Below is a listing of publicly accessible ProteomeXchange datasets. Additional datasets will become visible as they are released.


Search metadata for ProteomeXchange datasets: (e.g. "liver", "musculus", "5600", etc.)
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Dataset Identifier Title Repos Species Instrument Publication Primary Submitter LabHead Announcement Date
PXD001611 Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium PRIDE Mycoplasma pneumoniae M29 LTQ Orbitrap Lluch-Senar et al. (2015) Javier Delgado Luis Serrano 2015-03-03
PXD000719 Rat Brain LC-MS/MS PRIDE Rattus norvegicus LTQ Orbitrap Elite Wildburger et al. (2015) Norelle Wildburger Carol Lynn Nilsson 2015-03-03
PXD000980 The proteome of Synechocystis sp. PCC 6803 cells grown under light-activated heterotrophic growth PRIDE Synechocystis sp. PCC 6803 Thermo Scientific instrument model Plohnke et al. (2015) Nicole Plohnke Sascha Rexroth 2015-03-03
PXD001349 Redox proteomics of Arabidopsis cells under salicylate and flg22 treatments PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Liu et al. (2015) Pei Liu Yiji Xia 2015-03-03
PXD001860 PNNL Biodiversity Library - Microbial Section MassIVE Acidiphilium cryptum JF-5, Actinosynnema mirum DSM 43827, Anabaena variabilis, Anaeromyxobacter dehalogenans, Anaplasma phagocytophilum, Arthrobacter sp. FB24, Bacillus anthracis str. Ames, Bacillus anthracis str. Sterne, Bacillus subtilis subsp. subtilis LTQ; LTQ FT; LTQ Orbitrap; LTQ Orbitrap Velos Dataset with its publication pending Sam Payne Sam Payne 2015-03-02
PXD001681 HA-mSLX4 wild type and SIMdependent interactors PRIDE Homo sapiens , Mus musculus Q Exactive González-Prieto et al. (2015) Román González-Prieto Alfred C O Vertegaal 2015-03-02
PXD001594 Specific growth rate-dependent proteome resource allocation dynamics in Escherichia coli PRIDE Escherichia coli LTQ Orbitrap Peebo et al. (2015) Karl Peebo Raivo Vilu 2015-02-27
PXD001362 Direct evidence of milk consumption from ancient human dental calculus, UK PRIDE Homo sapiens LTQ Orbitrap Velos; Q Exactive; LTQ Orbitrap Elite Warinner et al. (2014) Jessica Hendy Matthew Collins 2015-02-26
PXD001359 Direct evidence of milk consumption from ancient human dental calculus, northern southwest Asia PRIDE Homo sapiens Q Exactive Warinner et al. (2014) Jessica Hendy Matthew Collins 2015-02-26
PXD001272 Giardia duodenalis Assemblage A Quantitative Proteomics PRIDE Giardia intestinalis assemblage A LTQ Dataset with its publication pending Samantha Emery Professor Paul A Haynes 2015-02-26
PXD001573 Enrichment or depletion? The impact of stool pretreatment on metaproteomic characterization of the human gut microbiota PRIDE Homo sapiens LTQ Orbitrap Velos Tanca et al. (2015) Alessandro Tanca Maria Filippa Addis 2015-02-25
PXD001361 Direct evidence of milk consumption from ancient human dental calculus, northern Europe PRIDE Homo sapiens LTQ Orbitrap Velos; Q Exactive Warinner et al. (2014) Jessica Hendy Matthew Collins 2015-02-25
PXD001360 Direct evidence of milk consumption from ancient human dental calculus, central Europe PRIDE Homo sapiens Q Exactive Warinner et al. (2014) Jessica Hendy Matthew Collins 2015-02-25
PXD001357 Direct evidence of milk consumption from ancient human dental calculus, St Helena PRIDE Homo sapiens Q Exactive; LTQ Orbitrap Elite Warinner et al. (2014) Jessica Hendy Matthew Collins 2015-02-25
PXD001241 ERLIC-based strategies for combined quantitative proteome and phosphoproteome analysis with limited sample amounts PRIDE Homo sapiens LTQ Orbitrap Velos Loroch et al. (2015) Stefan Loroch Albert Sickmann 2015-02-25
PXD001644 Proteomic analysis of Bombus terrestris queen haemolymph PRIDE Bombus terrestris (Buff-tailed bumblebee) (Apis terrestris) LTQ Orbitrap XL Dataset with its publication pending James Carolan James C Carolan 2015-02-24
PXD001612 Roles of proteome dynamics and cytokinin signaling in root-to-hypocotyl ratio changes induced by shading roots of Arabidopsis seedlings PRIDE Arabidopsis thaliana (Mouse-ear cress) maXis Novák et al. (2015) Martin Cerny Martin Cerny 2015-02-23
PXD001213 Tissue Engineered Rat Lung Proteomics PRIDE Rattus norvegicus LTQ Orbitrap Velos Hill et al. (2015) Ryan Hill Kirk Hansen 2015-02-20
PXD000808 Transcriptome and Proteomic Analysis of Mango (Mangifera indica Linn) Fruits PRIDE Mangifera indica LTQ Orbitrap Velos Wu et al. (2014) Hongxia Wu Hongxia Wu 2015-02-20
PXD001527 Proteomics of muscle chronological ageing in post-menopausal women PRIDE Homo sapiens LTQ Velos Gueugneau et al. (2014) Coudy-Gandilhon cécile Bechet Daniel 2015-02-19
PXD000164 A Metaproteomics Approach to Elucidate Host and Pathogen Protein Expression during Catheter-Associated Urinary Tract Infections PRIDE Pseudomonas sp., Homo sapiens , Morganella, Morganella LTQ Orbitrap Velos Lassek et al. (2015) Christian Lassek Katharina Riedel 2015-02-17
PXD001377 Unraveling Lysine Deacetylase Inhibitor Specificities for Endogenous Acetylation Sites PRIDE Homo sapiens , Mus musculus Q Exactive Dataset with its publication pending Christian Schölz Chunaram Choudhary 2015-02-16
PXD000876 Proteomic analysis of three Borrelia burgdorferi sensu lato species and disseminating clones: relevance for Lyme vaccine design. PRIDE Borrelia burgdorferi 297 ion trap Schnell et al. (2014) Schnell Gilles Laurence Sabatier 2015-02-16
PXD001811 Proteome analysis of human lymphotropic tumor viruses MassIVE Homo sapiens LTQ; LTQ XL ETD Dresang et al. (2011) Matthew Monroe Richard D. Smith 2015-02-12
PXD001467 Proteome resource allocation in bacteria PRIDE Escherichia coli TripleTOF 5600 Dataset with its publication pending Sheng Hui Terence Hwa 2015-02-12
PXD001401 Phytophthora hyphae and cysts PRIDE Phytophthora sojae, Phytophthora pisi LTQ Orbitrap Velos Hosseini et al. (2015) Svante Resjo Erik Andreasson 2015-02-10
PXD001536 Fast Profiling of Protease Specificity reveals similar substrate specificities for cathepsins K, L and S PRIDE Homo sapiens LTQ Orbitrap Velos Vizovišek et al. (2015) Emmy Van Quickelberghe Kris Gevaert 2015-02-10
PXD001293 Comaprison of the phagosome proteome of bone marrow-derived macrophages and RAW264.7 PRIDE Mus musculus Q Exactive Guo et al. (2014) Matthias Trost Matthias Trost 2015-02-10
PXD001553 Proteomic profiling of cathepsin specificity by FPPS PRIDE Homo sapiens LTQ Orbitrap Velos Vizovišek et al. (2015) Marko Fonovic Marko Fonovic 2015-02-10
PXD001479 The gut microbiota affects the mucus barrier PRIDE Mus musculus LTQ Orbitrap Jakobsson et al. (2015) Ana M. Rodriguez-Pineiro Gunnar C. Hansson 2015-02-09
PXD000298 Neospora Caninum whole proteome study PRIDE Neospora Caninum (strain Liverpool) LTQ Orbitrap Velos Dataset with its publication pending Ritesh Krishna Ritesh Krishna 2015-02-09
PXD000297 Toxoplsama Gondii whole proteome study PRIDE Toxoplasma gondii RH LTQ Orbitrap Dataset with its publication pending Ritesh Krishna Andrew Jones 2015-02-09
PXD001434 Interaction of cGMP-dependent protein kinase and HAP1 PRIDE Homo sapiens , Rattus norvegicus LTQ Orbitrap; LTQ Orbitrap Velos Corradini et al. (2015) Eleonora Corradini Albert J.R. Heck 2015-02-09
PXD001462 Identification of Alpha-Synuclein Interacting Synaptosomal Proteins PRIDE Sus scrofa domesticus (domestic pig) LTQ Orbitrap Betzer et al. (2015) Min Shi Poul Henning Jensen 2015-02-09
PXD001448 Myotubularin-related proteins control abscission_StDenis_MTMR_P84_VS6-7-8-11-12 MassIVE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Gingras Lab Anne-Claude Gingras 2015-02-06
PXD001641 Single muscle fiber proteomics reveals unexpected mitochondrial specialization PRIDE Mus musculus Q Exactive Murgia et al. (2015) Mario Oroshi Matthias Mann 2015-02-05
PXD000782 A quantitative proteomics tool to identify DNA-protein interactions in primary cells or blood PRIDE Homo sapiens Q Exactive Hubner et al. (2015) Nina Hubner Hendrik G. Stunnenberg 2015-02-04
PXD000672 PCT-SWATH kidney tissues PRIDE Homo sapiens TripleTOF 5600 Dataset with its publication pending Tiannan Guo Ruedi Aebersold 2015-02-04
PXD001065 Compartment resolved reference map from highly purified naive, activated, effector and memory CD8+ cells PRIDE Mus musculus LTQ Orbitrap Velos Zanker et al. (2015) Janina Tomm Martin von Bergen 2015-02-04
PXD001648 Characterization of the E.coli proteome and its modifications during growth and ethanol stress PRIDE Escherichia coli LTQ Orbitrap Elite Dataset with its publication pending Karsten Krug Boris Macek 2015-02-03
PXD000660 TAILS with Arabidopsis thaliana wilde typ, tic56-1and ppi2 PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Köhler et al. (2015) Sacha Baginsky Sacha Baginsky 2015-02-03
PXD001207 The proteome of tic56-1 plastids after thermolysin treatment PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Köhler et al. (2015) Sacha Baginsky Sacha Baginsky 2015-02-03
PXD000737 iTRAQ-based quantitative proteomics analysis of human HNSCC cells PRIDE Homo sapiens LTQ Orbitrap Syed et al. (2015) Akhilesh Pandey Akhilesh Pandey 2015-02-02
PXD001180 Human brain phosphoproteome analyzed by refined phosphopeptide enrichment and high resolution LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Elite Tan et al. (2015) xusheng wang Junmin Peng 2015-02-02
PXD001677 SIM-XL: a powerful and user-friendly tool for peptide cross-linking analysis PRIDE Homo sapiens Q Exactive Lima et al. (2015) Diogo Borges Lima Paulo Costa Carvalho 2015-02-02
PXD001771 ddDT results from 2014 MCP alpha-lytic protease proteomics paper MassIVE Schizosaccharomyces pombe instrument model: LTQ Orbitrap Velos ETD Dataset with its publication pending Jesse Meyer EA Komives 2015-01-30
PXD000994 TurboRAW2MGF: Removing isobaric-related ions improves the peptide/protein identification PRIDE Homo sapiens , Rattus norvegicus LTQ Orbitrap Velos Sheng et al. (2014) Quanhu Sheng Quanhu Sheng 2015-01-30
PXD001101 Identifying novel targets of oncogenic EGF receptor signaling in lung cancer through global phosphoproteomics PRIDE Homo sapiens LTQ Orbitrap; LTQ Orbitrap Elite Zhang et al. (2015) Udayan Guha Udayan Guha 2015-01-30
PXD001117 Human Cardiac Stem Cells Receptome PRIDE Homo sapiens LTQ Orbitrap Elite Gomes-Alves et al. (2014) Patrícia Gomes-Alves Paula M. Alves 2015-01-30
PXD001183 Proteomic characterisation of microtubule-dependent modulation of adhesion complexes PRIDE Homo sapiens LTQ Orbitrap Elite Ng et al. (2014) Daniel Ng Martin James Humphries 2015-01-30
PXD001493 YBX1 interacting protein PRIDE Homo sapiens LTQ Orbitrap Wang et al. (2014) Ruibing Chen Ruibing Chen 2015-01-30
PXD001524 Human testicular matrix PRIDE Homo sapiens LTQ Orbitrap Baert et al. (2015) Michael Landreh Hans Jornvall 2015-01-30
PXD001574 Phospho-iTRAQ PRIDE Homo sapiens Q Exactive; TripleTOF 5600; Synapt MS Glibert et al. (2015) Maarten Dhaenens Dieter Deforce 2015-01-30
PXD001761 Spike-in dilution series in S. pyogenes cell lysate, (Chawade et al. 2014) PeptideAtlas Streptococcus pyogenes TSQ Vantage Chawade et al. (2014) Fredrik Levander Fredrik Levander 2015-01-29
PXD001760 SWATH Analysis of Yeast Proteome over Time in Response to Osmotic Stress: SRM Dataset PeptideAtlas Saccharomyces cerevisiae TSQ Vantage Selevsek et al. (2015) Lucia Espona Pernas Ruedi Aebersold 2015-01-29
PXD001759 Mouse Liver Proteins implicated in Metabolism and Type 2 Diabetes. PeptideAtlas Mus musculus 4000 QTRAP no publication Alexander Schäfer Prof. Dr. Marius Ueffing 2015-01-29
PXD001757 Study of EphA2 involvement in cancer cells TEM PeptideAtlas Homo sapiens TSQ Vantage Locard-Paulet, et al. (submitted) Marie Locard-Paulet Claus Jorgensen 2015-01-29
PXD001756 Targeted proteomic analyses of nasal lavage fluid in persulfate-challenged hairdressers with bleaching powder-associated rhinitis PeptideAtlas Homo sapiens QTRAP 5500 Mörtstedt et al. (2015) Neserin Ali Division of Occupational and Environmental Medicine 2015-01-29
PXD001755 RPD and SID calibration standards for four human plasma peptides in various complex matrices PeptideAtlas Homo sapiens 4000 QTRAP Yau et al. (2014) Yunki Yau Prof. Mark Raftery 2015-01-29
PXD001754 Identification of Biomarkers for the Diagnosis of Rickettsial Disease: Qualification PeptideAtlas Homo sapiens TSQ Vantage no publication Kizhake Soman Allan R. Brasier 2015-01-29
PXD001753 Helicobacter Pylori-Induced PUD Biomarkers Qualification PeptideAtlas Homo sapiens TSQ Vantage no publication Kizhake Soman Allan R. Brasier, MD 2015-01-29
PXD001752 Dengue Fever (Brazil) biomarkers - Qualification PeptideAtlas Homo sapiens TSQ Vantage no publication Kizhake Soman Allan R. Brasier 2015-01-29
PXD001751 Human Serum LC-MRM-MS data collected from two cohorts of HCC and cirrhosis patients PeptideAtlas Homo sapiens TSQ Vantage no publication Habtom Ressom Habtom W. Ressom 2015-01-29
PXD001750 Extended MRM/SRM experiment for 112 Mouse/Rat Brian Proteins PeptideAtlas Mus musculus QTRAP 5500 Wei, et al. (submitted) Christopher Colangelo Christopher Colangelo 2015-01-29
PXD001749 Targeted Proteome Pipeline and Assay for 112 Rat Brain Synaptic Proteins, Data Collection PeptideAtlas Rattus norvegicus TripleTOF 5600 Colangelo et al. (2014) Christopher Colangelo Christopher Colangelo 2015-01-29
PXD001748 Candidate Biomarkers for Invasive Aspergillosis, Verification PeptideAtlas Homo sapiens TSQ Vantage no publication Kizhake Soman Allan R. Brasier 2015-01-29
PXD001747 PBMC Proteomic Analysis for the Identification of Biomarkers of Chagasic Cardiomyopathy PeptideAtlas Homo sapiens TSQ Vantage no publication Kizhake Soman Allan R. Brasier 2015-01-29
PXD001746 Signal transduction reaction monitoring deciphers site-specific PI3K-mTOR/MAPK pathway dynamics PeptideAtlas Homo sapiens TSQ Vantage Graaf, et al. Erik de Graaf Albert J.R. Heck 2015-01-29
PXD001745 Automated Absolute and Relative Quantification of SRM Data PeptideAtlas Drosophila melanogaster TSQ Vantage Unpublished Sandra Goetze Erich Brunner 2015-01-29
PXD001744 Label-free quantification of sentinel proteins, phosphopeptides and degradation products PeptideAtlas Saccharomyces cerevisiae QTRAP 5500 Soste et al. (2014) Martin Soste Paola Picotti 2015-01-29
PXD000984 Quantitative phosphoproteomic analysis of IL-33 mediated signaling PRIDE Mus musculus LTQ Orbitrap Elite Pinto et al. (2015) Akhilesh Pandey Akhilesh Pandey 2015-01-29
PXD001455 Global quantitative proteomics reveals novel factors in the ecdysone signaling pathway in Drosophila melanogaster. PRIDE Drosophila melanogaster (Fruit fly) Q Exactive Sap et al. (2014) Jeroen Demmers Jeroen AA Demmers 2015-01-29
PXD001555 Differentiation-inducing factor (DIF) SILAC PRIDE Dictyostelium discoideum (Slime mold) LTQ Orbitrap Elite Sugden et al. (2014) Chris Sugden JEFF WILLIAMS 2015-01-28
PXD001186 A role for CPT1A to prevent blood vessel permeability revealed by in depth proteomics PRIDE Homo sapiens LTQ Orbitrap Elite Dataset with its publication pending Sara Zanivan Sara Zanivan 2015-01-28
PXD001656 Quantitative proteomic analysis of Burkholderia pseudomallei Bsa Type III secretion system effectors using hyper-secreting mutants PRIDE Burkholderia pseudomallei (strain K96243) LTQ Orbitrap Velos Dataset with its publication pending Charles Vander Broek Jo M. Stevens 2015-01-28
PXD001059 Differences in oocyte composition anticipate differences in embryo quality: a proteomic study in inbred mice PRIDE Mus musculus LTQ Orbitrap Velos Pfeiffer et al. (2014) Hannes Drexler Hannes C. A. Drexler 2015-01-28
PXD001153 Quantitative Phosphoproteomics Reveals Crosstalk Between Phosphorylation and O-GlcNAc in the DNA Damage Response Pathway PRIDE Mus musculus LTQ Orbitrap Velos Zhong et al. (2015) Akhilesh Pandey Akhilesh Pandey 2015-01-28
PXD001584 Importance of arginine trasporter ArgP in Francisella by comparative proteomics. PRIDE Francisella tularensis subsp. novicida (strain U112) Q Exactive Ramond et al. (2015) Chiara guerrera Ida Chiara GUERRERA 2015-01-28
PXD001194 PROMIS-Quan: a novel proteomic method for plasma biomarker quantification PRIDE Homo sapiens Q Exactive Dataset with its publication pending Tamar Geiger Tamar Geiger 2015-01-28
PXD000155 Proteomic analysis of integrin activation-state-dependent adhesion complexes PRIDE Homo sapiens instrument model: LTQ Velos; LTQ Velos Byron et al. (2015) Adam Byron 2015-01-27
PXD001370 Aging Mouse Brain Mitochondria LC-MS/MS PRIDE Mus musculus TripleTOF 5600 Stauch et al. (2014) Kelly Stauch Howard Fox 2015-01-27
PXD001733 Lenalidomide Causes Selective Degradation of IKZF1 and IKZF3 in Multiple Myeloma Cells MassIVE Homo sapiens Q Exactive Dataset with its publication pending Karl Clauser Steven A. Carr 2015-01-26
PXD001343 Characterization of the gila monster (Heloderma suspectum suspectum) venom proteome PRIDE Heloderma suspectum suspectum (Reticulate Gila monster) TripleTOF 5600 Sanggaard et al. (2015) Thomas F. Dyrlund Jan Johannes Enghild 2015-01-26
PXD001453 Spatial variation in transcript and protein abundance of Atlantic salmon during feeding migration in the Baltic Sea PRIDE Salmo salar (Atlantic salmon) LTQ Orbitrap Kanerva et al. (2014) Mirella Kanerva Kristiina A. Vuori 2015-01-26
PXD000979 K63 polyubiquitination is a new modulator of the oxidative stress response, SRM data PRIDE Saccharomyces cerevisiae (Baker's yeast) Q Exactive Silva, Finley & Vogel (2015) Gustavo Silva Christine Vogel 2015-01-26
