JP, Valot B, Zivy M, Causse M, Faurobert M, An extensive proteome map of tomato (Solanum lycopersicum) fruit pericarp. Proteomics, 13(20):3059-63(2013) [pubmed]

submitter keyword: Tomato, Fruit, Proteome

Mathilde Causse
contact affiliation	Institut National de la Recherche Agronomique (INRA, France)
contact email	Mathilde.Causse@avignon.inra.fr
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2013/09/PXD000105

PRIDE project URI

• PRIDE
  1. PXD000105
     1. Label: PRIDE project
     2. Name: An extensive proteome map of tomato (Solanum lycopersicum) fruit pericarp