PXD000085
PXD000085 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Human Chr18. 25 synthetic peptides for 21 proteins (Zgoda, et al.) |
Description | Dataset QC0 was acquired to elaborate the transition groups for the proteotypic peptides of 21 human proteins encoded by chromosome 18. SRM-data was acquired using the synthetic peptide mixtures under the conditions of slight sample overloading on LC column. Preliminary transition groups were extracted from the results of MRM scouting of depleted plasma and liver and organized into 5 scheduled MRM assays named A to E with least overlapping of RT-window of proteotypic peptides. Decoy transitions were generated for each assay by ADD_RANDOM algorithm of mGen. |
HostingRepository | PeptideAtlas |
AnnounceDate | 2014-03-12 |
AnnouncementXML | Submission_2014-03-12_13:28:05.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Aleksey Filimonov |
SpeciesList | scientific name: Homo sapiens; NCBI TaxID: 9606; |
ModificationList | No PTMs are included in the dataset |
Instrument | Agilent 6410 Triple Quad |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2012-12-05 16:43:46 | ID requested | |
1 | 2012-12-06 08:42:50 | announced | |
2 | 2012-12-11 17:33:45 | announced | missing |
⏵ 3 | 2014-03-12 13:28:06 | announced | update LabHead |
Publication List
Zgoda VG, Kopylov AT, Tikhonova OV, Moisa AA, Pyndyk NV, Farafonova TE, Novikova SE, Lisitsa AV, Ponomarenko EA, Poverennaya EV, Radko SP, Khmeleva SA, Kurbatov LK, Filimonov AD, Bogolyubova NA, Ilgisonis EV, Chernobrovkin AL, Ivanov AS, Medvedev AE, Mezentsev YV, Moshkovskii SA, Naryzhny SN, Ilina EN, Kostrjukova ES, Alexeev DG, Tyakht AV, Govorun VM, Archakov AI, Chromosome 18 transcriptome profiling and targeted proteome mapping in depleted plasma, liver tissue and HepG2 cells. J Proteome Res, 12(1):123-34(2013) [pubmed] |
Keyword List
curator keyword: selected reaction monitoring, SRM, targeted |
Contact List
Aleksey Filimonov | |
---|---|
contact affiliation | IBMC |
contact email | filimonov.a.d@gmail.com |
dataset submitter | |
Alexander Archakov | |
contact affiliation | IBMC |
contact email | alexander.archakov@ibmc.msk.ru |
lab head |
Full Dataset Link List
PeptideAtlas dataset URI |
PASSEL experiment URI |
PASSEL transition group browser URI |