PXD000960 K63 polyubiquitination is a new modulator of the oxidative stress response, shotgun data PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Silva, Finley & Vogel (2015) Gustavo Silva Christine Vogel 2015-01-26
PXD001126 Building high-quality assay libraries for targeted analysis of SWATH MS data PRIDE Saccharomyces cerevisiae (Baker's yeast) TripleTOF 5600 Dataset with its publication pending Ben Collins Ruedi Aebersold 2015-01-26
PXD001212 A mammalian transcription factor-specific peptide repository for targeted proteomics PRIDE Mus musculus LTQ Orbitrap Simicevic et al. (2014) Romain Hamelin Marc Moniatte 2015-01-23
PXD001082 Quantitative comparison of CSF proteins from T. b. gambiense and T. b. rhodesiense HAT patients PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Natalia Tiberti Jean-Charles Sanchez 2015-01-23
PXD001010 SWATH Analysis of Yeast Proteome over Time in Response to Osmotic Stress PRIDE Saccharomyces cerevisiae (Baker's yeast) TSQ Quantum; TripleTOF 5600 Selevsek et al. (2015) Lucia Espona Pernas Ruedi Aebersold 2015-01-22
PXD001587 DIA-Umpire: comprehensive computational framework for data independent acquisition proteomics PRIDE Escherichia coli, Homo sapiens Q Exactive; TripleTOF 5600 Tsou et al. (2015) Chih-Chiang Tsou Alexey I. Nesvizhskii 2015-01-21
PXD001005 Comparative phosphoproteomic analysis of mammalian renal glomeruli PRIDE Rattus norvegicus , Bos taurus LTQ Orbitrap Rinschen et al. (2014) Markus Rinschen Markus Rinschen 2015-01-16
PXD001246 Synechocystis 6803 LC-MS/MS PRIDE Synechocystis sp. PCC 6803 LTQ Orbitrap Elite Gao et al. (2014) Yingchun Wang Yingchun Wang 2015-01-16
PXD001068 Phosphoproteome dynamics in onset and maintenance of Oncogene-Induced Senescence, proteome dataset PRIDE Homo sapiens LTQ Orbitrap Velos de Graaf et al. (2014) Erik L. de Graaf Albert Heck 2015-01-15
PXD001667 BioID-based identification of SCF-BTrCP1/2 E3 ligase substrates MassIVE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Tharan Srikumar Brian Raught 2015-01-15
PXD001492 Yeast - phosphoproteome PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Hustedt et al. (2014) Ragna Sack Susan M Gasser 2015-01-12
PXD000523 Phosphoproteome dynamics in onset and maintenance of Oncogene-Induced Senescence, phosphoproteome dataset PRIDE Homo sapiens LTQ Orbitrap Velos de Graaf et al. (2014) Erik L. de Graaf Albert Heck 2015-01-12
PXD000394 Mass spectrometry of HLA-I peptidomes reveals strong effects of protein abundance and turnover on antigen presentation PRIDE Homo sapiens Q Exactive Dataset with its publication pending Mario Oroshi Matthias Mann 2015-01-12
PXD001394 Global and specific responses of the histone acetylome to systematic perturbation PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap Dataset with its publication pending Ignasi Forne Prof. Dr. Peter Becker 2015-01-09
PXD000033 ATM and ATR- dependent protein phosphorylation induced within 15 minutes after gamma irradiation in Arabidopsis thaliana PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Dataset with its publication pending Elisabeth Roitinger 2015-01-09
PXD001210 An Enhanced in vivo SILAC model for Quantification of Drug Metabolism Enzymes PRIDE Mus musculus LTQ Orbitrap MacLeod et al. (2015) Kenneth MacLeod Jeffrey Tze-Jen Huang 2015-01-09
PXD001647 Anopheles stephensi salivary gland LC-MS/MS PRIDE Anopheles stephensi (Asian malaria mosquito) ultraflex Dataset with its publication pending sonam vijay Dr. Arun Sharma 2015-01-08
PXD001651 Q-Exactive HCD data for FFPE colon tissues (five replicate RPLC experiments) MassIVE Homo sapiens Q Exactive Dataset with its publication pending David L. Tabb Daniel C. Liebler 2015-01-08
PXD001657 A Cell-based Systems Biology Assessment of Human Blood to Monitor Immune Responses After Influenza Vaccination PRIDE Homo sapiens LTQ Orbitrap Hoek et al. (2015) Andrew Link Andrew Link 2015-01-08
PXD001240 Benchmarking label-free quantification based on data-independent acquisition (DIA) workflows PRIDE Escherichia coli, Homo sapiens , Saccharomyces cerevisiae (Baker's yeast) Synapt MS Kuharev et al. (2014) Stefan Tenzer Stefan Tenzer 2015-01-07
PXD001184 Phosphoproteomic Analysis Suggests Compensatory Effects in the Piriform Cortex Region of the VX-Exposed Rat PRIDE Rattus norvegicus LTQ Orbitrap Elite Nirujogi et al. (2014) Jennifer Sekowski Jennifer W. Sekowski 2015-01-07
PXD001410 A Themis:SHP complex promotes T cell survival PRIDE Homo sapiens LTQ Orbitrap Paster et al. (2014) Kristin Katsch Professor Oreste Acuto 2015-01-07
PXD001296 Exoproteome of Aspergillus flavus corneal isolates and saprophytes PRIDE Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) LTQ Orbitrap Velos Selvam et al. (2014) Naveen Luke Dharmalingam Kuppamuthu 2015-01-07
PXD001224 A High-resolution Systems-wide Screen for Substrates of the SCFβTrCP Ubiquitin Ligase - reproducibility evaluation PRIDE Homo sapiens LTQ Orbitrap Low et al. (2014) Teck Yew Low Albert J.R. Heck 2015-01-06
PXD001088 A High-resolution Systems-wide Screen for Substrates of the SCFβTrCP Ubiquitin Ligase PRIDE Homo sapiens LTQ Orbitrap Elite Low et al. (2014) Teck Yew Low Albert J.R. Heck 2015-01-06
PXD000175 Proteomic analysis uncover a new function and mode of action for mDia2 PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending AFM Altelaar Maarten Altelaar 2015-01-06
PXD001529 Proteomic characterization of the role of Snail1 in the differentiation of 3T3-L1 fibroblasts PRIDE Mus musculus LTQ Orbitrap; LTQ Orbitrap Velos Pelaez-Garcia et al. (2014) Alberto Pelaez Garcia Ignacio Casal 2015-01-06
PXD001447 AP-MS analysis of sirtuin-4 interactions in human fibroblasts PRIDE Homo sapiens LTQ Orbitrap Velos Mathias et al. (2014) T Greco Ileana Cristea 2015-01-06
PXD001517 Iridovirus and Microsporidian Linked to Honey Bee Colony Decline MassIVE Apis mellifera, Nosema LTQ Dataset with its publication pending Giselle Knudsen Cramer, Robert A. 2015-01-05
PXD001634 KCMF1 links RAD6 to UBR4 and lysosome-mediated degradation MassIVE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Tharan Srikumar Brian Raught 2015-01-05
PXD000991 Method to identify novel proteoform peptides from salivary supernatant. PRIDE Homo sapiens LTQ Orbitrap Jagtap et al. (2014) Pratik Jagtap Timothy Griffin 2015-01-05
PXD001064 Quantitative variability of 342 plasma proteins in a human twin population PRIDE Homo sapiens TripleTOF 5600 Liu et al. (2015) Yansheng Liu Ruedi Aebersold 2015-01-05
PXD000549 Quantitative proteomics of the Neisseria gonorrhoeae cell envelope and membrane vesicles PRIDE Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) 4800 Proteomics Analyzer Zielke et al. (2014) Aleksandra Sikora Aleksandra E. Sikora 2014-12-19
PXD001445 Phosphoproteomic analyses reveal novel cross-modulation mechanisms between two signaling pathways in yeast PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Vaga et al. (2014) Stefania Vaga Ruedi Aebersold 2014-12-19
PXD001461 The E. coli effector EspJ blocks Src kinase activity via amidation and ADP-ribosylation PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Andreas Schlosser Andreas Schlosser 2014-12-19
PXD000497 Proteomics and phosphoproteomics analysis of melanoma BRAF PRIDE Homo sapiens Q Exactive; LTQ Orbitrap Velos; LTQ Orbitrap Elite Smit et al. (2014) Teck Yew Low 2014-12-19
PXD001406 Impact of Regulatory Variation from RNA to Protein PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Zia Khan Yoav Gilad 2014-12-19
PXD001198 In Vivo Assessment of Protease Dynamics in Cutaneous Wound Healing by Degradomics Analysis of Porcine Wound Exudates PRIDE Sus scrofa domesticus (domestic pig) LTQ Orbitrap Sabino et al. (2014) Ulrich auf dem Keller Ulrich auf dem Keller 2014-12-19
PXD000997 Comprehensive Identification of Phosphorylation Sites on the Numb Endocytic Adaptor Protein PRIDE Homo sapiens LTQ Orbitrap; LTQ Orbitrap Velos Krieger et al. (2014) Jonathan Krieger Jane McGlade 2014-12-16
PXD001616 A search for protein biomarkers links olfactory signal transduction to social immunity PRIDE Apis mellifera LTQ Orbitrap; LTQ FT Dataset with its publication pending Leonard Foster Leonard James Foster 2014-12-16
PXD001303 Analysis of epididymal sperm maturation by top-down mass spectrometry PRIDE Sus scrofa domesticus (domestic pig) LTQ Orbitrap Labas et al. (2015) Labas Valerie Valérie Labas 2014-12-16
PXD001379 LysargiNase cleavage specificity characterization PRIDE Escherichia coli QSTAR Huesgen et al. (2014) Pitter Huesgen Christopher M Overall 2014-12-16
PXD001378 Characterization of LysargiNase peptide fragmentation PRIDE Escherichia coli QSTAR Huesgen et al. (2014) Pitter Huesgen Christopher M Overall 2014-12-16
PXD001122 Specificity profiling of LysargiNase in comparison to trypsin PRIDE Escherichia coli QSTAR Huesgen et al. (2014) Pitter Huesgen Christopher M Overall 2014-12-16
PXD001121 Characterization of LysargiNase for use in phosphoproteomics experiments, part 1 PRIDE Homo sapiens LTQ Orbitrap Huesgen et al. (2014) Pitter Huesgen Christopher M. Overall 2014-12-16
PXD001114 Characterization of LysargiNase for use in phosphoproteomics experiments, partII PRIDE Homo sapiens LTQ Orbitrap Huesgen et al. (2014) Pitter Huesgen Christopher M. Overall 2014-12-16
PXD001113 LysargiNase and tryptic digest of MDA-MB 231 cell lysates PRIDE Homo sapiens LTQ Orbitrap Huesgen et al. (2014) Pitter Huesgen Christopher M Overall 2014-12-16
PXD000114 Metaproteomics of Premature Infant Gut Colonization PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Jacque Young 2014-12-16
PXD001352 Absolute protein quantification allows differentiation of cell specific metabolic routes and functions PRIDE Homo sapiens , Mus musculus Q Exactive Wiśniewski et al. (2014) Mario Oroshi Jacek R Wisniewski 2014-12-15
PXD000959 N-linked glycoproteome of human seminal plasma PRIDE Homo sapiens LTQ Orbitrap Velos Yang et al. (2014) zhou tao Jiahao Sha 2014-12-15
PXD001577 Functional characteristics of neonatal rat beta cells With distinct markers PRIDE Rattus norvegicus Synapt G2 MS Martens et al. (2014) Gertjan Kramer J.M.F.G Aerts 2014-12-12
PXD000814 Proteomics study of chaperone network in Escherichia coli PRIDE Escherichia coli Q Exactive Götzke et al. (2014) Gianluca Maddalo Albert J.R. Heck 2014-12-12
PXD001111 Combining solid phase extraction with ultra-short gradients in LC-MS/MS substantially improves protein identification per unit of time PRIDE Escherichia coli, Homo sapiens Q Exactive Binai et al. (2014) N. Binai Albert Heck 2014-12-12
PXD000899 Cell cycle dependent phosphorylation of transmembrane proteins on the Theileria annulata schizont surface PRIDE Theileria annulata LTQ Orbitrap Velos Wiens et al. (2014) Dong Xia Jonathan Wastling 2014-12-12
PXD001110 The role of PRDX1 in chemoresistance PRIDE Homo sapiens HCTultra Poschmann et al. (2014) Gereon Poschmann Gereon Poschmann 2014-12-12
PXD000716 Proteome-wide analysis of SUMO2 targets in response to pathological DNA replication stress in human cells PRIDE Homo sapiens Q Exactive Dataset with its publication pending Petra Beli Petra Beli 2014-12-09
PXD001284 The Quantitative Changes in the Yeast Hsp70 and Hsp90 Interactomes upon DNA Damage PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Truman et al. (2014) Donald Wolfgeher Stephen J. Kron 2014-12-08
PXD001278 Off-target responses in the HeLa proteome subsequent to transient plasmid transfection using SILAC PRIDE Homo sapiens LTQ Orbitrap Elite Hagen et al. (2014) Animesh Sharma Geir Slupphaug 2014-12-08
PXD001350 Quantitative proteomics reveals the effect of protein glycosylation in soybean root under flooding stress PRIDE Glycine max (Glycine hispida) LTQ Orbitrap Mustafa & Komatsu (2014) Ghazala Mustafa Setsuko Komatsu 2014-12-08
PXD000402 Thermococcus gammatolerans shotgun analysis PRIDE Thermococcus gammatolerans LTQ Orbitrap Yang et al. (2014) Jean ARMENGAUD Jean Armengaud 2014-12-04
PXD001205 Different Binding Motifs of the Celiac Disease Associated HLA Molecules DQ2.5, DQ2.2 and DQ7.5 Revealed by Relative Quantitative Proteomics of Endogenous Peptide Repertoires PRIDE Homo sapiens Q Exactive Dataset with its publication pending Gustavo de Souza Gustavo de Souza 2014-12-04
PXD000853 Profiling of human lung tissues on 11 normal control, 11 patient and 11 corresponding mouse xenograft tumours PRIDE Homo sapiens LTQ Orbitrap Elite Li et al. (2014) Jiefei Tong Mike F. Moran 2014-12-04
PXD001259 Stadard peptide mixture plus HeLa PRIDE Homo sapiens , Bos taurus LTQ Orbitrap Aoshima et al. (2014) Ken Aoshima Ken Aoshima 2014-12-04
PXD000986 Quantitative proteomics of soybean root during recovery after flooding PRIDE Glycine max (Glycine hispida) LTQ XL Khan et al. (2014) Mudassar Khan Setsuko Komatsu 2014-12-04
PXD000543 Quantitative analysis of murine T-cells PRIDE Mus musculus LTQ Orbitrap; instrument model: LTQ Orbitrap Gruber et al. (2014) Alexander Schmidt 2014-12-02
PXD001075 Identification of biomarkers for PKD1 using urinary exosomes PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending Roman Zenka Daniel McCormick 2014-12-02
PXD000834 Positional proteomics identification of the natural substrates of cytosolic carboxypeptidases PRIDE Homo sapiens LTQ Orbitrap Velos Tanco et al. (2014) Sebastian Tanco Kris Gevaert 2014-12-02
PXD001381 Highly sensitive phosphoproteomics by tailoring solid-phase extraction to electrostatic repulsion-hydrophilic interaction chromatography PRIDE Homo sapiens LTQ Orbitrap Velos Loroch, Zahedi & Sickmann (2014) Stefan Loroch Albert Sickmann 2014-12-02
PXD001270 Identification of immunodominant antigen among Brucella species (B. abortus and B. melitensis) using hyper immune serum from naturally infected hosts PRIDE Brucella melitensis, Brucella abortus, Brucella ultraflex Dataset with its publication pending Jayaseelan Murugaiyan Jayaseelan Murugaiyan 2014-12-01
PXD001152 PBC DIGE PRIDE Homo sapiens 4800 Proteomics Analyzer Dataset with its publication pending Chuiwen Deng Yongzhe Li 2014-11-27
PXD001242 The proteome of normal human retina PRIDE Homo sapiens LTQ Orbitrap Elite Zhang et al. (2014) Pingbo Zhang Richard D. Semba, M.D., M.P.H 2014-11-27
PXD001456 Project Grandiose, cell surface protein capture PRIDE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Carl White Peter W Zandstra 2014-11-27
PXD001397 PBC-DIGE PRIDE Homo sapiens 4800 Proteomics Analyzer Dataset with its publication pending Chuiwen Deng Chuiwen Deng 2014-11-27
PXD000382 MetaProSIP protein-SIP data PRIDE uncultured bacterium LTQ Orbitrap Sachsenberg et al. (2014) Timo Sachsenberg 2014-11-27
PXD001528 Paraquat Exposure and Sod2 Knockdown have Dissimilar Impacts on the Drosophila melanogaster Carbonylated Protein Proteome PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap Velos Narayanasamy et al. (2014) David Simpson Scott Gronert 2014-11-26
PXD001534 IDENTIFICATION OF SUMO-2/3 MODIFIED PROTEINS ASSOCIATED WITH MITOTIC CHROMOSOMES MassIVE Homo sapiens LTQ Orbitrap Velos Cubeñas-Potts et al. (2014) Tharan Srikumar Michael Matunis 2014-11-24
PXD001159 Identification of immunoreactive proteins of Mycobacterium avium subsp. Paratuberculosis PRIDE Other Actinobacteria , Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) ultraflex Piras et al. (2014) Paola Roncada Dr Paola Roncada 2014-11-20
PXD001386 Plant Natriuretic Peptides induce a specific set of proteins diagnostic for an adaptive response to abiotic stress PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Dataset with its publication pending Claudius Marondedze Christoph Gehring 2014-11-20
PXD001091 spike-in comparison PRIDE Streptoccous pyogenes LTQ Orbitrap XL ETD Chawade et al. (2014) Fredrik Levander Fredrik Levander 2014-11-20
PXD001031 Secretome of Solanum tuberosum grown in the presence of proalexin PRIDE Solanum tuberosum LTQ Orbitrap XL ETD Burra et al. (2014) Fredrik Levander Fredrik Levander 2014-11-20
PXD000413 Proteome dynamics of mouse embryonic fibroblast reprograming into iPS cells PRIDE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Marco Benevento 2014-11-20
PXD001283 Mass spectrometry imaging of phospholipids in mouse urinary bladder (imzML dataset) PRIDE Mus musculus LTQ Orbitrap Römpp et al. (2010) Andreas Roempp Bernhard Spengler 2014-11-19
PXD001301 CRISPR-Cas9-based knockout of the prion protein and its effect on the proteome PRIDE Mus musculus Orbitrap Fusion Dataset with its publication pending Gerold Schmitt-Ulms Gerold Schmitt-Ulms 2014-11-19
PXD000715 Phosphoproteome of filamentous fungus Aspergillus nidulans PRIDE Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans) Q Exactive Ramsubramaniam, Harris & Marten (2014) Nikhil Ramsubramaniam Mark Marten 2014-11-18
PXD000837 Proteomic analysis of plasma membrane and tonoplast from the leaves of a mangrove plant Avicennia officinalis PRIDE Avicennia TripleTOF 5600 Krishnamurthy et al. (2014) Qingsong Lin Assistant Professor Lin Qingsong 2014-11-18
PXD001354 Hepatic proteome analysis of Atlantic salmon (Salmo salar) after exposure to environmental concentrations of human pharmaceuticals PRIDE Salmo sp. 4800 Proteomics Analyzer Hampel et al. (2014) Miriam Hampel Jesus Forja 2014-11-18
PXD001125 Maize seedling root cells LC-MS/MS PRIDE Zea mays Q Exactive Yu et al. (2014) Feng Yu Fazhan Qiu 2014-11-18
PXD001414 Tomato nuclear proteome reveals the involvement of specific E2 ubiquitin-conjugating enzymes in fruit ripening PRIDE Solanum lycopersicum TripleTOF 5600 Dataset with its publication pending Guozheng Qin gzqin@ibcas.ac.cn 2014-11-18
