PXD000013

PXD000013 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	iQUARI
Description	Study on the MS1 interference problem for reporter ion quantification using orthogonal proteomes: human and pyrococcus furiosus.
HostingRepository	PRIDE
AnnounceDate	2012-10-03+01:00
AnnouncementXML	Submission_2012-10-26_13:00:10.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD000013
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Lennart Martens
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Pyrococcus furiosus; NCBI TaxID: 2261;
ModificationList	iTRAQ4plex114: 144.105918; iTRAQ4plex114: 144.105918; iTRAQ4plex114: 144.105918; Carbamidomethyl: 57.021464; Oxidation: 15.994915
Instrument	LTQ Orbitrap

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2012-08-06 01:25:08	ID requested
1	2012-08-13 04:53:36	announced
1	2014-07-28 00:19:06	announced
2	2012-08-13 08:52:16	announced	missing
3	2012-08-16 03:37:49	announced	missing
4	2012-10-03 02:48:15	announced	missing
5	2012-10-03 02:51:21	announced	missing
⏵ 6	2012-10-26 13:00:10	announced	missing

Publication List

Vaudel M, Burkhart JM, Radau S, Zahedi RP, Martens L, Sickmann A, Integral quantification accuracy estimation for reporter ion-based quantitative proteomics (iQuARI). J Proteome Res, 11(10):5072-80(2012) [pubmed]

Vaudel M, Burkhart JM, Radau S, Zahedi RP, Martens L, Sickmann A, Integral quantification accuracy estimation for reporter ion-based quantitative proteomics (iQuARI). J Proteome Res, 11(10):5072-80(2012) [pubmed]

Keyword List

submitter keyword: Human, Pyrococcus furiosus, iTRAQ

submitter keyword: Human, Pyrococcus furiosus, iTRAQ

Contact List

Lennart Martens
contact affiliation	Department of Medical Protein Research, VIB, Department of Biochemistry, Ghent University, Ghent, Belgium
contact email	lennart.martens@UGent.be

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/2012/08/PXD000013

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/2012/08/PXD000013

Repository Record List

[ + ]

