PXD000076

PXD000076 is an original dataset announced via ProteomeXchange.

Title	Shortgun Proteomic analysis of two Bartonella quintana strains
Description	Proteomic analysis two strains of Bartonella quintana using In-solution digestion followed by Stron Cation Exchange (SCX) and RP nano-LC-MS/MS
HostingRepository	PRIDE
AnnounceDate	2013-06-03
AnnouncementXML	Submission_2013-06-03_06:40:02.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD000076
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Shibu Krishnan
SpeciesList	scientific name: Bartonella quintana (Rochalimaea quintana); NCBI TaxID: 803; scientific name: Bartonella quintana JK 31; NCBI TaxID: 1134506;
ModificationList	monohydroxylated residue; neutral loss: 63.998285; iodoacetamide derivatized residue
Instrument	mass analyzer type

Revision	Datetime	Status	ChangeLog Entry
0	2012-11-28 06:42:03	ID requested
1	2013-06-03 04:31:54	announced
1	2014-07-28 00:25:42	announced
⏵ 2	2013-06-03 06:40:02	announced	Add reference

Fabietti A, Gaspari M, Krishnan S, Quirino A, Liberto MC, Cuda G, Foc, à A, Shotgun proteomic analysis of two Bartonella quintana strains. Proteomics, 13(8):1375-8(2013) [pubmed]

submitter keyword: Bartonella quintana, JK 31, LC-MSMS

Dr. Alessandra Fabietti
contact attribute	alessandra.bio@tiscali.it
contact affiliation	University Magna Graecia of Catanzaro
contact email	alessandra.bio@tiscali.it
Shibu Krishnan
contact affiliation	Laboratory of Proteomics and Mass spectrometry, University Magna Graecia of Catanzaro, Italy
contact email	kshibu@gmail.com

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/2013/06/PXD000076

• PRIDE
  1. 27965
     1. InstrumentRef: INSTRUMENT_1
     2. Label: Strain JK31; Third replicate
     3. ModificationList: monohydroxylated residue, neutral loss, iodoacetamide derivatized residue,
     4. Name: Bartonella quintana - Strain JK31; Third replicate
     5. PublicationRef: PMID23450663
  2. 27968
     1. InstrumentRef: INSTRUMENT_1
     2. Label: Strain Oklahoma; Second replicate
     3. ModificationList: monohydroxylated residue, neutral loss, iodoacetamide derivatized residue,
     4. Name: Bartonella quintana - Strain Oklahoma; Second replicate
     5. PublicationRef: PMID23450663
  3. 27964
     1. InstrumentRef: INSTRUMENT_1
     2. Label: Strain JK31; Second replicate
     3. ModificationList: monohydroxylated residue, neutral loss, iodoacetamide derivatized residue,
     4. Name: Bartonella quintana - Strain JK31; Second replicate
     5. PublicationRef: PMID23450663
  4. 27966
     1. InstrumentRef: INSTRUMENT_1
     2. Label: Strain JK31; Total
     3. ModificationList: monohydroxylated residue, neutral loss, iodoacetamide derivatized residue,
     4. Name: Bartonella quintana - Strain JK31; Total
     5. PublicationRef: PMID23450663
  5. 27969
     1. InstrumentRef: INSTRUMENT_1
     2. Label: Strain Oklahoma; Third replicate
     3. ModificationList: monohydroxylated residue, neutral loss, iodoacetamide derivatized residue,
     4. Name: Bartonella quintana - Strain Oklahoma; Third replicate
     5. PublicationRef: PMID23450663
  6. 27967
     1. InstrumentRef: INSTRUMENT_1
     2. Label: Strain Oklahoma; First replicate
     3. ModificationList: monohydroxylated residue, neutral loss, iodoacetamide derivatized residue,
     4. Name: Bartonella quintana - Strain Oklahoma; First replicate
     5. PublicationRef: PMID23450663
  7. 27963
     1. InstrumentRef: INSTRUMENT_1
     2. Label: Bartonella quintana - Strain JK31; first replicate-Nov-2012
     3. ModificationList: monohydroxylated residue, neutral loss, iodoacetamide derivatized residue,
     4. Name: Bartonella quintana Shortgun analysis using LC-MS/MS
     5. PublicationRef: PMID23450663
  8. 27970
     1. InstrumentRef: INSTRUMENT_1
     2. Label: Strain Oklahoma; Total
     3. ModificationList: monohydroxylated residue, neutral loss, iodoacetamide derivatized residue,
     4. Name: Bartonella quintana - Strain Oklahoma; Total
     5. PublicationRef: PMID23450663