PXD000627 Proteomic analysis of Pichia pastoris GS115 PRIDE Komagataella pastoris (strain GS115 / ATCC 20864) (Pichia pastoris) LTQ Orbitrap Velos Renuse et al. (2014) Akhilesh Pandey 2014-11-18
PXD001375 Proteomic analysis of gliosomes from mouse brain for investigation of glial membrane proteins PRIDE Mus musculus TripleTOF 5600 Carney et al. (2014) Pim van Nierop Dr. Mark H.G. Verheijen 2014-11-17
PXD001430 Proteomic analysis of urinary exosomes in cystinuria patients PRIDE Homo sapiens LTQ Orbitrap Velos Bourderioux et al. (2014) Chiara guerrera Ida Chiara Guerrera 2014-11-17
PXD000898 Quantitative Proteomics Reveals the Role of Protein Phosphorylation in Initial Changes of Soybean Root Tip under Flooding Stress PRIDE Glycine max (Glycine hispida) LTQ Orbitrap Yin, Sakata & Komatsu (2014) xiaojian Yin Setsuko Komatsu 2014-11-13
PXD000922 Mycoplasma gallisepticum S6 PRIDE Mycoplasma gallisepticum S6 TripleTOF 5600 Mazin et al. (2014) Ilya Altukhov Govorun Vadim Markovich 2014-11-12
PXD001243 change in hypopharyngeal glands of overwintering bees Proteomics PRIDE Sphingobium chlorophenolicum TripleTOF 5600 Dataset with its publication pending Zhenguo Liu lzhenguo 2014-11-12
PXD001045 Biocathode metaproteomics PRIDE biofilm metagenome QSTAR Wang et al. (2014) Dasha Leary Dasha Leary 2014-11-11
PXD001090 Interactors associated to Sas3-dependent NuA3 histone acetyltransferase complex PRIDE Saccharomyces cerevisiae (Baker's yeast) TripleTOF 5600 Dataset with its publication pending Luz Valero Mercè Pamblanco Rodríguez 2014-11-10
PXD001089 Interactors associated to Sas3-dependent NuA3 histone acetyltransferase complex PRIDE Saccharomyces cerevisiae (Baker's yeast) QSTAR Dataset with its publication pending Luz Valero Mercè Pamblanco Rodríguez 2014-11-10
PXD001203 The Q Exactive HF, a Benchtop Mass Spectrometer with a Pre-filter, High Performance Quadrupole and an Ultra-High Field Orbitrap Analyzer PRIDE Homo sapiens Q Exactive Scheltema et al. (2014) Richard Scheltema Matthias Mann 2014-11-10
PXD001074 BDNF stimulation of protein synthesis in cortical neurons requires the eIF4E kinase Mnk1 PRIDE Mus musculus LTQ Orbitrap Elite Dataset with its publication pending Harvey Johnston Spiro D. Garbis 2014-11-06
PXD001165 Hendra virus infection of bat (Pteropus alecto) and human cells PRIDE Pteropus alecto (Black flying fox), Homo sapiens , Hendra virus (isolate Horse/Autralia/Hendra/1994) LTQ Orbitrap Velos Dataset with its publication pending David Matthews David A Matthews 2014-11-05
PXD001423 Comprehensive Assessment of Proteins Regulated by Dexamethasone Reveals Novel Effects in Primary Human Peripheral Blood Mononuclear Cells - secreted proteins of dexamethasone-treated inflammatory stimulated cells PRIDE Homo sapiens Q Exactive Bileck et al. (2014) Christopher Gerner Christopher Gerner 2014-11-04
PXD001422 Comprehensive Assessment of Proteins Regulated by Dexamethasone Reveals Novel Effects in Primary Human Peripheral Blood Mononuclear Cells - cytoplasmic proteins of dexamethasone-treated inflammatory stimulated cells PRIDE Homo sapiens Q Exactive Bileck et al. (2014) Christopher Gerner Christopher Gerner 2014-11-04
PXD001421 Comprehensive Assessment of Proteins Regulated by Dexamethasone Reveals Novel Effects in Primary Human Peripheral Blood Mononuclear Cells - nuclear proteins of dexamethasone-treated inflammatory stimulated cells PRIDE Homo sapiens Q Exactive Bileck et al. (2014) Christopher Gerner Christopher Gerner 2014-11-04
PXD001420 Comprehensive Assessment of Proteins Regulated by Dexamethasone Reveals Novel Effects in Primary Human Peripheral Blood Mononuclear Cells - secreted proteins of inflammatory stimulated cells PRIDE Homo sapiens Q Exactive Bileck et al. (2014) Christopher Gerner Christopher Gerner 2014-11-04
PXD001419 Comprehensive Assessment of Proteins Regulated by Dexamethasone Reveals Novel Effects in Primary Human Peripheral Blood Mononuclear Cells - cytoplasmic proteins of inflammatory stimulated cells PRIDE Homo sapiens Q Exactive Bileck et al. (2014) Christopher Gerner Christopher Gerner 2014-11-04
PXD001418 Comprehensive Assessment of Proteins Regulated by Dexamethasone Reveals Novel Effects in Primary Human Peripheral Blood Mononuclear Cells - nuclear proteins of inflammatory stimulated cells PRIDE Homo sapiens Q Exactive Bileck et al. (2014) Christopher Gerner Christopher Gerner 2014-11-04
PXD001417 Comprehensive Assessment of Proteins Regulated by Dexamethasone Reveals Novel Effects in Primary Human Peripheral Blood Mononuclear Cells - secreted proteins of untreated cells PRIDE Homo sapiens Q Exactive Bileck et al. (2014) Christopher Gerner Christopher Gerner 2014-11-04
PXD001416 Comprehensive Assessment of Proteins Regulated by Dexamethasone Reveals Novel Effects in Primary Human Peripheral Blood Mononuclear Cells - Cytoplasmic Proteins of Untreated Cells PRIDE Homo sapiens Q Exactive Bileck et al. (2014) Christopher Gerner Christopher Gerner 2014-11-04
PXD001415 Comprehensive Assessment of Proteins Regulated by Dexamethasone Reveals Novel Effects in Primary Human Peripheral Blood Mononuclear Cells - nuclear proteins of untreated cells PRIDE Homo sapiens Q Exactive Bileck et al. (2014) Christopher Gerner Christopher Gerner 2014-11-04
PXD000971 Proteomic Analysis of Livers from Fat-fed Mice Deficient in Either PKCδ or PKCɛ PRIDE Mus musculus LTQ Orbitrap Velos Liao et al. (2014) Bing Qing Liao Carsten Schmitz-Peiffer 2014-11-04
PXD001267 Male infertility G. fossarum PRIDE Gammarus fossarum LTQ Orbitrap Elite Dataset with its publication pending Jean ARMENGAUD Jean Armengaud 2014-11-04
PXD001257 Shotgun ecotoxicoproteomics of Daphnia pulex: biochemical effects of the anticancer drug tamoxifen PRIDE Daphnia pulex (Water flea) LTQ Orbitrap Borgatta et al. (2014) Patrice Waridel Manfredo Quadroni 2014-10-31
PXD001305 Rapid and Deep Proteomes by Faster Sequencing on a Benchtop Quadrupole Ultra-High-Field Orbitrap Mass Spectrometer PRIDE Homo sapiens Q Exactive HF; Q Exactive Kelstrup et al. (2014) Christian Kelstrup Jesper V. Olsen 2014-10-31
PXD000964 MS approach assessment and Mad1 phosphopeptide analysis PRIDE Homo sapiens LTQ Orbitrap Velos Bauer et al. (2014) Alexander Schmidt Alexander Schmidt 2014-10-31
PXD001387 Proteomics of Skin Proteins in Psoriasis PRIDE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Kathleen Lundberg Mark R. Chance 2014-10-30
PXD001217 Snake venom serine proteinases specificity mapping by proteomic identification of cleavage sites PRIDE Bothrops jararaca (Bothrops jajaraca) LTQ Orbitrap Dataset with its publication pending Andre Zelanis Solange M. T. Serrano 2014-10-30
PXD001108 Listeria monocytogenes phosphoproteomics PRIDE Listeria monocytogenes EGD-e LTQ Orbitrap Dataset with its publication pending Sandeep Misra Celine Henry 2014-10-29
PXD001260 Identification of miR-145 targets using SILAC PRIDE Homo sapiens LTQ Orbitrap Velos Huang et al. (2014) Akhilesh Pandey Akhilesh Pandey 2014-10-28
PXD000473 Alpha-1-Antitrypsin: A Novel Human High Temperature Requirement Protease A1 (HTRA1) Substrate in Human Placental Tissue PRIDE Homo sapiens LTQ FT Frochaux et al. (2014) Violette Frochaux 2014-10-24
PXD000906 Deciphering changes to human platelet proteome and degradome during storage before transfusion PRIDE Homo sapiens QSTAR Prudova et al. (2014) Anna Prudova Christopher Mark Overall 2014-10-24
PXD001062 Substrate Trapping Proteomics Reveals Targets of the βTrCP2/FBXW11 Ubiquitin Ligase PRIDE Homo sapiens LTQ Orbitrap Velos; LTQ Orbitrap Elite Kim et al. (2014) Dennis Goldfarb Michael Ben Major 2014-10-24
PXD001162 Analysis low level Hsp90 proteome by SILAC in yeast PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Elite Gopinath et al. (2014) Scott Schuyler Scott C. Schuyler 2014-10-24
PXD001403 Proteome profiling of ovarian cancer and cirrhosis ascites PRIDE Homo sapiens TripleTOF 5600 Shender et al. (2014) Georgij Arapidi Georgij Arapidi 2014-10-23
PXD001402 Proteome profiling of microvesicles, exosomes and supernatant from SKOV3 PRIDE Homo sapiens TripleTOF 5600 Shender et al. (2014) Georgij Arapidi Georgij Arapidi 2014-10-23
PXD001404 Off-line high pH reversed-phase fractionation for in-depth phosphoproteomics PRIDE Mus musculus Q Exactive Batth, Francavilla & Olsen (2014) Tanveer Batth Jesper V. Olsen 2014-10-23
PXD000499 miRNA-mediated regulation of hBC cell proteome PRIDE Homo sapiens QSTAR Nassa et al. (2014) Tuula Nyman 2014-10-23
PXD000788 Human EGFR AP-MS project PRIDE Homo sapiens Q Exactive Tong, Taylor & Moran (2014) Jiefei Tong Mike Moran 2014-10-23
PXD001342 Soluble lymph node proteome during anthrax infection in mice PRIDE Mus musculus LTQ Orbitrap Popova et al. (2014) Serguei Popov Serguei Popov 2014-10-21
PXD001252 Arabidopsis thaliana proteomics/phosphoproteomics PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Dataset with its publication pending Ines Lassowskat Justin Lee 2014-10-20
PXD001200 Hela-S3 ATPome PRIDE Homo sapiens Q Exactive Adachi et al. (2014) Jun Adachi Jun Adachi 2014-10-20
PXD001390 Re-analysis of: ‘CSF proteome mapping: Human cerebrospinal fluid LC-MS/MS, Part 2’ (PXD000652) to demonstrate the ProteoAnnotator software for mapping identifications to Ensembl genomes PRIDE Homo sapiens LTQ Orbitrap Ghali et al. (2014) Fawaz Ghali Andy Jones 2014-10-20
PXD001042 Proteogenomic analysis of Toxoplasma gondii (comparing genome releases 6 and 10) to demonstrate the performance of the ProteoAnnotator software PRIDE Toxoplasma gondii ME49 LTQ Orbitrap Ghali et al. (2014) Fawaz Ghali Andrew R. Jones 2014-10-20
PXD000867 Cell type-resolved quantitative proteomics of mouse liver PRIDE Mus musculus Q Exactive Dataset with its publication pending Mario Oroshi Matthias Mann 2014-10-20
PXD001398 Accessibilome of Human Glioblastoma PRIDE Homo sapiens , Mus musculus Bruker Daltonics esquire series Dataset with its publication pending Andrei Turtoi Vincent Castronovo 2014-10-17
PXD001373 Major Proteomic Changes Associated with Amyloid Induced Biofilm Formation in Pseudomonas aeruginosa PAO1 PRIDE Pseudomonas aeruginosa PAO1 Q Exactive Herbst et al. (2014) Florian-Alexander Herbst Per Halkjær Nielsen 2014-10-17
PXD000078 'Life and death' of extracytoplasmic proteins PRIDE Bacillus subtilis (strain 168) LTQ Orbitrap Krishnappa et al. (2013) Andreas Otto 2014-10-15
PXD001281 Proteome-wide identification of SUMO2 modification sites PRIDE Homo sapiens Q Exactive Tammsalu et al. (2014) Triin Tammsalu Ronald T. Hay 2014-10-15
PXD001094 Phosphoproteomics study of N-terminal tyrosine sites of SLP-76 PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending QINQIN JI Arthur Salomon 2014-10-15
PXD001033 in-depth phosphoproteomic profiling of mouse microglia BV-2 cell line PRIDE Mus musculus Q Exactive Han et al. (2014) Dohyun Han Dohyun Han 2014-10-15
PXD000452 Proteomic analysis in Giardia duodenalis yields insights into strain virulence and antigenic variation PRIDE Giardia intestinalis assemblage A LTQ Dataset with its publication pending Samantha Emery 2014-10-14
PXD000576 Proteogenomics of Gammarus fossarum PRIDE Gammarus fossarum LTQ Orbitrap Trapp et al. (2014) Jean ARMENGAUD 2014-10-13
PXD001084 Label-free LC-MSe in tissue and serum reveals protein networks underlying differences between benign and malignant serous ovarian tumors PRIDE Homo sapiens Synapt G2 MS Wegdam et al. (2014) Gertjan Kramer Johannes M.F.G. Aerts 2014-10-13
PXD000877 In-depth proteomic analysis of carp (Cyprinus carpio L) spermatozoa PRIDE Cyprinus carpio (Common carp) LTQ Dietrich et al. (2014) Mariola Dietrich Mariola A. Dietrich 2014-10-13
PXD000961 Integrated metagenomic and metaproteomic analyses of marine biofilm communities PRIDE biofilm metagenome QSTAR Dataset with its publication pending Dasha Leary Dasha Leary 2014-10-13
PXD000767 Phosphoproteome of mouse testis PRIDE Mus musculus LTQ Orbitrap Qi et al. (2014) zhou tao Jiahao Sha 2014-10-10
PXD001339 Huh-7 exosomes and HBV PRIDE Homo sapiens Q Exactive Zhao et al. (2014) Jing Liu Youhua Xie 2014-10-09
PXD001382 ancient_maize_MS MassIVE Zea mays subsp. mays LTQ Dataset with its publication pending Sunghee Woo Lisandra Zepeda 2014-10-06
PXD001034 Biomarkers for Cervical Cancer. iTRAQ Discovery. PRIDE Homo sapiens Agilent instrument model Boichenko et al. (2014) Alexander Boichenko Rainer Bischoff 2014-10-06
PXD001055 Biomarkers for cervical cancer. Verfification. PRIDE Homo sapiens Agilent instrument model Boichenko et al. (2014) Alexander Boichenko Rainer Bischoff 2014-10-06
PXD001380 Specific Non-Gluten Proteins of Wheat are Novel Target Antigens in Celiac Disease Humoral Response MassIVE Triticum aestivum, Specific Non-Gluten Proteins of Wheat are Novel Target Antigens in Celiac Disease Humoral Response LTQ Orbitrap Elite Dataset with its publication pending William Vensel Armin Alaedini, Columbia University Medical Center; 1130 Saint Nicholas Ave., 9th Floor; New York, NY 10032; Phone: 212-851-4582; Email: aa819@columbia.edu. 2014-10-05
PXD000554 Convergence of Ubiquitylation and Phosphorylation Signaling in Rapamycin-Treated Yeast Cells PRIDE Saccharomyces cerevisiae (Baker's yeast) Q Exactive Iesmantavicius, Weinert & Choudhary (2014) Brian Weinert Chunaram Choudhary 2014-10-03
PXD001076 Quantitative phosphoproteomics of cytotoxic T cells to reveal Protein Kinase D 2 regulated networks PRIDE Mus musculus LTQ Orbitrap Velos Navarro et al. (2014) Jens Hukelmann Doreen Ann Cantrell 2014-10-03
PXD001216 Analysis of differential expression patterns of mRNA and protein during cold- and de-acclimation in Arabidopsis PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap XL Dataset with its publication pending Kentaro Nakaminami Motoaki Seki 2014-10-02
PXD000705 Extending proteome coverage through an on-line 2D SCX-RP ultra-high pressure system PRIDE Homo sapiens Q Exactive Dataset with its publication pending Fabio Marino Albert J.R. Heck 2014-09-30
PXD001226 Protein deacetylation affects acetate metabolism, motility and acid stress response in Escherichia coli PRIDE Escherichia coli Q Exactive; LTQ Orbitrap Velos; LTQ Orbitrap Elite Dataset with its publication pending Harm Post Manuel Cánovas 2014-09-30
PXD000786 BMP1/Tolloid-like substrates by iTRAQ degradomics PRIDE Homo sapiens QSTAR Delolme et al. (2014) Frederic DELOLME Frederic Delolme 2014-09-29
PXD001266 A transcriptional regulator Sll0794 regulates tolerance to biofuel ethanol in photosynthetic Synechocystis sp. PCC 6803 PRIDE Synechocystis sp. PCC 6803 TripleTOF 5600 Song et al. (2014) Guangsheng Pei Weiwen Zhang 2014-09-26
PXD000763 Identification of inositol 1,4,5-trisphosphate-binding proteins by heparin-agarose affinity purification and LTQ ORBITRAP MS in Oryza sativa PRIDE Rice(O. sativa) LTQ Orbitrap Nie et al. (2014) Shengcheng Han Shengcheng Han 2014-09-25
PXD000886 Bacillus cereus proteomics PRIDE Bacillus cereus (strain ATCC 14579 / DSM 31) LTQ Orbitrap Laouami et al. (2014) Jean ARMENGAUD Jean ARMENGAUD 2014-09-25
PXD001175 Proteomic dissection of nanoparticle-containing vesicles reveals a major role for a macropinocytic-like uptake mechanism and multivesicular bodies during intracellular nanoparticle trafficking PRIDE Homo sapiens Synapt G2-S HDMS Hofmann et al. (2014) Stefan Tenzer Stefan Tenzer 2014-09-25
PXD000590 In-depth protein profiling of mouse hippocampal postsynaptic density using data-independent acquisition proteomics PRIDE Mus musculus Synapt MS Distler et al. (2014) Ute Distler Ute Distler 2014-09-25
PXD001129 Dissection of IL-2 and IL-15 signaling pathways PRIDE Homo sapiens Q Exactive Osinalde et al. (2014) Nerea Osinalde Nerea Osinalde 2014-09-23
PXD001328 Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts PRIDE Homo sapiens LTQ Orbitrap Velos Groessl et al. (2014) Christopher Gerner Christopher Gerner 2014-09-23
PXD001327 Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts PRIDE Homo sapiens Q Exactive Groessl et al. (2014) Christopher Gerner Christopher Gerner 2014-09-23
PXD001326 Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts PRIDE Homo sapiens Q Exactive Groessl et al. (2014) Christopher Gerner Christopher Gerner 2014-09-23
PXD001325 Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts PRIDE Homo sapiens Q Exactive Groessl et al. (2014) Christopher Gerner Christopher Gerner 2014-09-23
PXD001324 Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts PRIDE Homo sapiens Q Exactive Groessl et al. (2014) Christopher Gerner Christopher Gerner 2014-09-23
PXD001323 Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts PRIDE Homo sapiens LTQ Orbitrap Velos Groessl et al. (2014) Christopher Gerner Christopher Gerner 2014-09-23
PXD001311 Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts PRIDE Homo sapiens LTQ Orbitrap Velos Groessl et al. (2014) Christopher Gerner Christopher Gerner 2014-09-23
PXD001022 Proteomic analyses of embryogenic tissues in Picea balfouriana treated by 6-BAP PRIDE Picea likiangensis var. rubescens TripleTOF 5600 Li, Zhang & Wang (2014) Qingfen Li Junhui Wang 2014-09-23
PXD001063 Proteomic analysis of cAMP-mediated signaling during differentiation of 3T3-L1 preadipocytes PRIDE Mus musculus 4800 Proteomics Analyzer Borkowski et al. (2014) Kamil Borkowski Karsten Kristiansen 2014-09-22
PXD000892 Reproducible Automated Phosphopeptide Enrichment using Magnetic TiO2 and Ti-IMAC PRIDE Mus musculus LTQ Orbitrap Velos; Q Exactive Tape et al. (2014) Christopher Tape Claus Jørgensen 2014-09-22