PRIDE
1. 27088
  1. InstrumentRef: LTQ-Orbitrap
  2. Label: illustrative example 185min 1mz Pyrococcus furiosus replicate 1
  3. ModificationList: iTRAQ4plex114, iTRAQ4plex114, iTRAQ4plex114, Oxidation, Carbamidomethyl,
  4. Name: iQUARI illustrative example 185min 1mz Pyrococcus furiosus replicate 1
  5. PublicationRef: PMID22874012
2. 27082
  1. InstrumentRef: LTQ-Orbitrap
  2. Label: iQUARI HeLa human
  3. ModificationList: iTRAQ4plex114, iTRAQ4plex114, iTRAQ4plex114, Carbamidomethyl, Oxidation,
  4. Name: iQUARI proof of principle HeLa human
  5. PublicationRef: PMID22874012
3. 27092
  1. InstrumentRef: LTQ-Orbitrap
  2. Label: illustrative example 185min 2mz Pyrococcus furiosus replicate 1
  3. ModificationList: iTRAQ4plex114, iTRAQ4plex114, Carbamidomethyl, iTRAQ4plex114, Oxidation,
  4. Name: iQUARI illustrative example 185min 2mz Pyrococcus furiosus replicate 1
  5. PublicationRef: PMID22874012
4. 27089
  1. InstrumentRef: LTQ-Orbitrap
  2. Label: illustrative example 185min 1mz Pyrococcus furiosus replicate 2
  3. ModificationList: iTRAQ4plex114, iTRAQ4plex114, Oxidation, iTRAQ4plex114, Carbamidomethyl,
  4. Name: iQUARI illustrative example 185min 1mz Pyrococcus furiosus replicate 2
  5. PublicationRef: PMID22874012
5. 27093
  1. InstrumentRef: LTQ-Orbitrap
  2. Label: illustrative example 185min 2mz Pyrococcus furiosus replicate 2
  3. ModificationList: Oxidation, iTRAQ4plex114, iTRAQ4plex114, Carbamidomethyl, iTRAQ4plex114,
  4. Name: iQUARI illustrative example 185min 2mz Pyrococcus furiosus replicate 2
  5. PublicationRef: PMID22874012
6. 27084
  1. InstrumentRef: LTQ-Orbitrap
  2. Label: iQUARI platelet human
  3. ModificationList: iTRAQ4plex114, iTRAQ4plex114, Carbamidomethyl, Oxidation, iTRAQ4plex114,
  4. Name: iQUARI proof of principle platelet human
  5. PublicationRef: PMID22874012
7. 27086
  1. InstrumentRef: LTQ-Orbitrap
  2. Label: illustrative example 185min 1mz human replicate 1
  3. ModificationList: iTRAQ4plex114, iTRAQ4plex114, Carbamidomethyl, Oxidation, iTRAQ4plex114,
  4. Name: iQUARI illustrative example 185min 1mz human replicate 1
  5. PublicationRef: PMID22874012
8. 27090
  1. InstrumentRef: LTQ-Orbitrap
  2. Label: illustrative example 185min 2mz human replicate 1
  3. ModificationList: iTRAQ4plex114, iTRAQ4plex114, Oxidation, Carbamidomethyl, iTRAQ4plex114,
  4. Name: iQUARI illustrative example 185min 2mz human replicate 1
  5. PublicationRef: PMID22874012
9. 27096
  1. InstrumentRef: LTQ-Orbitrap
  2. Label: illustrative example 95min 2mz Pyrococcus furiosus replicate 1
  3. ModificationList: Oxidation, iTRAQ4plex114, iTRAQ4plex114, iTRAQ4plex114, Carbamidomethyl,
  4. Name: iQUARI illustrative example 95min 2mz Pyrococcus furiosus replicate 1
  5. PublicationRef: PMID22874012
10. 27091
  1. InstrumentRef: LTQ-Orbitrap
  2. Label: illustrative example 185min 2mz human replicate 2
  3. ModificationList: iTRAQ4plex114, iTRAQ4plex114, Carbamidomethyl, Oxidation, iTRAQ4plex114,
  4. Name: iQUARI illustrative example 185min 2mz human replicate 2
  5. PublicationRef: PMID22874012
11. 27095
  1. InstrumentRef: LTQ-Orbitrap
  2. Label: illustrative example 95min 2mz human replicate 2
  3. ModificationList: iTRAQ4plex114, iTRAQ4plex114, Carbamidomethyl, Oxidation, iTRAQ4plex114,
  4. Name: iQUARI illustrative example 95min 2mz human replicate 2
  5. PublicationRef: PMID22874012
12. 27085
  1. InstrumentRef: LTQ-Orbitrap
  2. Label: iQUARI platelet Pyrococcus furiosus
  3. ModificationList: iTRAQ4plex114, iTRAQ4plex114, iTRAQ4plex114, Oxidation, Carbamidomethyl,
  4. Name: iQUARI proof of principle platelet Pyrococcus furiosus
  5. PublicationRef: PMID22874012
13. 27094
  1. InstrumentRef: LTQ-Orbitrap
  2. Label: illustrative example 95min 2mz human replicate 1
  3. ModificationList: iTRAQ4plex114, Oxidation, iTRAQ4plex114, iTRAQ4plex114, Carbamidomethyl,
  4. Name: iQUARI illustrative example 95min 2mz human replicate 1
  5. PublicationRef: PMID22874012
14. 27097
  1. InstrumentRef: LTQ-Orbitrap
  2. Label: illustrative example 95min 2mz Pyrococcus furiosus 2
  3. ModificationList: iTRAQ4plex114, Carbamidomethyl, iTRAQ4plex114, Oxidation, iTRAQ4plex114,
  4. Name: iQUARI illustrative example 95min 2mz Pyrococcus furiosus replicate 2
  5. PublicationRef: PMID22874012
15. 27083
  1. InstrumentRef: LTQ-Orbitrap
  2. Label: iQUARI HeLa Pyrococcus furiosus
  3. ModificationList: iTRAQ4plex114, iTRAQ4plex114, iTRAQ4plex114, Carbamidomethyl, Oxidation,
  4. Name: iQUARI proof of principle HeLa Pyrococcus furiosus
  5. PublicationRef: PMID22874012
16. 27087
  1. InstrumentRef: LTQ-Orbitrap
  2. Label: illustrative example 185min 1mz human replicate 2
  3. ModificationList: iTRAQ4plex114, iTRAQ4plex114, Oxidation, iTRAQ4plex114, Carbamidomethyl,
  4. Name: iQUARI illustrative example 185min 1mz human replicate 2
  5. PublicationRef: PMID22874012