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PXD000085

PXD000085 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleHuman Chr18. 25 synthetic peptides for 21 proteins (Zgoda, et al.)
DescriptionDataset QC0 was acquired to elaborate the transition groups for the proteotypic peptides of 21 human proteins encoded by chromosome 18. SRM-data was acquired using the synthetic peptide mixtures under the conditions of slight sample overloading on LC column. Preliminary transition groups were extracted from the results of MRM scouting of depleted plasma and liver and organized into 5 scheduled MRM assays named A to E with least overlapping of RT-window of proteotypic peptides. Decoy transitions were generated for each assay by ADD_RANDOM algorithm of mGen.
HostingRepositoryPeptideAtlas
AnnounceDate2014-03-12
AnnouncementXMLSubmission_2014-03-12_13:28:05.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterAleksey Filimonov
SpeciesList scientific name: Homo sapiens; NCBI TaxID: 9606;
ModificationListNo PTMs are included in the dataset
InstrumentAgilent 6410 Triple Quad
Dataset History
RevisionDatetimeStatusChangeLog Entry
02012-12-05 16:43:46ID requested
12012-12-06 08:42:50announced
22012-12-11 17:33:45announcedmissing
32014-03-12 13:28:06announcedupdate LabHead
Publication List
Zgoda VG, Kopylov AT, Tikhonova OV, Moisa AA, Pyndyk NV, Farafonova TE, Novikova SE, Lisitsa AV, Ponomarenko EA, Poverennaya EV, Radko SP, Khmeleva SA, Kurbatov LK, Filimonov AD, Bogolyubova NA, Ilgisonis EV, Chernobrovkin AL, Ivanov AS, Medvedev AE, Mezentsev YV, Moshkovskii SA, Naryzhny SN, Ilina EN, Kostrjukova ES, Alexeev DG, Tyakht AV, Govorun VM, Archakov AI, Chromosome 18 transcriptome profiling and targeted proteome mapping in depleted plasma, liver tissue and HepG2 cells. J Proteome Res, 12(1):123-34(2013) [pubmed]
Keyword List
curator keyword: selected reaction monitoring, SRM, targeted
Contact List
Aleksey Filimonov
contact affiliationIBMC
contact emailfilimonov.a.d@gmail.com
dataset submitter
Alexander Archakov
contact affiliationIBMC
contact emailalexander.archakov@ibmc.msk.ru
lab head
Full Dataset Link List
PeptideAtlas dataset URI
PASSEL experiment URI
PASSEL transition group browser URI