PXD001253 iTRAQ proteomics of non fibrotic carcinoma on Human Liver PRIDE Homo sapiens LTQ Orbitrap Negroni et al. (2014) Luc NEGRONI Eric Chevet 2014-09-18
PXD000279 MaxLFQ label-free quantification algorithm benchmark datasets PRIDE Escherichia coli, Homo sapiens LTQ Orbitrap; Q Exactive Cox et al. (2014) Mario Oroshi 2014-09-17
PXD000661 A ‘proteomic ruler’ for protein copy number and concentration estimation without spike-in standards PRIDE Homo sapiens , Mus musculus LTQ Orbitrap; LTQ Orbitrap Velos; Q Exactive Wiśniewski et al. (2014) Mario Oroshi 2014-09-16
PXD000605 The human plasma proteome before and after remote ischemic preconditioning PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Dataset with its publication pending Marc Vaudel 2014-09-16
PXD000333 Human Primary T-cells Phospoproteomic WorkFlow PRIDE Homo sapiens LTQ Orbitrap Gallardo et al. (2014) Óscar Gallardo Román 2014-09-16
PXD001006 CPTAC System Suitability (CompRef) Study: Proteome, VU PRIDE Homo sapiens , Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Nathan Edwards Daniel C. Liebler, Ph.D. 2014-09-16
PXD001000 CPTAC System Suitability (CompRef) Study: Phosphoproteome, PNNL PRIDE Homo sapiens , Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Nathan Edwards Richard D. Smith, Ph.D. 2014-09-16
PXD000966 CPTAC System Suitability (CompRef) Study: Proteome, PNNL PRIDE Homo sapiens , Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Nathan Edwards Richard D. Smith, Ph.D. 2014-09-16
PXD001310 Polysome pellet digests PRIDE Homo sapiens Agilent instrument model Dataset with its publication pending Eric Fang Isabel Zaror 2014-09-16
PXD001127 C-terminal Domain Small Phosphatase 1 and MAP kinase reciprocally control REST stability and neuronal differentiation. PRIDE Rattus norvegicus LTQ Nesti et al. (2014) Phillip Wilmarth Gail Mandel 2014-09-15
PXD001318 GNPS Bacteria CB0028 associated to Acromyrmex sp. MassIVE Bacteria CB0028 instrument model: Thermo Finnigan LTQ-FT-ICR Dataset with its publication pending Cristopher Boya Marcelino Gutierrez / Pieter Dorrestein 2014-09-12
PXD001317 GNPS Interaction between bacteria CB0028 and Escovopsis sp. (CBacro424) MassIVE Bacteria CB0028 and Escovopsis sp. instrument model: Thermo Finnigan LTQ-FT-ICR Dataset with its publication pending Cristopher Boya Marcelino Gutierrez / Pieter Dorrestein / Hermogenes Fernandez-Marin 2014-09-12
PXD001316 GNPS Bacteria CB0028 associated to Acromyrmex sp. MassIVE Bacteria CB0028 associated to Acromyrmex sp. instrument model: Thermo Finnigan LTQ-FT-ICR Dataset with its publication pending Cristopher Boya Marcelino Gutierrez / Pieter Dorrestein 2014-09-12
PXD001315 GNPS Escovopsis sp. (CBacro424) associated to nest of Acromyrmex sp. MassIVE Escovopsis sp. instrument model: Thermo Finnigan LTQ-FT-ICR Dataset with its publication pending Cristopher Boya Marcelino Gutierrez / Pieter Dorrestein 2014-09-12
PXD001314 GNPS Streptomyces (CBR38) associated to Acromyrmex sp. MassIVE Streptomyces instrument model: Thermo Finnigan LTQ-FT-ICR Dataset with its publication pending Cristopher Boya Marcelino Gutierrez / Pieter Dorrestein 2014-09-12
PXD001313 GNPS Streptomyces sp.(CBR53) associated to Acromyrmex sp. Direct infusion MassIVE Streptomyces sp. micrOTOF-Q III Dataset with its publication pending Cristopher Boya Gutierrez/Dorrestein 2014-09-12
PXD001312 GNPS Octocoral-Associated Bacteria from Panama II MassIVE Bacteria associated to octocorals collected in Panama LTQ FT; LTQ Orbitrap Dataset with its publication pending Daniel Torres-Menoza Pieter C. Dorrestein / Marcelino Gutierrez 2014-09-12
PXD000872 Forty-four novel protein-coding loci discovered using a PIT approach in rat male germ cells PRIDE Rattus norvegicus LTQ Orbitrap XL Chocu et al. (2014) Sophie Chocu Sophie Chocu 2014-09-12
PXD001248 Determination of Supplier-To-Supplier and Lot-To-Lot Variability in Glycation of Recombinant Human Serum Albumin Expressed in Oryza sativa PRIDE Homo sapiens Synapt MS Dataset with its publication pending Marybeth Creskey Michael J.W. Johnston 2014-09-12
PXD001309 GNPS Octocoral-Associated Bacteria from Panama MassIVE Bacteria associated to Octocorals collected in Panama LTQ FT; LTQ Orbitrap Dataset with its publication pending Daniel Torres-Menoza Pieter C. Dorrestein / Marcelino Gutierrez 2014-09-11
PXD001308 Raj_nSR100_interactions_P36_V21_P105_V17 MassIVE Homo sapiens, Mus musculus LTQ; TripleTOF 5600 0 Gingras Lab Anne-Claude Gingras 2014-09-11
PXD001080 Entamoeba histolytica splicing/mRNP proteome PRIDE Entamoeba histolytica LTQ Orbitrap Valdés et al. (2014) Robert Winkler Dr. Jesus Valdes Flores 2014-09-11
PXD001304 Trichoderma RUT C-30 secretome after growth on different cellulosic substrates PRIDE Trichoderma reesei RUT C-30 Q Exactive Peciulyte et al. (2014) George Anasontzis Lisbeth Olsson 2014-09-11
PXD001135 Relative protein quantification in mouse hippocampal synaptosomes during aging series PRIDE Mus musculus TOF/TOF 5800 Vegh et al. (2014) Pim van Nierop Dr. Ronald van Kesteren 2014-09-10
PXD001292 Comprehensive phosphoproteome analysis unravels the core signaling network that initiates the earliest synapse pathology in preclinical Alzheimer's disease brain PRIDE Mus musculus TripleTOF 5600 Tagawa et al. (2014) Hidenori Homma Hitoshi Okazawa 2014-09-10
PXD001182 Metabolic changes in adaptation to biofilm growth by streptococcus pneumoniae PRIDE Streptococcus pneumoniae SP14-BS69 Q-Tof ultima Allan et al. (2014) Paul Skipp Dr Paul Skipp 2014-09-10
PXD000778 Mouse SCN in LC-MSMS PRIDE Mus musculus LTQ Orbitrap Dataset with its publication pending kerwin chiang Daniel Figeys 2014-09-10
PXD000666 Deep proteomic evaluation of primary and cell line motoneuron disease models delineates major differences in neuronal characteristics PRIDE Mus musculus Q Exactive Hornburg et al. (2014) Mario Oroshi Matthias Mann 2014-09-09
PXD001199 Systematic identification of hypothetical bacteriophage proteins targeting key protein complexes of Pseudomonas aeruginosa PRIDE Pseudomonas aeruginosa PAO1 LTQ; LTQ Orbitrap Velos Van den Bossche et al. (2014) Jean-Paul Noben Prof Rob Lavigne 2014-09-09
PXD000935 A normative study of the synovial fluid proteome from healthy porcine knee joints PRIDE Sus scrofa domesticus (domestic pig), Homo sapiens Q Exactive; TripleTOF 5600 Bennike et al. (2014) Tue Bennike Hanno Steen 2014-09-09
PXD001295 GNPS - Streptomyces cattleya media screening MassIVE Streptomyces cattleya NRRL 8057 = DSM 46488 6520 Quadrupole Time-of-Flight LC/MS Dataset with its publication pending Ellis O'Neill Bradley Moore 2014-09-08
PXD001294 GNPS - Streptomyces CNB091, CNS615 and CNT302 on 8 media MassIVE Streptomyces sp. CNB091, Streptomyces sp. CNS615, Streptomyces sp. CNT302 6520 Quadrupole Time-of-Flight LC/MS Dataset with its publication pending Ellis O'Neill Bradley Moore 2014-09-08
PXD001288 GNPS - Streptomyces on A1, MS and R5 agar MassIVE Streptomyces sp. CNB091, Streptomyces sp. CNT302, Streptomyces sp. TAA204, Streptomyces sp. CNY228, Streptomyces sp. CNY243, Streptomyces sp. CNT372, Streptomyces sp. TAA486, Streptomyces sp. TAA040, Streptomyces sp. CNS335, Streptomyces sp. CNT318, Strep 6520 Quadrupole Time-of-Flight LC/MS Dataset with its publication pending Ellis O'Neill Bradley Moore 2014-09-04
PXD001287 Gonzalez et al. MCP 2014 (PSM peptides); Cell Chemisty & Biology 2014 (N-AgrD Peptides) MassIVE Staphylococcus aureus strain TCH1516 USA300 LTQ Dataset with its publication pending Max Cruesemann David Gonzalez, Ph.D 2014-09-04
PXD001054 Redox Proteome of Skeletal Muscle PRIDE Mus musculus Q Exactive McDonagh et al. (2014) Brian McDonagh Brian McDonagh 2014-09-04
PXD001061 Uncovering Global SUMOylation Signaling Networks in a Site-Specific Manner PRIDE Homo sapiens Q Exactive Hendriks et al. (2014) Ivo Hendriks Alfred C.O. Vertegaal 2014-09-04
PXD000294 Novel insights into the metabolic and biochemical underpinnings assisting dry-season survival in female malaria mosquitoes of the Anopheles gambiae complex PRIDE Anopheles gambiae str. PEST AB SCIEX TOF/TOF T2D file Hidalgo et al. (2014) Hidalgo Kevin 2014-09-03
PXD001277 Mouse, Hippocampus, LC-MSMS PRIDE Mus musculus LTQ Orbitrap English et al. (2013) Caitriona Scaife David R. Cotter 2014-09-02
PXD000888 Anoxia in Ralstonia eutropha H16 PRIDE Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (Ralstonia eutropha) LTQ Orbitrap Kohlmann et al. (2014) Andreas Otto Andreas Otto 2014-09-01
PXD001251 Identification of long-lived proteins retained in cells undergoing repeated asymmetric divisions PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Thayer et al. (2014) Nathaniel Thayer Daniel E. Gottschling 2014-09-01
PXD001003 Comparative analysis of the adaptation of Staphylococcus aureus to internalization by different types of human non-professional phagocytic host cells PRIDE Staphylococcus aureus Q Exactive Surmann et al. (2014) Maren Depke Frank Schmidt 2014-09-01
PXD001174 Un-conditioned commercial embryo culture media contain a large variety of non-declared proteins: a comprehensive proteomics analysis PRIDE Homo sapiens TripleTOF 5600 Dyrlund et al. (2014) Thomas F. Dyrlund Jan J. Enghild 2014-09-01
PXD001118 Histione HCD and CID datasets for evaluation of search engines PRIDE Homo sapiens LTQ Orbitrap Velos Yuan et al. (2014) Zuo-Fei Yuan Benjamin A. Garcia 2014-09-01
PXD000268 AKT isoform specific signaling PRIDE Mus musculus LTQ Orbitrap Reinartz et al. (2014) Michael Reinartz 2014-08-28
PXD001258 Correction To - Confetti: A Multi-protease Map of the HeLa Proteome for Comprehensive Proteomics PRIDE Homo sapiens Q Exactive; LTQ Orbitrap Elite Guo et al. (2014) David Trudgian Hamid Mirzaei 2014-08-28
PXD000874 Cardiac myofilament isoforms PRIDE Rattus norvegicus LTQ Orbitrap Kooij et al. (2014) Vidya Venkatraman Dr. Jennifer E Van Eyk 2014-08-28
PXD001268 Preterm birth CVF proteomics discovery PRIDE Homo sapiens LTQ Orbitrap Parry et al. (2014) Suhong Zhang Ian A Blair 2014-08-28
PXD000804 Exploring potential virulence regulators in Paracoccidioides brasiliensis isolates of varying virulence through quantitative proteomics PRIDE Paracoccidioides brasiliensis (strain Pb18) LTQ Orbitrap Velos Castilho et al. (2014) Alexandre Keiji Tashima Alexandre Keiji Tashima 2014-08-28
PXD000552 Deep and precise quantification of the mouse synaptosomal proteome reveals substantial remodeling during postnatal maturation PRIDE Mus musculus LTQ Orbitrap Velos Moczulska et al. (2014) Michael Schutzbier 2014-08-28
PXD001018 Divergent Cysteines in FOXO3 and FOXO4 Mediate Paralog-Specific Redox Signaling PRIDE Homo sapiens LTQ Orbitrap Velos Putker et al. (2014) Harmjan Vos Tobias Dansen 2014-08-26
PXD001040 Divergent Cysteines in FOXO3 and FOXO4 Mediate Paralog-Specific Redox Signaling PRIDE Homo sapiens LTQ Orbitrap Velos Putker et al. (2014) Harmjan Vos Tobias Dansen 2014-08-26
PXD000765 Label-free mass spectrometry-based profiling of urinary proteins and metabolites for non-invasive diagnosis of idiopathic nephrotic syndrome in children PRIDE Homo sapiens Synapt MS Sedic et al. (2014) Hans Vissers Sandra Kraljevic Pavelic 2014-08-26
PXD001041 Divergent Cysteines in FOXO3 and FOXO4 Mediate Paralog-Specific Redox Signaling PRIDE Homo sapiens LTQ Orbitrap Velos Putker et al. (2014) Harmjan Vos Tobias Dansen 2014-08-26
PXD001254 Qualitative and quantitative analysis of chicken semen PRIDE Gallus gallus LTQ Orbitrap Labas et al. (2014) Labas Valerie Valérie Labas 2014-08-22
PXD000693 LC-MS/MS to identify proteins present in apoplastic fluid extracted from WT and ca1ca4 mutant Arabidopsis plants grown under low and high CO2 conditions PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Engineer et al. (2014) Jeff Anderson Scott C Peck 2014-08-22
PXD000692 LC-MS/MS of apoplast proteins from Arabidopsis wild type and ca1ca4 mutant plants PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Engineer et al. (2014) Jeff Anderson Scott C Peck 2014-08-22
PXD000956 Carbonic anhydrases, EPF2 peptide and a novel protease, CRSP, mediate CO2 control of stomatal development PRIDE Arabidopsis thaliana (Mouse-ear cress) TripleTOF 5600 Engineer et al. (2014) Majid Ghassemian Majid Ghassemian 2014-08-22
PXD000572 Hematopoietic Stem Cell (HSC) and Multipotent Progenitor (MPP1) quantitative proteomics PRIDE Mus musculus LTQ Orbitrap Velos Cabezas-Wallscheid et al. (2014) Jenny Hansson 2014-08-21
PXD000467 Endogenous S-nitrosoproteome in colorectal cancer patients PRIDE Homo sapiens Q-Tof Premier Chen et al. (2014) Yi-Ju Chen 2014-08-20
PXD000380 KMH2 control treatment PRIDE Homo sapiens Q Exactive Carvalho et al. (2014) Rune Matthiesen 2014-08-20
PXD001235 Systematic evaluation of quantotypic peptides for targeted analysis of the human kinome (Worboys, et al.) PeptideAtlas Homo sapiens TSQ Vantage Worboys et al. (2014) Jonathan Worboys Claus Jorgensen 2014-08-19
PXD001234 Biomarkers for cervical cancer. Validation. (Alexander, et al. submitted) PeptideAtlas Homo sapiens 6410 Triple Quadrupole LC/MS no publication Alexander Boichenko Rainer Bischoff 2014-08-19
PXD001233 SRM analysis of breast tumor samples (Waldemarson, et al) PeptideAtlas Homo sapiens TSQ Vantage Waldemarson, et al. (submitted) Sofia Waldemarson Peter James 2014-08-19
PXD001232 Automated Phosphopeptide Enrichment SRM Analysis (Tape, et al.) PeptideAtlas Homo sapiens TSQ Vantage no publication Christopher Tape Claus Jorgensen 2014-08-19
PXD001231 Clinical validation of potential urinary biomarkers of UPJ obstruction in newborns (Lacroix et al.) PeptideAtlas Homo sapiens QTRAP 5500 Lacroix, et al. (submitted) Anne Gonzalez de Peredo B. Monsarrat 2014-08-18
PXD001230 Effects of EGFR, EGFRvIII, PTEN on invasion-promoting proteins secreted by glioblastoma cells (Sangar et al. 2014) PeptideAtlas Homo sapiens 6490 Triple Quadrupole LC/MS Sangar et al. (2014) Vineet Sangar Dr Nathan D Price 2014-08-18
PXD001229 Cell-Specific Labeling Enzymes For Analysis of Cell-Cell Communication in Continuous Co-Culture (Tape et al. 2014) PeptideAtlas Mycobacterium tuberculosis TSQ Vantage Tape et al. (2014) Christopher Tape Claus Jorgensen 2014-08-18
PXD001228 DNA-repair enzymes measure before and after gamma-irradiation of breast cancer-derived cell lines (James, et al.) PeptideAtlas Homo sapiens TSQ Vantage no publication Paolo Cifani Peter James 2014-08-18
PXD000992 Chicken uterine fluid protein description and quantification PRIDE Gallus gallus LTQ Orbitrap Velos Dataset with its publication pending G HARICHAUX Joel Gautron 2014-08-18
PXD000822 Ram seminal plasma PRIDE Ovis aries LTQ Orbitrap Velos Soleilhavoup et al. (2014) G HARICHAUX Xavier Druart 2014-08-18
PXD001163 Proteomic analysis of the Plasmodium male gamete reveals a key role for glycolysis in flagellar motility PRIDE Plasmodium sp. pBT9 LTQ Orbitrap Talman et al. (2014) Ceereena Ubaida Mohien Arthur M. Talman 2014-08-18
PXD000965 N-glycosylation site occupancy in human prostaglandin H synthases expressed in Pichia pastoris PRIDE Homo sapiens , Komagataella pastoris (Pichia pastoris) LTQ Orbitrap; Q Exactive Kukk, Kasvandik & Samel (2014) Sergo Kasvandik Nigulas Samel 2014-08-18
PXD001227 HPP Chr18: depleted plasma and HepG2 cells, SRM BIO (Ponomarenko et al. 2014) PeptideAtlas Homo sapiens 6490 Triple Quadrupole LC/MS Ponomarenko et al. (2014) Aleksey Filimonov Alexander Archakov 2014-08-15
PXD000649 HPP Chr18: depleted plasma and HepG2 cells, SRM QC (Ponomarenko et al. 2014) PeptideAtlas Homo sapiens 6490 Triple Quadrupole LC/MS Ponomarenko et al. (2014) Aleksey Filimonov Alexander Archakov 2014-08-15
PXD000167 HPP Chr18: depleted plasma and HepG2 cells, SRM scouting (Ponomarenko et al. 2014) PeptideAtlas Homo sapiens 6490 Triple Quadrupole LC/MS Ponomarenko et al. (2014) Aleksey Filimonov Alexander Archakov 2014-08-15
PXD000103 Label-sparse (Chang et al. 2014) PeptideAtlas Mus musculus 4000 QTRAP Chang et al. (2014) Eduard Sabido Olga Vitek 2014-08-15
PXD000311 Analysis of mouse hippocampus membrane proteome by gel-based LC/MS PRIDE Mus musculus instrument model: Thermo Orbitrap Velos Pro Heo et al. (2014) Gert Lubec 2014-08-15
PXD000862 Metaproteomics: Optimization and evaluation of protein extraction from activated sludge PRIDE environmental samples Q Exactive Hansen et al. (2014) Florian-Alexander Herbst Per Halkjær Nielsen 2014-08-15
PXD001220 Characterization of native protein complexes and protein isoform variation using size-fractionation-based quantitative proteomics. PRIDE Homo sapiens LTQ Orbitrap Velos Kirkwood et al. (2013) Vackar Afzal Prof Angus Lamond 2014-08-14
PXD000999 DeMix:efficient identification of co-fragmented peptides PRIDE Homo sapiens Q Exactive Zhang et al. (2014) Bo Zhang Roman A. Zubarev 2014-08-14
PXD001167 Quantitative Histone Acetylation PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Cieniewicz et al. (2014) Alan Tackett Alan J Tackett 2014-08-14
PXD001019 Quantitative Proteomic Analysis Reveals Posttranslational Responses to Aneuploidy in Yeast PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap; LTQ Orbitrap Velos Dephoure et al. (2014) Noah Dephoure Noah Dephoure 2014-08-14
PXD001156 YLR455 affinity purification PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Gilbert et al. (2014) Alan Tackett Alan J. Tackett 2014-08-14
PXD000770 Cellular and proteomics analysis of the endomembrane system from the unicellular Entamoeba histolytica PRIDE Entamoeba histolytica HM-1:IMSS LTQ Orbitrap Velos Perdomo et al. (2014) gagan jhingan Nancy Guillen 2014-08-13
PXD000893 secretome study for human hepatic model during entamoeba invasion PRIDE Homo sapiens , Entamoeba histolytica HM-1:IMSS-A, Bos taurus LTQ Orbitrap Velos Dataset with its publication pending gagan jhingan Nancy Guillen 2014-08-13
PXD001058 Unravelling the proteomic profile of rice meiocytes during early meiosis PRIDE Rice(O. sativa) LTQ Orbitrap Velos Collado-Romero, Alós & Prieto (2014) Enriqueta Alos Pilar Prieto 2014-08-13
PXD000750 Metastatic pancreatic cancer signaling PRIDE Homo sapiens LTQ Orbitrap XL; LTQ Orbitrap Elite Kim et al. (2014) Akhilesh Pandey Min-Sik Kim 2014-08-13
PXD000759 Phosphopeptide enrichment on synthetic libraries and HeLa cells digest PRIDE Homo sapiens LTQ Orbitrap Elite Matheron et al. (2014) Lucrece Matheron Albert Heck 2014-08-11
PXD001009 Deletion of Jagunal homolog 1 (Jagn1) impairs neutrophil mediated responses against Candida albicans PRIDE Mus musculus Q Exactive Dataset with its publication pending Gerhard Duernberger Josef Penninger 2014-08-11
PXD001008 Deletion of Jagunal homolog 1 (Jagn1) impairs neutrophil mediated responses against Candida albicans PRIDE Mus musculus Q Exactive Dataset with its publication pending Gerhard Duernberger Josef Penninger 2014-08-11
PXD000773 SILAC-based Quantitative Proteomic Analysis of Secretome between Activated and Reverted Hepatic Stellate Cells PRIDE Homo sapiens LTQ FT Zhang et al. (2014) Hongyu Zhang Ying Jiang 2014-08-11
PXD000640 Analysis of the interactome of RPS19 mutants PRIDE Homo sapiens 6340 Ion Trap LC/MS Caterino et al. (2014) Marianna Caterino Margherita Ruoppolo 2014-08-11
PXD001026 Systematic evaluation of quantotypic peptides for targeted analysis of the human kinome PRIDE Homo sapiens LTQ Orbitrap Velos; TSQ Vantage Worboys et al. (2014) Jonathan Worboys Claus Jørgensen 2014-08-08
PXD001099 Piezo1 integration of vascular architecture with physiological force LC-MSMS PRIDE Homo sapiens LTQ Orbitrap Velos Li et al. (2014) David Beech David J. Beech 2014-08-08
PXD001120 Adenovirus particles SILAC analysis of different batches and mutant virus PRIDE Homo sapiens LTQ Orbitrap Velos Alqahtani et al. (2014) David Matthews David Matthews 2014-08-08
PXD001211 Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver. PRIDE Mus musculus LTQ Orbitrap Velos Mauvoisin et al. (2014) Manfredo Quadroni Frederic Gachon 2014-08-08
PXD001032 SIK2 phosphorylation in response to glucagon or insulin in murine hepatocytes PRIDE Homo sapiens , Mus musculus LTQ Orbitrap; Q TRAP Patel et al. (2014) David Campbell Kei Sakamoto 2014-08-08
PXD000957 Proteomic analysis of human vitreous humor PRIDE Homo sapiens LTQ Orbitrap Velos Murthy et al. (2014) Akhilesh Pandey Akhilesh Pandey 2014-08-08
PXD000954 The Pan-Human Library: A repository of assays to quantify 10 000 proteins by SWATH-MS / SWATH-MS validation data PRIDE Homo sapiens TripleTOF 5600 Dataset with its publication pending George Rosenberger Ruedi Aebersold 2014-08-08
PXD000953 The Pan-Human Library: A repository of assays to quantify 10 000 proteins by SWATH-MS PRIDE Homo sapiens TripleTOF 5600 Dataset with its publication pending George Rosenberger Ruedi Aebersold 2014-08-08
PXD000593 Human CDK Family PRIDE Homo sapiens LTQ Orbitrap Xu et al. (2014) Xu Li Junjie Chen 2014-08-08
PXD000748 LACI Plasma Microvesicle Biomarker PRIDE Homo sapiens QSTAR Datta, Chen & Sze (2014) Siu Kwan Sze Newman Sze 2014-08-07
PXD000513 Photo-cross-linking mass spectrometry for single amino acid assignment of RNA-binding sites in RNA-binding proteins PRIDE Homo sapiens , Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Dataset with its publication pending Timo Sachsenberg Oliver Kohlbacher 2014-08-07
PXD000612 Ultra-deep human phosphoproteome reveals different regulatory nature of Tyr and Ser/Thr-based signaling PRIDE Homo sapiens Q Exactive Sharma et al. (2014) Mario Oroshi Matthias Mann 2014-08-06
PXD000287 Comparative analysis of chicken seminal plasma PRIDE Gallus gallus LTQ Orbitrap Velos Labas et al. (2014) Labas Valerie 2014-08-06
PXD000677 14-3-3 affinity capture to identify new targets of 14-3-3 signaling during dsRNA-stimulation in human keratinocytes. PRIDE Homo sapiens QSTAR Ohman et al. (2014) Tuula Nyman Tuula A Nyman 2014-08-05
PXD001185 Colonization state influences the hemocyte proteome in a beneficial squid-vibrio symbiosis PRIDE Euprymna scolopes (Hawaiian bobtail squid) Q Exactive; TripleTOF 5600 Schleicher et al. (2014) Tyler Schleicher Spencer V. Nyholm 2014-08-05
PXD000657 CSF proteome mapping: Human plasma LC-MS/MS, Part 7 PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Guldbrandsen et al. (2014) Astrid Guldbrandsen 2014-08-05
PXD000656 CSF proteome mapping: Human Plasma LC-MS/MS, Part 6 PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Guldbrandsen et al. (2014) Astrid Guldbrandsen 2014-08-04
PXD000655 CSF proteome mapping: Human cerebrospinal fluid LC-MS/MS, Part 5 PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Guldbrandsen et al. (2014) Astrid Guldbrandsen 2014-08-04
PXD000654 CSF proteome mapping: Human cerebrospinal fluid LC-MS/MS, Part 4 PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Guldbrandsen et al. (2014) Astrid Guldbrandsen 2014-08-04
PXD000653 CSF proteome mapping: Human cerebrospinal fluid LC-MS/MS, Part 3 PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Guldbrandsen et al. (2014) Astrid Guldbrandsen 2014-08-04
PXD000652 CSF proteome mapping: Human cerebrospinal fluid LC-MS/MS, Part 2 PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Guldbrandsen et al. (2014) Astrid Guldbrandsen 2014-08-04
PXD000651 CSF proteome mapping: Human cerebrospinal fluid LC-MS/MS, Part 1 PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Guldbrandsen et al. (2014) Astrid Guldbrandsen 2014-08-04
PXD000154 MSe_Bsubtilis168 PRIDE Bacillus subtilis (strain 168) Synapt MS Muntel et al. (2014) Sandra Maass 2014-08-04
PXD000624 SILAC analysis of PDGF-treated primary bladder smooth muscle cells PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Yang et al. (2014) Wei Yang 2014-08-04
PXD001190 Similar is not the same: Differences in the function of the (hemi-)cellulolytic regulator XlnR (Xlr1/Xyr1) in filamentous fungi PRIDE Aspergillus nidulans TN02A3, Trichoderma reesei QM9414, Aspergillus niger, Fusarium graminearum GZ3639, Magnaporthe oryzae B157 LTQ Orbitrap Elite Klaubauf et al. (2014) Harm Post Ronald Peter de Vries 2014-08-01
PXD000858 SILAC-Based Strategy for Proteome-Wide Analysis of Protein-Ligand Binding Interactions (Part 1/2) PRIDE Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 6520 Quadrupole Time-of-Flight LC/MS Tran, Adhikari & Fitzgerald (2014) Jagat Adhikari Michael C. Fitzgerald 2014-07-31
PXD000860 SILAC-Based Strategy for Proteome-Wide Analysis of Protein-Ligand Binding Interactions (Part 2/2) PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Tran, Adhikari & Fitzgerald (2014) Jagat Adhikari Michael C. Fitzgerald 2014-07-31
PXD000987 Membrane proteomis profile along human colon PRIDE Homo sapiens LTQ Orbitrap van der Post & Hansson (2014) S.S van der Post Gunnar C Hansson 2014-07-31
PXD001072 Characterization of the surfaceome of the metal-reducing bacterium Desulfotomaculum reducens PRIDE Desulfotomaculum reducens (strain MI-1) Q Exactive Dalla Vecchia et al. (2014) Romain Hamelin Marc Moniatte 2014-07-31
PXD000897 Protein Redox Dynamics During Light-to-Dark Transitions in Cyanobacteria and Impacts Due to Nutrient Limitation PRIDE Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum) LTQ Orbitrap; LTQ Orbitrap Velos Ansong et al. (2014) Matthew Monroe Richard D. Smith 2014-07-31
PXD001107 Detection of Dichlorvos Aducts in Hepatocyte Cell Line LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Velos Bui-Nguyen et al. (2014) William Dennis John A Lewis 2014-07-31
PXD000758 Identification of Drosophila centromere associated proteins PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap Barth et al. (2014) Andreas Thomae Axel Imhof 2014-07-31
PXD000801 Effects of Campylobacter jejuni CJIE1 prophage on protein expression experiment 4 PRIDE Campylobacter jejuni subsp. jejuni LTQ Orbitrap Velos Clark et al. (2014) Clifford Clark Garrett R. Westmacott 2014-07-31
PXD000800 Effects of Campylobacter jejuni CJIE1 prophage on protein expression experiment 3 PRIDE Campylobacter jejuni subsp. jejuni LTQ Orbitrap Velos Clark et al. (2014) Clifford Clark Garrett R. Westmacott 2014-07-31
PXD000799 Effects of Campylobacter jejuni CJIE1 prophage on protein expression experiment 2 PRIDE Campylobacter jejuni 10186 LTQ Orbitrap Velos Clark et al. (2014) Clifford Clark Garret R. Westmacott 2014-07-31
PXD000798 Effects of Campylobacter jejuni CJIE1 prophage on protein expression experiment 1 PRIDE Campylobacter jejuni 10227 LTQ Orbitrap Velos Clark et al. (2014) Clifford Clark Garrett R. Westmacott 2014-07-31
PXD000923 Rice Pistil LC-MSMS PRIDE Rice(O. sativa) TripleTOF 5600 Wang et al. (2014) Kun Wang wangkun 2014-07-31
PXD001187 Influence of digestion protocol in Protein Quantitation PRIDE Escherichia coli LTQ Orbitrap Velos Chiva, Ortega & Sabidó (2014) Cristina Chiva Eduard Sabidó 2014-07-30
PXD000249 DNA repair in Mycoplasma gallisepticum PRIDE Mycoplasma gallisepticum TripleTOF 5600 Gorbachev et al. (2013) Dmitry Alexeev Dmitry Ischenko 2014-07-30
PXD001049 Nitrated protein profile of rat hypoxic brain PRIDE Rattus norvegicus 4800 Proteomics Analyzer Peinado et al. (2014) Santos Blanco Maria Angeles Peinado 2014-07-30
PXD000459 Identification of SUMO sites by LC-MSMS PRIDE Homo sapiens LTQ Orbitrap Velos Impens et al. (2014) Francis Impens 2014-07-29
PXD001029 Species identification of archaeological skin objects from Danish bogs PRIDE Capra hircus , Bos taurus , Ovis aries Q Exactive; LTQ Orbitrap Velos Brandt et al. (2014) Enrico Cappellini Enrico Cappellini 2014-07-29
PXD000909 Silkworm testis LC-MS/MS PRIDE Bombyx mori (Silk moth) Q Exactive Zhang et al. (2014) Yan Zhang Ping Zhao 2014-07-28
PXD000349 2D-DIGE global protein profiling of alcohol-dependent mouse brain PRIDE Mus musculus instrument model: AB SCIEX TOF/TOF™ 5800 System Gorini, Roberts & Mayfield (2013) Giorgio Gorini 2014-07-28
PXD000813 Sex-partitioning of the Plasmodium falciparum gametocyte proteome provides insight into falciparum-specific cell biology PRIDE Homo sapiens , Plasmodium falciparum 6520 Quadrupole Time-of-Flight LC/MS Tao et al. (2014) Dingyin Tao Rhoel R Dinglasan 2014-07-25
PXD000902 Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs PRIDE Xenopus laevis (African clawed frog) LTQ Orbitrap Velos; Q Exactive Smits et al. (2014) A.H. Smits Michiel Vermeulen 2014-07-23
PXD000764 Discovery of cerebrospinal fluid new biomarkers for meningitis in children PRIDE Homo sapiens , Streptococcus pneumoniae (strain ATCC BAA-255 / R6) LTQ Orbitrap Velos Ternent et al. (2014) Da Qi Rob Beynon 2014-07-22
PXD001157 Oligosaccharide Substrate Preferences of Human Extracellular Sulfatase Sulf2 PRIDE Bos taurus 6520 Quadrupole Time-of-Flight LC/MS Huang et al. (2014) Yu Huang Joseph Zaia 2014-07-22
PXD000756 Comparative analysis of the secretome from a model filarial nematode (Litomosoides sigmodontis) reveals maximal diversity in gravid female parasites PRIDE Litomosoides sigmodontis (Filarial nematode worm) LTQ Orbitrap Armstrong et al. (2014) Stuart Armstrong Benjamin Makepeace 2014-07-22
PXD000594 An investigation into the protein composition of the Glossina morsitans morsitans peritrophic matrix PRIDE Glossina morsitans instrument model: LTQ; LTQ Rose et al. (2014) Stuart Armstrong 2014-07-22
PXD000534 Identification of novel biomarker candidates for the immunohistochemical diagnosis of cholangiocellular carcinoma - LC-MS Part PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Padden et al. (2014) Julian Uszkoreit 2014-07-22
PXD000471 Characterization of functional reprogramming during osteoclast development using quantitative proteomics and mRNA profiling PRIDE Mus musculus LTQ Orbitrap Velos An et al. (2014) Aleksandra Nita-Lazar 2014-07-22
PXD000990 Cocaine and Environmental Enrichment Proteomics Study of Rat Nucleus Accumbens PRIDE Rattus norvegicus LTQ Orbitrap Velos Lichti et al. (2014) Cheryl Lichti Thomas Green 2014-07-22
PXD000881 Identification of Drosophila USP2 partners PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap Velos Engel et al. (2014) Yohann Couté Christophe Bruley 2014-07-18
PXD000357 Identification of ERK1 direct substrates using stable isotope labeled kinase assay linked phosphoproteomics PRIDE Homo sapiens LTQ Orbitrap Velos Xue et al. (2014) Liang Xue 2014-07-17
PXD001073 Metallothionein-like peptides of Russula atropurpurea PRIDE Russula atropurpurea maXis Leonhardt et al. (2014) Jiri Santrucek Pavel Kotrba 2014-07-16
PXD001025 Basement Membranes from Human Retinal Blood Vessels, Inner Limiting Membranes, and Lens Capsules PRIDE Homo sapiens LTQ Orbitrap Velos Uechi et al. (2014) Guy Uechi Guy T. Uechi 2014-07-16
PXD000931 Disclosure of selective advantages in the “modern” sublineage of the Mycobacterium tuberculosis Beijing genotype family by quantitative proteomics. PRIDE Mycobacterium tuberculosis C LTQ FT de Keijzer et al. (2014) Jeroen de Keijzer Peter van Veelen 2014-07-16
PXD000364 A magnetic immunoenrichment strategy for N-terminal-oriented proteogenomics applied to the marine bacterium Roseobacter denitrificans PRIDE Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans) LTQ Orbitrap Bland, Bellanger & Armengaud (2014) Jean ARMENGAUD 2014-07-16
PXD000441 Human AML cell lines LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Velos; LTQ Orbitrap Elite Aasebø et al. (2014) Elise Aasebø Frode Steingrimsen Berven 2014-07-15
PXD000683 Genomics and Proteomics Provide New Insight into the Commensal and Pathogenic Lifestyles of Bovine and Human-associated Staphylococcus epidermidis PRIDE Staphylococcus epidermidis QSTAR Savijoki et al. (2014) Pia Siljamäki Tuula A Nyman 2014-07-15
PXD000744 CNB Lipid Rafts reAnalysis. PRIDE Homo sapiens Bruker Daltonics esquire series Dataset with its publication pending J. Alberto Medina-Aunon J.P. Albar 2014-07-14
PXD000662 Proteomic profiling and characterization of differential allergens in the nematodes Anisakis simplex sensu stricto and A. pegreffii PRIDE Anisakis simplex instrument model: 4800 Plus MALDI TOF/TOF Arcos et al. (2014) Sergio Ciordia Higuera 2014-07-11
PXD000396 Development and performance evaluation of an ultra-low flow nano liquid chromatography-tandem mass spectrometry set-up PRIDE Homo sapiens Q Exactive Köcher et al. (2014) thomas koecher 2014-07-10
PXD000905 Proteomic signatures of the Pacific oyster Crassostrea gigas cellular response to Ostreid herpes virus -1 (OsHV-1) infection: a metabolic response. PRIDE Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Bruker Daltonics HCT Series Corporeau et al. (2014) E Com Charles Pineau 2014-07-10
PXD000119 Nano HPLC Chip Ion Trap MS/MS of human pancreatic cancer cells PRIDE Homo sapiens instrument model: nano HPLC Chip Ion Trap Brandi et al. (2013) Daniela Cecconi 2014-07-10
PXD001038 Differentially embedded glioblastoma tumor protein quantitation PRIDE Homo sapiens TripleTOF 5600 Dataset with its publication pending Hannah Johnson Forest M White 2014-07-09
PXD000161 Protemoic analysis of Yeast during retenostat cultivation PRIDE Saccharomyces cerevisiae (Baker's yeast) instrument model: Q-exactive; Q Exactive Dataset with its publication pending N. Binai 2014-07-09
PXD000384 V5-tagged LIMD1 in HEK293 cells with or without JNK2 activation PRIDE Homo sapiens instrument model: LTQ; LTQ Sun & Irvine (2013) Gongping Sun 2014-07-09
PXD000722 pTyr-CoIP HP/AGS PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending Christian Koehler Bernd Thiede 2014-07-09
PXD000253 Quantitative Mass Spectrometry Reveals Plasticity of Metabolic Networks in Mycobacterium smegmatis PRIDE Mycobacterium smegmatis (strain ATCC 700084 / mc155) LTQ Orbitrap Elite Chopra et al. (2014) Romain Hamelin Moniatte 2014-07-09
PXD000670 Phosphoproteomics combined with quantitative 14-3-3-affinity capture identifies SIRT1 and RAI as new regulators of cytosolic dsRNA-induced innate immune response PRIDE Homo sapiens QSTAR Ohman et al. (2014) Tuula Nyman Tuula Nyman 2014-07-08
PXD000978 Proteomic profiling of MDC1A muscle using TMT quantitation, Bruno Oliveira PRIDE Mus musculus LTQ Orbitrap Menezes de Oliveira et al. (2014) Carina Sihlbom Carina Sihlbom 2014-07-08
PXD000710 Proteogenomics of Venturia pirina PRIDE Venturia pirina ultraflex; Bruker Daltonics HCT Series; LTQ Orbitrap Elite Cooke et al. (2014) Ira Cooke Suresh Mathivanan 2014-07-02
PXD001001 A substrate trapping approach identifies proteins regulated by reversible S-nitrosylation PRIDE Homo sapiens , Mus musculus LTQ Orbitrap Ben-Lulu et al. (2014) Tamar Ziv Moran Benhar 2014-07-02
PXD001020 Redox-state of pentraxin 3 as a novel biomarker for resolution of inflammation and survival in sepsis PRIDE Mus musculus LTQ Orbitrap Cuello et al. (2014) Xiaoke Yin Manuel Mayr 2014-07-01
PXD000496 Proteomics of TGF beta signaling PRIDE Homo sapiens Q Exactive Dataset with its publication pending Mario Oroshi 2014-07-01
PXD000216 Proteome Changes Induced by Imatinib and Novel Imatinib Derivatives in K562 Human Chronic Myeloid Leukemia Cells PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Dataset with its publication pending Pieter-Jan De Bock 2014-06-30
PXD000875 The membrane proteome of Medicago truncatula roots displays qualitative and quantitative changes in response to arbuscular mycorrhizal symbiosis PRIDE Medicago truncatula var. truncatula LTQ Orbitrap Abdallah et al. (2014) cosette abdallah Ghislaine Recorbet 2014-06-30
PXD000577 PhosFox: a software tool for peptide-level processing of LC-MS/MS-based phosphoproteomic data PRIDE Homo sapiens QSTAR Söderholm et al. (2014) Tuula Nyman 2014-06-30
PXD000536 HCMV-NEC analysis PRIDE Homo sapiens , Human cytomegalovirus (strain AD169) (HHV-5) (Human herpesvirus 5) LTQ Orbitrap Velos Milbradt et al. (2014) Yohann Couté Christophe Bruley 2014-06-30
PXD001092 Extracellular Matrix Signatures of Human Primary Metastatic Colon Cancers and their Liver Metastases MassIVE Homo sapiens LTQ Orbitrap Dataset with its publication pending Karl Clauser Steven A. Carr 2014-06-27
PXD001053 Rescue of disrupted mechanotransduction as a new therapeutic strategy in human dilated cardiomyopathy PRIDE Mus musculus LTQ Orbitrap Dataset with its publication pending Jason Maynes Jason T Maynes 2014-06-26
PXD000015 Esca proper and apoplexy on trunk wood of Vitis vinifera L. cv.Chardonnay PRIDE Vitis Bruker Daltonics amaZon series; instrument model: Bruker Ion Trap amaZon Dataset with its publication pending Tchilabalo Dilezitoko ALAYI 2014-06-25
PXD000435 Potato secretome during Phytophthora infection PRIDE Solanum tuberosum instrument model: LTQ Orbitrap XL; LTQ Orbitrap XL Dataset with its publication pending Fredrik Levander 2014-06-24
PXD000439 Reconstructing targetable pathways in lung cancer by integrating diverse omics data PRIDE Homo sapiens LTQ Velos Balbin et al. (2013) Damian Fermin 2014-06-24
PXD001077 PeptideShaker PRIDE Pyrococcus furiosus LTQ Orbitrap Velos Vaudel et al. (2012) Marc Vaudel Lennart Martens 2014-06-24
PXD000502 Mouse cerebellum (phospho)proteome LC-MSMS PRIDE Mus musculus Q Exactive; LTQ Orbitrap Elite Corradini et al. (2014) Eleonora Corradini 2014-06-17
PXD001030 Proteomic analysis of proteins related to rice grain chalkiness using iTRAQ based on a notched-belly mutant with white-belly PRIDE Rice(O. sativa) TripleTOF 5600 Lin et al. (2014) Zhaomiao Lin Zhenghui Liu 2014-06-17
PXD000629 Proteomics analysis of B. bigemina PRIDE Babesia bigemina, Babesia sp. LTQ Orbitrap; instrument model: LTQ Orbitrap Jackson et al. (2014) Dong Xia 2014-06-16
PXD000783 The Phophoproteome of Chlamydomonas reinhardtii PRIDE Chlamydomonas reinhardtii CC3269 LTQ Orbitrap Velos; TripleTOF 5600 Wang et al. (2014) William Slade Leslie M. Hicks 2014-06-11
PXD000404 Comparative Proteome Profiling of Bovine and Human Staphylococcus epidermidis Strains to Search for Cell-surface Bound Factors with Plausible Roles in Virulence or Adaptation PRIDE Staphylococcus epidermidis QSTAR Siljamäki et al. (2014) Pia Siljamäki Tuula A Nyman 2014-06-10
PXD001047 Additional precursor purification in isobaric mass tagging experiments by traveling wave ion mobility separation (TWIMS). PRIDE Homo sapiens , Saccharomyces cerevisiae (Baker's yeast) Synapt MS Shliaha et al. (2014) Pavel Shliaha Kathryn Susan Lilley 2014-06-10
PXD000362 Systems Biology Proteomic Analysis of Cerebral Cavernous Malformation PRIDE Homo sapiens LTQ Orbitrap Edelmann et al. (2014) Kevin Knagge 2014-06-09
PXD000817 Phosphoproteome profiles of the phytopathogenic fungi Alternaria brassicicola and Botrytis cinerea PRIDE Alternaria brassicae, Botryotinia fuckeliana (strain B05.10) (Noble rot fungus) (Botrytis cinerea) LTQ Davanture et al. (2014) Marlène Davanture Michel Zivy 2014-06-09
PXD000186 AtT 20 endogenous peptides PRIDE Mus musculus LTQ Orbitrap Hayakawa et al. (2013) Eisuke Hayakawa 2014-06-09
PXD000591 Human Adenovirus 5 (HAdV5), LC-MSMS PRIDE Human adenovirus C serotype 5 (HAdV-5) (Human adenovirus 5) LTQ Orbitrap; Q Exactive Benevento et al. (2014) Marco Benevento Albert J.R. Heck 2014-06-09
PXD000761 Phosphoproteome profiling of toll-like receptor response to different ligand stimulation in macrophages identifies differences in global phosphorylation dynamics PRIDE Mus musculus LTQ Orbitrap Velos Sjoelund, Smelkinson & Nita-Lazar (2014) Aleksandra Nita-Lazar Aleksandra Nita-Lazar 2014-06-09
PXD000948 Macro-porous Reversed Phase Separation of Proteins Combined with Reversed Phase Separation of Phosphopeptides and Tandem Mass Spectrometry for Profiling the Phosphoproteome of MDA-MB-231 cells PRIDE Homo sapiens Waters instrument model Ye & Li (2014) Xiaoxia Ye Xiaoxia Ye 2014-06-06
PXD000878 Phosphoproteomics of MuSK Signaling PRIDE Mus musculus LTQ Orbitrap Velos Duernberger et al. (2014) Gerhard Duernberger Karl Mechtler 2014-06-05
PXD000558 Phosphoproteomics of MuSK Signaling PRIDE Mus musculus LTQ Orbitrap Velos Duernberger et al. (2014) Gerhard Duernberger Karl Mechtler 2014-06-05
PXD000501 In-depth proteomic analysis of secretome and whole cells of mouse astrocyte PRIDE Mus musculus Q Exactive Han et al. (2014) Dohyun Han 2014-06-05
PXD000548 Proteome analyses of the human anterior temporal lobe PRIDE Homo sapiens LTQ Orbitrap Martins-de-Souza et al. (2014) Daniel Martins-de-Souza Daniel Martins-de-Souza 2014-06-05
PXD000547 Proteome of the Human Corpus Callosum PRIDE Homo sapiens LTQ Orbitrap Martins-de-Souza et al. (2014) Daniel Martins-de-Souza Daniel Martins-de-Souza 2014-06-05
PXD000457 Large scale proteomics of cholesteatoma PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Britze et al. (2014) Johan Palmfeldt 2014-06-04
PXD000631 Comparative Exoprotein Profiling of Different Staphylococcus epidermidis strains Reveals Potential Link between Non-classical Protein Export and Virulence PRIDE Staphylococcus epidermidis QSTAR Siljamäki et al. (2014) Pia Siljamäki Tuula A Nyman 2014-06-04
PXD000587 Large-scale proteome characterization of the cassava root PRIDE Manihot esculenta (Jatropha manihot) LTQ Orbitrap XL Vanderschuren et al. (2014) Katja Baerenfaller Herve Vanderschuren 2014-06-03
PXD000866 iPSC-derived neurons from GBA1-associated Parkinson's disease patients show autophagic/lysosomal dysfunction and impaired calcium homeostasis PRIDE Homo sapiens LTQ Orbitrap Elite Schöndorf et al. (2014) Fiona McAllister Michela Deleidi 2014-06-03
PXD001007 Genome-wide identification and functional analysis of Apobec-1 mediated C-to-U RNA editing in mouse small intestine and liver PRIDE Mus musculus Q Exactive Blanc et al. (2014) Johannes Graumann Johannes Graumann 2014-06-02
PXD000926 Deep Proteomics of the Xenopus laevis Egg using an mRNA-derived Reference Database PRIDE Xenopus laevis (African clawed frog) Q Exactive Wühr et al. (2014) Martin Wuehr Steven Gygi 2014-05-30
PXD000871 Cell-Specific Labeling Enzymes For Analysis of Cell-Cell Communication in Continuous Co-Culture, Part 2 / 2 PRIDE Mus musculus LTQ Orbitrap Tape et al. (2014) Christopher Tape Claus Jorgensen 2014-05-29
PXD000870 Cell-Specific Labeling Enzymes For Analysis of Cell-Cell Communication in Continuous Co-Culture, Part 1 / 2 PRIDE Homo sapiens , Mus musculus LTQ Orbitrap Tape et al. (2014) Christopher Tape Claus Jorgensen 2014-05-29
PXD000743 Insight into the protein composition of immunoglobulin light chain deposits of eyelid, orbital, and conjunctival amyloidosis. PRIDE Homo sapiens TripleTOF 5600 Dataset with its publication pending Nadia Sukusu Nielsen Jan J. Enghild 2014-05-29
PXD000368 Grayling Pleiotropy on plastic adaptive protein expression change PRIDE Thymallus thymallus (Salmo thymallus) LTQ Orbitrap Velos Papakostas et al. (2014) Spiros Papakostas 2014-05-28
PXD000865 Mass spectrometry based draft of the human proteome PRIDE Homo sapiens LTQ Orbitrap Velos; LTQ Orbitrap Elite Wilhelm et al. (2014) Hannes Hahne Bernhard Kuster 2014-05-28
PXD000781 Huwe1-mediated ubiquitylation of Dvl defines a novel negative feedback loop in the Wnt signaling pathway PRIDE Mus musculus LTQ Orbitrap Elite de Groot et al. (2014) Katerina Sedova Zbynek Zdrahal 2014-05-28
PXD000746 Proteomics of Fuchs’ Endothelial Corneal Dystrophy indicate altered assembly and modulation of the extracellular matrix in Descemet’s membrane PRIDE Homo sapiens TripleTOF 5600 Poulsen et al. (2014) Ebbe Toftgaard Poulsen Jan Johannes Enghild 2014-05-27
PXD000873 Analyses of the Xylem Sap Proteomes Identified Candidate Fusarium virguliforme Proteinacious Toxins PRIDE Glycine max (Glycine hispida), Fusarium virguliforme LTQ Orbitrap Velos Abeysekara & Bhattacharyya (2014) Nilwala Abeysekara Madan K Bhattacharyya 2014-05-23
PXD000976 Rat Neural Stem Cell Phosphoproteome PRIDE Rattus norvegicus LTQ Orbitrap Dataset with its publication pending Xuyang Zhao Jianguo Ji 2014-05-23
PXD000625 Hepatocyte-specific BIRC5 (Survivin)-knockout-mouse model, Subcellular fractionation PRIDE Mus musculus LTQ Orbitrap; instrument model: LTQ Orbitrap Bracht et al. (2014) Thilo Bracht 2014-05-22
PXD000836 HOPE-fixation of lung tissue allows retrospective proteome and phosphoproteome studies PRIDE Homo sapiens LTQ Orbitrap Velos Shevchuk et al. (2014) Olga Shevchuk Lothar Jänsch 2014-05-22
PXD000293 Ti4+-IMAC label-free quantification PRIDE Homo sapiens LTQ Orbitrap Elite de Graaf et al. (2014) Piero Giansanti Albert J. R. Heck 2014-05-22
PXD000993 Virion proteome of Cafeteria roenbergensis virus strain BV-PW1 PRIDE Cafeteria roenbergensis LTQ Orbitrap Dataset with its publication pending Matthias Fischer Leonard Foster 2014-05-22
PXD000223 Nipped in the bud: a microbial effector destabilizes MADS-domain transcription factors PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap; instrument model: LTQ Orbitrap MacLean et al. (2014) Gerhard Saalbach 2014-05-21
PXD000241 Serine Hydrolases from E. Coli PRIDE Escherichia coli TripleTOF 5600 Dataset with its publication pending Dmitry Shamshurin 2014-05-20
PXD000237 Beta vulgaris (sugarbeet) infected with BNYVV (beet necrotic yellow vein virus) PRIDE Beta vulgaris (Sugar beet) LTQ Orbitrap Velos Dataset with its publication pending Carolyn Broccardo 2014-05-20
PXD000176 Identifying RasGAP SH2 binding partners in Drosophila using mass spectrometry PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap; instrument model: LTQ-Orbitrap Rowshanravan et al. (2014) Behzad Rowshanravan 2014-05-20
PXD000560 Chasing protein arginine phosphorylation: development of a selective enrichment method using a trapping mutant phosphatase PRIDE Bacteria, Bacillus subtilis subsp. subtilis str. 168 LTQ Orbitrap Velos Trentini et al. (2014) Debora Broch Trentini Karl Mechtler 2014-05-19
PXD000568 Protein abundance changes and ubiquitylation targets identified upon inhibition of the proteasome with Syringolin A PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap XL Svozil et al. (2014) Katja Baerenfaller Katja Baerenfaller 2014-05-19
PXD000894 A global non-coding RNA system modulates fission yeast protein levels in response to stress PRIDE Schizosaccharomyces pombe 927 LTQ Orbitrap Leong et al. (2014) Hui Sun Leong Crispin J Miller 2014-05-19
PXD000789 H2A.Bbd localizes to DNA synthesis sites PRIDE Mus musculus LTQ Orbitrap Sansoni et al. (2014) Andreas Schmidt Axel Imhof 2014-05-18
PXD000041 Hrp3-TAP_Purification from Schizosaccharomyces pombe PRIDE Schizosaccharomyces pombe 972h- LTQ Orbitrap; instrument model: LTQ-Orbitrap Pointner et al. (2012) Ignasi Forne 2014-05-16
PXD000835 Pacific Oyster Ctenidia Proteomics PRIDE Crassostrea gigas (Pacific oyster) (Crassostrea angulata) LTQ Orbitrap Dataset with its publication pending Emma Timmins-Schiffman Steven Roberts 2014-05-15
PXD000480 Rat prefrontal cortex LC-MS/MS PRIDE Rattus norvegicus LTQ Orbitrap Farrelly et al. (2014) Lorna Farrelly 2014-05-13
PXD000937 Mariprofundus ferroooxydans PV-1 osmotic shock vs extraction with NaOH LC-MSMS PRIDE Mariprofundus ferrooxydans PV-1 LTQ Orbitrap Dataset with its publication pending Roman Barco Katrina Edwards 2014-05-13
PXD000663 A high-confidence glycosome proteome for procyclic form Trypanosoma brucei by epitope-tag organelle enrichment and SILAC PRIDE Trypanosoma brucei LTQ Orbitrap Velos Güther et al. (2014) Michael Urbaniak 2014-05-13
PXD000681 Probing tyrosine kinase inhibitors specificity PRIDE Homo sapiens LTQ Orbitrap; LCQ Classic; LTQ Orbitrap Velos; LTQ Orbitrap Elite; TripleTOF 5600 Giansanti et al. (2014) Piero Giansanti Albert J.R. Heck 2014-05-12
PXD000574 Dectin-1/Syk pathway activates autophagy-dependent unconventional protein secretion from human macrophages PRIDE Homo sapiens QSTAR Öhman et al. (2014) Tuula Nyman 2014-05-12
PXD000684 Proteomics of Pseudomonas aeruginosa PAO1 and PA14 PRIDE Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228), Pseudomonas aeruginosa PA14 LTQ Orbitrap Kwon et al. (2014) Taejoon Kwon Edward Marcotte 2014-05-08
PXD000592 Mouse Core Acrosomal Matrix LC-MSMS PRIDE Mus musculus LTQ Orbitrap Velos Guyonnet, Egge & Cornwall (2014) Dr Gail A Cornwall 2014-05-07
PXD000608 Proteomics of cerebrospinal fluid microvesicles PRIDE Homo sapiens Q Exactive Chiasserini et al. (2014) D Chiasserini 2014-05-07
PXD000807 Human oral cancer brush biopsy iTRAQ PRIDE Homo sapiens LTQ Orbitrap Velos Yang et al. (2014) Tim Griffin Timothy Jon Griffin 2014-05-07
PXD000495 Pea Seedling Mitochondrial Lysine Acetylome PRIDE Pisum sativum (Garden pea) LTQ Orbitrap Smith-Hammond, Hoyos & Miernyk (2014) Colin Smith-Hammond Jan A. Miernyk 2014-05-01
PXD000318 Spider genomes provide insight into composition, function and evolution of venom and silk PRIDE Stegodyphus mimosarum, Acanthoscurria geniculata TripleTOF 5600; instrument model: TripleTOF 5600 Sanggaard et al. (2014) Kristian Wejse Sanggaard 2014-05-01
PXD000932 The Haemophilus ducreyi LspA1 Protein Inhibits Phagocytosis By Using a New Mechanism Involving Activation of C-Terminal Src Kinase PRIDE Homo sapiens LTQ Orbitrap Elite Dodd et al. (2014) David Trudgian Eric Hansen 2014-04-29
PXD000850 SIRT_mutant interactome PRIDE Homo sapiens LTQ Orbitrap Velos Lee et al. (2014) Dae-Kyum Kim Kwan Yong Choi 2014-04-28
PXD000159 SIRT6 and SIRT7 binding proteome PRIDE Homo sapiens LTQ Orbitrap Lee et al. (2014) Dae-Kyum Kim 2014-04-28
PXD000505 Campylobacter concisus UNSWCD GeLC-MSMS PRIDE Campylobacter concisus UNSWCD instrument model: ESI-TRAP Pang et al. (2014) A Tay 2014-04-28
PXD000504 Campylobacter concisus strain BAA-1547 GeLC-MSMS PRIDE Campylobacter concisus (strain 13826) instrument model: ESI-TRAP Pang et al. (2014) A Tay 2014-04-28
PXD000928 Melanoma metastases: association between S100A13 expression and chemotherapy resistance PRIDE Homo sapiens LTQ Orbitrap Velos Azimi et al. (2014) Maria Pernemalm Janne Lehtiö 2014-04-25
PXD000070 Plasmodium falciparum schizont phosphoproteome PRIDE Plasmodium falciparum (isolate 3D7) LTQ Orbitrap Velos; instrument model: LTQ Orbitrap Velos ETD Collins et al. (2014) Mark Collins 2014-04-24
PXD000561 A draft map of the human proteome PRIDE Homo sapiens LTQ Orbitrap Velos; LTQ Orbitrap Elite Pinto et al. (2014)Kim et al. (2014) Akhilesh Pandey Akhilesh Pandey 2014-04-24
PXD000917 Proteomic identification of anti-tetanus toxoid antibodies from human serum (HD1) PRIDE Homo sapiens LTQ Orbitrap Velos Lavinder et al. (2014)Boutz et al. (2014) Daniel Boutz Edward Marcotte 2014-04-24
PXD000916 Proteomic identification of monoclonal antibodies from rabbit serum and analysis of FDR using differential cysteine labeling PRIDE Oryctolagus cuniculus LTQ Orbitrap Velos Boutz et al. (2014) Daniel Boutz Edward Marcotte 2014-04-24
PXD000671 Leishmania donovani phosphoproteome during differentiation and as a response to environmental signals PRIDE Leishmania donovani QSTAR Tsigankov et al. (2014) Polina Tsigankov Dan Zilberstein 2014-04-24
PXD000704 Glycoprotein Signatures for Aggressive Prostate Cancer via SWATH mass spectrometry PRIDE Homo sapiens TripleTOF 5600 Liu et al. (2014) Yansheng Liu Ruedi Aebersold 2014-04-23
PXD000133 Equine Cerebrospinal Fluid PRIDE Equus caballus LTQ Dataset with its publication pending Carolyn Broccardo 2014-04-23
PXD000532 SOD cambium Proteomics Data PRIDE Populus tremula x Populus tremuloides instrument model: Q-TOF Ultima; Q-Tof ultima Srivastava et al. (2013) Joakim Bygdell 2014-04-17
PXD000475 Yersinia enterocolitica SOR17 PRIDE Bacteria, Eubacteriaceae, Yersinia enterocolitica LTQ Orbitrap; instrument model: LTQ Orbitrap Kakoschke et al. (2014) Ombeline Rossier 2014-04-16
PXD000579 A proteome reference map of the wine lactic acid bacterium Oenococcus oeni ATCC BAA-1163 PRIDE Oenococcus oeni instrument model: 4800 Plus MALDI TOF/TOF Mohedano Mde et al. (2014) Sergio Ciordia Higuera 2014-04-16
PXD000414 Quantitiative phosphoproteomic analysis of SKS1 signaling network involved in yeast filamentous growth by LC-MS in combination with SILAC PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Johnson et al. (2014) Hye Kyong Kweon 2014-04-16
PXD000326 A multi-omic analysis of an Enterococcus faecium mutant reveals genetic mutation and dramatic changes of mRNA and protein expressions PRIDE Enterococcus faecalis (Streptococcus faecalis) TripleTOF 5600 Chang et al. (2013) Liu liu 2014-04-16
PXD000350 Sumoylated hnrnpa2b1 controls the sorting of miRNAs into two exosomes through binding to specific motifs PRIDE Homo sapiens LTQ Orbitrap Villarroya-Beltri et al. (2013) Marco Trevisan-Herraz 2014-04-16
PXD000900 Confetti: A Multi-protease Map of the HeLa Proteome for Comprehensive Proteomics PRIDE Homo sapiens Q Exactive; LTQ Orbitrap Elite Guo et al. (2014) David Trudgian Hamid Mirzaei 2014-04-16
PXD000732 Understanding the antimicrobial mechanism of TiO2-based nanocomposite films in a pathogenic bacterium PRIDE Pseudomonas aeruginosa TripleTOF 5600 Kubacka et al. (2014) Sergio Ciordia Juan Pablo Albar Ramirez 2014-04-16
PXD000712 Small proteome in trypanosomes PRIDE Trypanosoma brucei LTQ Orbitrap Ericson et al. (2014) F Butter Mann 2014-04-16
PXD000838 Mitochondrial proteomics investigation of a cellular model of impaired dopamine homeostasis, an early step in Parkinson's disease pathogenesis PRIDE Homo sapiens Synapt MS Alberio et al. (2014) Luisa Pieroni Andrea Urbani 2014-04-15
PXD000680 Stable isotope labeling of phosphoproteins for large-scale phosphorylation rate determination PRIDE Homo sapiens LTQ Orbitrap; Q Exactive; LTQ Orbitrap Elite Molden et al. (2014) Rosalynn Molden Benjamin A Garcia 2014-04-15
PXD000688 Human milk and gastric peptidomics PRIDE Homo sapiens 6520 Quadrupole Time-of-Flight LC/MS Dallas et al. (2014) David Dallas David Dallas 2014-04-15
PXD000038 Proteomics analysis of wound healing in porcine subcutaneous fatty tissue postmonopolar electrosurgery and harmonic blade incisions. PRIDE Sus scrofa domesticus (domestic pig) LCQ Deca XP Plus Nanduri et al. (2013) Ken Pendarvis 2014-04-15
PXD000580 Proteomic analysis of yeast mutant RNA exosome complexes PRIDE Saccharomyces cerevisiae (Baker's yeast) Q-Tof Premier; instrument model: Q-Tof Premier Lourenço, Leme & Oliveira (2013) Rogerio Lourenco 2014-04-15
PXD000509 Identification and monitoring of host cell proteins by mass spectrometry combined with high performance immunochemistry testing PRIDE Escherichia coli LTQ Orbitrap; instrument model: LTQ Orbitrap Bomans et al. (2013) Patrick Bulau 2014-04-15
PXD000289 Sulfolobus acidocaldarius phosphoproteome PRIDE Sulfolobus acidocaldarius Bruker Daltonics HCT Series Reimann et al. (2013) Trong Khoa Pham 2014-04-15
PXD000462 VEGF Study in Primary Human Endothelial Cells PRIDE Homo sapiens LTQ Orbitrap Elite Hang et al. (2013) Nathan Tedford 2014-04-15
PXD000567 Protein abundance changes and ubiquitylation targets identified upon inhibition of the proteasome with Syringolin A PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap XL Svozil et al. (2014) Katja Baerenfaller Katja Baerenfaller 2014-04-15
PXD000566 Protein abundance changes and ubiquitylation targets identified upon inhibition of the proteasome with Syringolin A PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap XL Svozil et al. (2014) Katja Baerenfaller Katja Baerenfaller 2014-04-15
PXD000565 Protein abundance changes and ubiquitylation targets identified upon inhibition of the proteasome with Syringolin A PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap XL Svozil et al. (2014) Katja Baerenfaller Katja Baerenfaller 2014-04-15
PXD000642 Quantitative proteomics of extracellular vesicles released from human primary macrophages upon beta/glucan stimulation PRIDE Homo sapiens QSTAR Cypryk et al. (2014) Tuula Nyman 2014-04-15
PXD000521 Protein abundance changes and ubiquitylation targets identified upon inhibition of the proteasome with Syringolin A PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap XL Svozil et al. (2014) Katja Baerenfaller Katja Baerenfaller 2014-04-15
PXD000374 SRM-analysis of Podospora anserina mitochondria (Plohnke) PeptideAtlas Podospora anserina TSQ Vantage Plohnke et al. (2014) Nicole Plohnke 2014-04-14
PXD000300 Changes in mouse pathways after high-fat diet (Sabido, et al.) PeptideAtlas Mus musculus 4000 QTRAP Sabidó et al. (2013) Eduard Sabidó 2014-04-14
PXD000291 Quantitative microdissected breast cancer analysis (Liu, et al.) PeptideAtlas Homo sapiens Xevo TQ-S Liu et al. (2013) Ning Qing Liu 2014-04-14
PXD000232 Variation across lineages of M. tuberculosis (N. Kruh-Garcia) PeptideAtlas Mycobacterium tuberculosis Xevo TQ-S Kruh-Garcia et al. (2014) Nicole Kruh-Garcia 2014-04-14
PXD000648 MRM dataset of 185 one hit wonders in human liver PeptideAtlas Homo sapiens 4000 QTRAP Chen et al. (2014) Chen Chen Pengyuan Yang 2014-04-14
PXD000469 Proteomics of pollen development PRIDE Nicotiana tabacum (Common tobacco) LTQ Orbitrap Ischebeck et al. (2014) Volker Egelhofer 2014-04-14
PXD000601 Mouse Liver Circadian Proteome PRIDE Mus musculus LTQ Orbitrap Robles, Cox & Mann (2014) Maria S. Robles 2014-04-14
PXD000557 Pine Golgi membranes from xylem enriched by FFE PRIDE Pinus radiata (Monterey pine) instrument model: TripleTOF Parsons et al. (2013) Joshua Heazlewood 2014-04-14
PXD000541 2D-LC/MS/MS analysis of Escherichia coli during exposure an abrupt downshift in water activity PRIDE Escherichia coli LTQ Orbitrap Kocharunchitt et al. (2014) Chawalit Kocharunchitt 2014-04-14
PXD000583 2D-LC/MS/MS analysis of Escherichia coli under optimal growth condition PRIDE Escherichia coli LTQ Orbitrap Kocharunchitt et al. (2014) Chawalit Kocharunchitt 2014-04-14
PXD000635 Multifactorial Comparative Proteomic Study of Cytochrome P450 2E1 Function in Chronic Alcohol Administration PRIDE Mus musculus 4800 Proteomics Analyzer Wang et al. (2014) Rong Wang 2014-04-11
PXD000472 Environmental stress affects the activity of metabolic and growth factor signaling networks and induces autophagy markers in breast cancer cell lines PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Casado et al. (2014) Pedro Casado-Izquierdo 2014-04-11
PXD000248 Characterization of individual mouse cerebrospinal fluid proteomes PRIDE Mus musculus LTQ Orbitrap Velos Smith et al. (2014) Matthew Monroe 2014-04-09
PXD000852 Native protein mapping and visualization of protein interactions in human plasma high-density lipoprotein by 2-DE and LC-MS/MS PRIDE Homo sapiens Synapt MS Jin et al. (2014) Ya Jin Ya Jin 2014-04-07
PXD000445 Proteomic profiling of colorectal adenomas PRIDE Homo sapiens instrument model: LTQ Orbitrap Velos; LTQ Orbitrap Velos Uzozie et al. (2014) Anuli Uzozie PD Dr. Giancarlo Marra 2014-04-03
PXD000170 Identifying sources of tick blood meals using unidentified tandem mass spectral libraries PRIDE Panthera leo , Macropus rufus (Red kangaroo) (Megaleia rufa), Alligator mississippiensis (American alligator), Capra hircus , Colobus guereza (Mantled guereza) (Eastern black-and-white colobus monkey), Strix varia (Barred owl), Eryx colubrinus loveridgei, LCQ Classic Önder Ö et al. (2013) Henry Lam 2014-04-03
PXD000775 Lactate racemase proteins MALDI TOF/TOF PRIDE Lactobacillus plantarum 4800 Proteomics Analyzer Desguin et al. (2014) Pascal Hols MORSOMME Pierre 2014-04-02
PXD000851 Membrane proteomic analysis of colorectal cancer tissue PRIDE Homo sapiens LTQ Orbitrap Kume et al. (2014) Hideaki Kume Takeshi Tomonaga 2014-04-02
PXD000218 System-level analysis of cancer and stomal cell specific proteomes reveals extensive reprogramming of phosphorylation networks by tumor microenvironment PRIDE Homo sapiens , Mus musculus LTQ Orbitrap; instrument model: LTQ Orbitrap Rajeeve et al. (2014) Vinothini Rajeeve 2014-04-02
PXD000510 Synechococcus elongatus PCC7942 proteome's cyclic rhythm by LC-MSMS PRIDE Synechococcus elongatus (strain PCC 7942) (Anacystis nidulans R2) LTQ Orbitrap Velos Guerreiro et al. (2014) Ana C. Guerreiro Albert J.R. Heck 2014-04-02
PXD000540 Wheat leaf phosphoproteome PRIDE Triticum aestivum LTQ Orbitrap Lv et al. (2014) Dong-Wen Lv Yue-Ming Yan 2014-04-01
PXD000864 Label-free based proteomic study of Thermoanaerobacter tengcongensis PRIDE Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Caldanaerobacter subterraneus subsp. tengcongensis) LTQ Orbitrap Velos Dataset with its publication pending Bo Wen Bo Wen 2014-04-01
PXD000433 Quantitative phosphoproteomics of Phytophthora infestans life stages PRIDE Phytophthora infestans instrument model: LTQ Orbitrap XL; LTQ Orbitrap XL Resjö et al. (2014) Svante Resjo 2014-03-27
PXD000090 Bombyx mori anterior silk gland LC-MS/MS PRIDE Bombyx mori (Silk moth) LTQ Orbitrap; instrument model: LTQ-Orbitrap Yi et al. (2013) qiying yi 2014-03-26
PXD000379 DJ-1 as high-fat diet associated protein PRIDE Mus musculus HCTultra; LTQ Orbitrap Elite Poschmann et al. (2014) Gereon Poschmann 2014-03-26
PXD000854 Protein validation of Geobacter Sulfurreducens PRIDE Geobacter sulfurreducens LTQ Orbitrap Dataset with its publication pending Matthew Monroe Richard D. Smith 2014-03-20
PXD000556 E. coli BW25113 and knock-out mutants (delta-pka, delta-arcA and delta-pka_arcA) LC MS/MS PRIDE Escherichia coli, Acyrthosiphon pisum (Pea aphid) LTQ Orbitrap Peebo et al. (2014) Karl Peebo 2014-03-19
PXD000847 Mouse plasma QSRM (Whiteaker et al.) PeptideAtlas Mus musculus 4000 Q-Trap Whiteaker et al. (2011) Terry Farrah Amanda Paulovich 2014-03-18
PXD000846 Human CAP urine (Huettenhain et al.) PeptideAtlas Homo sapiens TSQ Vantage Hüttenhain et al. (2012) Ruth Hüttenhain Ruedi Aebersold 2014-03-18
PXD000845 ATAQS T-47D cell line PeptideAtlas Homo sapiens 4000 Q-Trap Brusniak et al. (2011) Terry Farrah Ruedi Aebersold 2014-03-18
PXD000844 UVic top 45 plasma 2008 (Letarte) PeptideAtlas Homo sapiens 4000 Q-Trap no publication Terry Farrah Ruedi Aebersold 2014-03-18
PXD000843 MRM verification of serum protein biomarkers differentially expressed in Active Tuberculosis in HIV- and HIV+ Individuals (All centers - part 1) PeptideAtlas Homo sapiens QTRAP 5500 no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000842 MRM qualification of serum protein biomarkers differentially expressed in Active Tuberculosis in HIV- and HIV+ Individuals (Brazil) PeptideAtlas Homo sapiens QTRAP 5500 no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000841 MRM qualification of serum protein biomarkers differentially expressed in Active Tuberculosis in HIV- and HIV+ Individuals (US) PeptideAtlas Homo sapiens QTRAP 5500 no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000833 MRM qualifcation of secreted proteins in Brucella-infected/non-infected trophoblast cell lines PeptideAtlas Homo sapiens 4000 Q-Trap no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000840 MRM qualifcation of secreted proteins differentially expressed in Brucella-infected macrophage cells vs non-infected macrophage cells PeptideAtlas Homo sapiens 4000 Q-Trap no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000832 MRM Qualification of Biomarkers of Immunogenicity and Response Prediction of Influenza A H1N1 Vaccine PeptideAtlas Homo sapiens QTRAP 5500 no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000831 MRM Qualification of Biomarkers of Immunogenicity and Response Prediction of Influenza A H5N1 Vaccine PeptideAtlas Homo sapiens QTRAP 5500 no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000830 MRM qualification of plasma/serum protein biomarkers for progression from MTB infection to disease PeptideAtlas Homo sapiens QTRAP 5500 no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000829 MRM verification of plasma/serum protein biomarkers for progression from MTB infection to disease PeptideAtlas Homo sapiens QTRAP 5500 no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000827 MRM verification of serum protein biomarkers differentially expressed in Active Tuberculosis in HIV- and HIV+ Individuals (All centers - part 2) PeptideAtlas Homo sapiens QTRAP 5500 no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000825 MRM Verification of serum protein biomarkers for brucellosis treatment PeptideAtlas Homo sapiens QTRAP 5500 no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000826 MRM qualification of serum proteinMRM qualification of serum protein biomarkers differentially expressed in Active Tuberculosis in HIV- and HIV+ Individuals (South Africa center) PeptideAtlas Homo sapiens QTRAP 5500 no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000824 MRM qualifcation of serum protein biomarkers for brucellosis treatment PeptideAtlas Homo sapiens 4000 Q-Trap Unpublished Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000603 Lung cancer and Normal Lung Tissue LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Ahn et al. (2014) Je-Yoel Cho 2014-03-18
PXD000178 Cotton Fiber Glycoproteome PRIDE Gossypium ultraflex Kumar et al. (2013) Saravanan Kumar 2014-03-18
PXD000272 Low abundance of the matrix arm of complex I in the mitochondria predicts longevity PRIDE Mus musculus LTQ Orbitrap Miwa et al. (2014) Achim Treumann 2014-03-18
PXD000769 Colon cancer stem cell over-expressing Np63α PRIDE Homo sapiens micrOTOF II D'Aguanno et al. (2014) Simona D'Aguanno Prof. Andrea Urbani 2014-03-17
PXD000768 Colon cancer stem cell over-expressing TAp63α PRIDE Homo sapiens micrOTOF II D'Aguanno et al. (2014) Simona D'Aguanno Prof. Andrea Urbani 2014-03-17
PXD000620 Cervico-Vaginal mucus proteins of buffalo PRIDE Bubalus bubalis Thermo Electron instrument model Muthukumar et al. (2014) Subramanian Muthukumar G Archunan 2014-03-17
PXD000821 In vivo SILAC-based proteomics reveals phosphoproteome changes during mouse skin carcinogenesis PRIDE Mus musculus LTQ Orbitrap Velos; LTQ Orbitrap Elite Zanivan et al. (2013) Sara Zanivan Sara Zanivan 2014-03-13
PXD000678 A Proteomic Chronology of Gene Expression through the Cell Cycle in Human Myeloid Leukemia Cells. PRIDE Homo sapiens LTQ Orbitrap Velos; Q Exactive Ly et al. (2014) Vackar Afzal Prof Angus Lamond 2014-03-12
PXD000694 Proteomic analysis of Giardia lamblia ESV and PV organelle enriched fractions PRIDE Giardia intestinalis (strain ATCC 50803 / WB clone C6) (Giardia lamblia) LTQ Orbitrap Wampfler et al. (2014) Adrian Hehl Adrian B. Hehl 2014-03-11
PXD000206 4-plex iTRAQ comparative proteomics Anabaena circinalis PRIDE Dolichospermum circinale AWQC310F, Dolichospermum circinale AWQC131C QSTAR D'Agostino et al. (2014) Paul D'Agostino 2014-03-11
PXD000600 Temporal dynamics of protein synthesis and secretion during LPS activation of macrophages PRIDE Mus musculus LTQ Orbitrap Velos Eichelbaum & Krijgsveld (2014) Katrin Eichelbaum 2014-03-07
PXD000686 Tousled-like kinases phosphorylate Asf1 to promote histone supply during DNA replication PRIDE Homo sapiens LTQ Orbitrap Klimovskaia et al. (2014) Clifford Young Ole Nørregaard Jensen 2014-03-06
PXD000363 PG-regulated Synechocystis sp. PCC6803 PRIDE Synechocystis sp., Synechocystis sp. PCC 6803 LTQ FT; instrument model: LTQ FT; instrument model: LTQFT Talamantes et al. (2014) Laszlo Prokai 2014-03-06
PXD000181 Short cationic antimicrobial peptide RWRWRW-NH2 inhibits cell wall biosynthesis and bacterial respiration by delocalizing essential membrane proteins PRIDE Bacillus subtilis (strain 168) LTQ Orbitrap Dataset with its publication pending Andreas Otto 2014-03-06
PXD000618 Characterization of the proteome of human blood platelet sercretory granules using gas-phase fractionation (GPF) PRIDE Homo sapiens LTQ Orbitrap Velos Zufferey et al. (2014) Pierre Fontana Pierre Fontana 2014-03-06
PXD000348 ESI-LC-MS/MS of magnetosome membrane enclosing magnetite particles of Rhodospirillum rubrum_ABG6X PRIDE Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) LTQ Orbitrap; instrument model: LTQ Orbitrap Kolinko et al. (2014) Isabel Kolinko 2014-03-05
PXD000356 Mass spectrometric analysis of Podospora anserina mitochondria PRIDE Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) LTQ Orbitrap Plohnke et al. (2014) Nicole Plohnke 2014-03-05
PXD000046 Mouse Cerebellum DNA-Damage 2D LC-MS/MS PRIDE Mus musculus LTQ Orbitrap Velos de Graaf et al. (2013) Erik L. de Graaf 2014-03-05
PXD000226 Human Uterine Smooth Muscle S-nitrosoproteome PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Ulrich et al. (2013) Craig Ulrich 2014-03-03
PXD000479 Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis PRIDE Danio rerio (Brachydanio rerio) 6520 Quadrupole Time-of-Flight LC/MS; LTQ Orbitrap Velos Kelkar et al. (2014) Akhilesh Pandey 2014-02-26
PXD000738 SILAC-based proteomic quantification of chemoattractant induced cytoskeleton dynamics on a second to minute timescale PRIDE Dictyostelium discoideum (Slime mold) LTQ Orbitrap Velos Sobczyk, Wang & Weijer (2014) Vackar Afzal Cornelis J Weijer 2014-02-26
PXD000173 Immunoprecipitated proteins associated with foci-forming Eno2p-EGFP-FLAG or non-forming Eno2V22Ap-EGFP-FLAG in yeast Saccharomyces cerevisiae under hypoxia PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Miura et al. (2013) Mitsuyoshi Ueda 2014-02-25
PXD000177 Quantitative Phosphoproteomics after auxin-stimulated lateral root induction PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap XL Zhang et al. (2013) Hongtao Zhang 2014-02-25
PXD000434 Erythrocyte Proteome & Terminome PRIDE Homo sapiens LTQ Orbitrap Lange et al. (2014) Philipp Lange 2014-02-24
PXD000511 Cdh1 Proteomic Analysis PRIDE Mus musculus LTQ Orbitrap Velos Eguren et al. (2014) Fernando Garcia 2014-02-20
PXD000337 N-terminal-oriented proteogenomics for the marine bacterium Roseobacter denitrificans PRIDE Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans) LTQ Orbitrap Bland et al. (2014) Jean ARMENGAUD 2014-02-19
PXD000493 Proteomics dataset for interphase chromatin probabilities PRIDE Homo sapiens LTQ Orbitrap; LTQ Orbitrap Velos Kustatscher et al. (2014) Georg Kustatscher Juri Rappsilber 2014-02-18
PXD000682 Transcriptomic and Proteomic Response of HC-04 to hepatocyte growth factor (HGF) PRIDE Homo sapiens 6520 Quadrupole Time-of-Flight LC/MS Tao et al. (2014) Dingyin Tao Rhoel R. Dinglasan 2014-02-18
PXD000354 Rat cardiac mitochondrial proteome and phosphoproteome PRIDE Rattus norvegicus instrument model: LTQ Orbitrap VelosPro Ferreira et al. (2014) Francesco Mattia Mancuso 2014-02-14
PXD000675 A Targeted in Vivo SILAC Approach for Quantification of Drug Metabolism Enzymes: Regulation by the Constitutive Androstane Receptor PRIDE Mus musculus LTQ Orbitrap Macleod et al. (2014) Kenneth MacLeod Jeffrey Tze-Jen Huang 2014-02-14
PXD000581 Combined Proteomic and Transcriptomic Interrogation of the Venom Gland of Conus geographus PRIDE Conus geographus (Geography cone) (Nubecula geographus) instrument model: Ultraflex III MALDI TOF/TOF Safavi-Hemami et al. (2014) Paul Veith 2014-02-14
PXD000460 Pithovirus particle proteome PRIDE unidentified instrument model: LTQ-Orbitrap Velos pro; LTQ Orbitrap Velos Legendre et al. (2014) Yohann Coute 2014-02-13
PXD000401 Human CSF LC-MS PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Elise Aasebo 2014-02-13
PXD000604 Differentially expressed proteins in benign and malignant adrenocortical tumors PRIDE Homo Sapiens LTQ Orbitrap Kjellin et al. (2014) Hanna Kjellin 2014-02-11
PXD000597 Quantitative phosphoproteomics unveils temporal dynamics of thrombin signaling in human endothelial cells PRIDE Homo sapiens LTQ Orbitrap Elite van den Biggelaar et al. (2014) Sara Zanivan Sara Zanivan 2014-02-07
PXD000745 Quantification of ErbB network proteins in three cell types PeptideAtlas Homo sapiens TSQ Vantage; QTRAP 5500 Kiel et al. (2014) H. Alexander Ebhardt Ruedi Aebersold 2014-02-06
PXD000507 Acetylation Dynamics and Stoichiometry in Saccharomyces cerevisiae PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos; Q Exactive Weinert et al. (2014) Brian Weinert 2014-02-03
PXD000072 High precision platelet releasate definition by quantitative reversed protein profiling PRIDE Homo sapiens instrument model: LTQ Orbitrap Velos; LTQ Orbitrap Velos Wijten et al. (2013) Patrick Wijten 2014-02-03
PXD000202 Archael ubiquitin-like SAMP3 is isopeptide-linked to Proteins by an UbaA-dependent mechanism PRIDE Haloferax volcanii (Halobacterium volcanii) LTQ Orbitrap Velos Miranda et al. (2014) Haike Antelmann 2014-02-03
PXD000410 Peatland Soil Community Proteomics PRIDE unidentified soil organism LTQ Orbitrap Elite Dataset with its publication pending Eun-Hae Kim 2014-02-03
PXD000450 HLA-B40-peptidome PRIDE Homo Sapiens TripleTOF 5600; instrument model: TripleTOF 5600 Marcilla et al. (2014) Miguel Marcilla 2014-02-03
PXD000269 Minimalistic sample processing PRIDE Schizosaccharomyces pombe (Fission yeast), Homo sapiens , Saccharomyces cerevisiae (Baker's yeast) Q Exactive Dataset with its publication pending Mario Oroshi 2014-01-31
PXD000306 Proteomic identification of rainbow trout seminal plasma proteins PRIDE Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri) instrument model: LTQ; LTQ Nynca et al. (2014) Joanna Nynca 2014-01-31
PXD000196 Shotgun proteomics of nucleoids from irradiated Deinococcus cells PRIDE Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923), Deinococcus radiodurans LTQ Orbitrap; instrument model: LTQ-Orbitrap de la Tour et al. (2013) Jean ARMENGAUD 2014-01-31
PXD000535 CHPP chr 1,8,20 proteome dataset using the HCC cell lines of Hep3B and MHCC97H, instrument is AB5600, part 3 of 3 PRIDE Homo sapiens instrument model: AB 5600 Dataset with its publication pending Zhang Chengpu Zhang Chengpu 2014-01-31
PXD000203 Mouse splenocyte proteome PRIDE Mus musculus LTQ Orbitrap Velos Cao & Robinson (2014) Zhiyun Cao 2014-01-31
PXD000487 A proteome analysis of Bradyrhizobium japonicum USDA 110 grown in minimal medium containing arabinose suggests that oxalate oxidation extends the arabinose degradation branch via glycolaldehyde. PRIDE Bradyrhizobium japonicum (strain USDA 110) LTQ Orbitrap Koch et al. (2014) Ulrich Omasits 2014-01-30
PXD000400 Identification of differentially expressed proteins in direct expressed prostatic secretions of men with organ-confined versus extracapsular prostate cancer. PRIDE Homo sapiens LTQ Orbitrap Kim et al. (2012) Thomas Kislinger 2014-01-30
PXD000713 Plant SILAC: Stable-Isotope Labelling with Amino Acids of Arabidopsis Seedlings for Quantitative Proteomics. PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Lewandowska et al. (2013) Vackar Afzal Prof Angus Lamond 2014-01-30
PXD000022 C2C12 Myoblasts and Myotubes exosomes PRIDE Mus musculus , Bos taurus , Equus caballus LTQ Orbitrap Forterre et al. (2014) Yohann Couté 2014-01-29
PXD000427 Human substantia nigra proteome dataset PRIDE Homo sapiens LTQ Orbitrap Velos Licker et al. (2014) L Virginie 2014-01-29
PXD000149 The potato tuber mitochondrial proteome PRIDE Solanum tuberosum LTQ Orbitrap Salvato et al. (2014) Jay J Thelen 2014-01-29
PXD000221 Proteins from Outer Membrane Vesicules of Pseudomonas syringae Lz4W PRIDE Pseudomonas sp. LTQ Orbitrap Velos Kulkarni, Swamy ChV & Jagannadham (2014) Jagannadham Medicharla V 2014-01-29
PXD000643 Human glomerular cell-derived extracellular mantrix PRIDE Homo sapiens LTQ Orbitrap Velos Byron et al. (2014) Rachel Lennon 2014-01-29
PXD000316 A Saccharomyces Cerevisiae model reveals in vivo functional impairment of the ogden syndrome n-terminal acetyltransferase Naa10-S37p mutant PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap; instrument model: LTQ-Orbitrap Van Damme et al. (2014) Pieter-Jan De Bock 2014-01-29
PXD000412 Human dental calculus LC-MS/MS PRIDE Homo sapiens , Ovis, Bos taurus LTQ Orbitrap Velos; Q Exactive; maXis Dataset with its publication pending Christina Warinner Christina G Warinner 2014-01-29
PXD000492 CDK regulated chicken chromatin PRIDE Gallus gallus LTQ Orbitrap Kustatscher et al. (2014) Georg Kustatscher Juri Rappsilber 2014-01-29
PXD000314 Sequential Phosphoproteomic Enrichment by Complementary Metal-directed Immobilized Metal Ion Affinity Chromatography: Case Study on Kinase Substrate Mapping in Human Lung Cancer Tissue PRIDE Homo sapiens instrument model: TT5600 Tsai et al. (2014) Chia-Feng Tsai 2014-01-29
PXD000711 Comparative proteomics of two life cycle stages of stable isotope-labeled Trypanosoma brucei reveals novel components of the parasite's host adaptation machinery. PRIDE Trypanosoma brucei LTQ Orbitrap; Q Exactive Ericson et al. (2014)Butter et al. (2013) F Butter Matthias Mann 2014-01-28
PXD000421 PAPE - Pre-fractionation assisted phosphoprotein enrichment, a novel approach for phosphoproteomic analysis of green tissues from plants PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Dataset with its publication pending Ines Lassowskat 2014-01-28
PXD000638 Proteomic analysis of the thermophilic methylotroph Bacillus methanolicus MGA3: 50°C versus 37°C PRIDE Bacillus methanolicus LTQ Orbitrap; instrument model: LTQ Orbitrap Müller et al. (2014) Miriam Bortfeld-Miller 2014-01-28
PXD000637 Proteomic analysis of the thermophilic methylotroph Bacillus methanolicus MGA3 PRIDE Bacillus methanolicus LTQ Orbitrap; instrument model: LTQ Orbitrap Müller et al. (2014) Miriam Bortfeld-Miller 2014-01-28
PXD000438 Super-SILAC analysis of human lung primary tumor-derived xenografts LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Elite Zhang et al. (2014) Wen Zhang 2014-01-28
PXD000494 Lactococcus lactis protein turnover PRIDE Lactococcus lactis subsp. lactis (strain IL1403) (Streptococcus lactis) LTQ Orbitrap Dataset with its publication pending Liisa Arike 2014-01-28
PXD000383 QUEST-MS for plasma biomarkers complementing the specificity of PSA test PRIDE Homo sapiens instrument model: LTQ-Orbitrap-Velos Ueda et al. (2013) Koji Ueda 2014-01-28
PXD000674 PeptideShaker PRIDE Homo sapiens Q Exactive Dataset with its publication pending Marc Vaudel Lennart Martens 2014-01-27
PXD000191 Phaeodactylum tricornutum oxidative stress PRIDE Phaeodactylum tricornutum Synapt MS Rosenwasser et al. (2014) Yishai Levin 2014-01-23
PXD000695 In-depth proteomic analyses of ovarian cancer cell line exosomes reveals differential enrichment of functional categories compared to the NCI 60 proteome. PRIDE Homo sapiens Q Exactive Sinha et al. (2014) Thomas Kislinger Thomas Kislinger 2014-01-23
PXD000647 Functional analysis of novel Rab GTPases identified in the proteome of 2 purified Legionella-containing vacuoles from macrophages PRIDE Dictyostelium discoideum (Slime mold), Mus musculus , Legionella pneumophila LTQ Orbitrap Velos Dataset with its publication pending Andreas Otto 2014-01-23
PXD000377 Proteomic analysis of purified protein derivative of mycobacterium tuberculosis PRIDE Mycobacterium tuberculosis H37Rv LTQ Orbitrap Prasad et al. (2013) Akhilesh Pandey 2014-01-23
PXD000456 Human glomerular extracellular matrix analysed by LC-MSMS PRIDE Homo sapiens LTQ Orbitrap Velos Lennon et al. (2014) Rachel Lennon 2014-01-22
PXD000424 Unraveling the Neospora caninum secretome by high-resolution mass spectrometry-based proteomics PRIDE Neospora caninum (Coccidian parasite) LTQ Orbitrap; LTQ Orbitrap Velos Pollo-Oliveira et al. (2013) Henk W.P. van den Toorn 2014-01-20
PXD000198 Differential proteomics-based identification by MALDI-MSMS and nLC-MSMS of biomarkers in serum of patients with glaucoma PRIDE Homo sapiens autoflex; LTQ Orbitrap Elite Dataset with its publication pending Hector Gonzalez-Iglesias 2014-01-17
PXD000531 Human pleural effusion LC-MSMS PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Filip Mundt 2014-01-14
PXD000255 Label-free analysis of EAE vs Sham Spinal cord and PBMCs PRIDE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending L Dagley 2014-01-13
PXD000260 Human triple negative breast cancer tissues PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending Ning Qing Liu 2014-01-13
PXD000658 Global phosphoproteomic profiling reveals distinct signatures in B-cell non-Hodgkin lymphomas PRIDE Homo sapiens LTQ Orbitrap XL Rolland et al. (2014) Damian Fermin 2014-01-09
RPXD000669 Reprocessed: Proteomic and phosphoproteomic data of colorectal cancer tissues and cells for Chromosome-Centric Human Proteome Project PeptideAtlas Homo sapiens LTQ Orbitrap Velos no publication Zhi Sun Eric Deutsch 2013-12-23
RPXD000668 Reprocessed: LC-MS/MS of cultured Mycobacterium tuberculosis in a hypoxia/reaeration timecourse PeptideAtlas Mycobacterium tuberculosis LTQ Orbitrap no publication Zhi Sun Eric Deutsch 2013-12-23
RPXD000667 Reprocessed: Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives PeptideAtlas Mus musculus LTQ Orbitrap Velos no publication Zhi Sun Eric Deutsch 2013-12-23
RPXD000665 Reprocessed: In-depth membrane proteomic study of breast cancer tissues PeptideAtlas Homo sapiens LTQ Orbitrap Velos no publication Zhi Sun Eric Deutsch 2013-12-20
PXD000569 S-nitrosylation in Chlamydomonas reinhardtii PRIDE Chlamydomonas reinhardtii (Chlamydomonas smithii) LTQ Orbitrap Velos Morisse et al. (2014) Christophe MARCHAND 2013-12-19
PXD000367 Proteomic analysis of outer membrane vesicles from the probiotic strain Escherichia coli Nissle 1917 PRIDE Escherichia coli Nissle 1917 LTQ Orbitrap Velos Aguilera et al. (2014) Eliandre de Oliveira 2013-12-19
PXD000405 Ndd1 phosphorylation pattern upon DNA damage PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Dataset with its publication pending Dorothea Anrather 2013-12-19
PXD000533 CHPP chr 1,8,20 proteome dataset using the HCC cell lines of Hep3B and MHCC97H, instrument is Q Exactive, part 2 of 3 PRIDE Homo sapiens quadrupole Dataset with its publication pending Zhang Chengpu Zhang Chengpu 2013-12-19
PXD000623 Quantification of ErbB network proteins in three cell types using complementary approaches identifies cell general and cell type-specific signaling proteins PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Kiel et al. (2014) H. Alexander Ebhardt 2013-12-18
PXD000470 Proteome analysis of Brachypodium distachyon leaf under salt stress and recovery PRIDE Brachypodium distachyon (Purple false brome) (Trachynia distachya) 4800 Proteomics Analyzer Lv et al. (2014) Dong-Wen Lv 2013-12-17
PXD000340 Brachypodium distachyon three leaf stage LC-MSMS PRIDE Brachypodium distachyon (Purple false brome) (Trachynia distachya) LTQ Orbitrap Dataset with its publication pending Dong-Wen Lv 2013-12-17
RPXD000650 Reprocessed: Mycobacterium tuberculosis culture filtrate LC-MS/MS PeptideAtlas Mycobacterium tuberculosis H37Rv LTQ FT no publication Zhi Sun Eric Deutsch 2013-12-16
PXD000529 CHPP chr 1,8,20 proteome dataset using the HCC cell lines of MHCC97H and HCCLM3, instrument is Q Exactive, part 1 of 3 PRIDE Homo sapiens quadrupole Dataset with its publication pending Zhang Chengpu Zhang Chengpu 2013-12-13
PXD000307 Comparison of phenotypically distinct lattice corneal dystrophies reveals similar plaque proteomes and suggests altered proteolytic turnover rates of the transforming growth factor beta-induced protein (TGFBIp) PRIDE Homo sapiens instrument model: TripleTof 5600 AB Sciex Dataset with its publication pending Ebbe Toftgaard Poulsen 2013-12-13
PXD000160 Soybean root tip proteins under flooding with ABA PRIDE Glycine max (Glycine hispida) LTQ Orbitrap; instrument model: LTQ Orbitrap Dataset with its publication pending Yohei Nanjo 2013-12-13
PXD000503 Time-resolved substrate degradomics PRIDE Mus musculus LTQ Orbitrap; LTQ Orbitrap Velos Schlage et al. (2014) Ulrich auf dem Keller 2013-12-13
PXD000234 Proteomic analysis of serum from Chikungunya patients PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Akhilesh Pandey 2013-12-12
PXD000201 Proteomic Change Associated with Flooding Injury of Soybean PRIDE Glycine max (Glycine hispida) LTQ Orbitrap; instrument model: LTQ Orbitrap Dataset with its publication pending Yohei Nanjo 2013-12-11
PXD000538 A novel pulse-chase SILAC strategy measures changes in protein decay and synthesis rates induced by perturbation of proteostasis with an Hsp90 inhibitor. PRIDE Homo sapiens LTQ Orbitrap Velos Fierro-Monti et al. (2013) Manfredo Quadroni 2013-12-10
PXD000537 Dynamic impacts of the inhibition of the molecular chaperone Hsp90 on the T-cell proteome have implications for anti-cancer therapy. PRIDE Homo sapiens LTQ Orbitrap Velos Fierro-Monti et al. (2013) Manfredo Quadroni 2013-12-10
PXD000375 Global analysis of Cdc14 dephosphorylation sites reveals essential regulatory role in mitosis and cytokinesis PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap; instrument model: LTQ Orbitrap Kao et al. (2014) Chia-Feng Tsai 2013-12-10
PXD000312 Mercury Uniquely Alters B-Cell Protein Phosphorylation Profiles PRIDE Mus musculus instrument model: LTQ; LTQ Dataset with its publication pending Nicholas Carruthers 2013-12-10
PXD000622 Biomarker discovery for lung nodules PeptideAtlas Homo sapiens QTRAP 5500 Li et al., submitted Lik Wee Lee Paul Kearney 2013-12-05
PXD000303 Evaluation of drift time specific collision energies PRIDE Homo sapiens Q Exactive; Synapt MS Dataset with its publication pending Ute Distler 2013-12-05
PXD000584 Shotgun Imaging Analyzer Gastric Cancer PRIDE Homo sapiens LTQ Orbitrap Velos Aquino et al. (2014) Paulo Carvalho 2013-12-05
PXD000602 UPS1 and UPS2 proteins diluted in E. coli PRIDE Escherichia coli LTQ Velos; LTQ; LTQ Orbitrap Velos Krey et al. (2014) Peter Gillespie 2013-12-05
PXD000578 Mass spectrometry-based quantitative proteomics of whole cell lysate from breast cancer cell line MCF7 spiked with 57 protein standards PRIDE Homo Sapiens LTQ Orbitrap Dataset with its publication pending AnnSofi Sandberg 2013-12-03
PXD000614 Investigation of proximal phosphorylation and lysine acetylation crosstalk PeptideAtlas Rattus norvegicus QTRAP 5500 no publication Benjamin Parker David E. James 2013-12-02
PXD000455 Drosophila melanogaster proteome dataset with high coverage of the genome based on the LC-MS/MS platform PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap; instrument model: LTQ Orbitrap Xing et al. (2014) Zhang Chengpu 2013-12-02
PXD000242 Iloprost (2/5 nM) stimulated Platelets PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Florian Beck 2013-12-02
PXD000451 Phosphoproteomic analysis of platelets activated by pro-thrombotic oxidized phospholipids and thrombin PRIDE Homo sapiens LTQ Orbitrap Zimman et al. (2014) Bjoern Titz 2013-12-02
PXD000192 Developing Soybean Seed Lysine-N-epsilon-acetylome PRIDE Glycine max (Glycine hispida) LTQ Orbitrap Smith-Hammond et al. (2014) Colin Smith-Hammond 2013-12-02
PXD000131 Integrative genome, transcriptome and proteome analysis of rat livers from two different genetic backgrounds PRIDE Rattus norvegicus LTQ Orbitrap Velos; TripleTOF 5600 Low et al. (2013) Teck Yew Low 2013-11-29
PXD000545 Photosynthetic Megacomplex in Synechosystis 6803 PRIDE Synechocystis sp. PCC 6803 LTQ Orbitrap Dataset with its publication pending Hao Zhang 2013-11-29
PXD000252 Granzyme M targets topoisomerase II alpha to trigger cell cycle arrest and caspase-dependent apoptosis in cancer cells PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Dataset with its publication pending Pieter-Jan De Bock 2013-11-27
PXD000210 Proteome analysis by charge state-selective separation of peptides: a multidimensional approach PRIDE Mus musculus , Mus musculus (house mouse) LTQ Orbitrap; instrument model: LTQ-Orbitrap; instrument model: LTQ Orbitrap Dataset with its publication pending Pieter-Jan De Bock 2013-11-27
PXD000152 Conservation of the extended substrate specificity profiles among homologous granzymes across species PRIDE Mus musculus instrument model: QToF Global; Waters instrument model Plasman et al. (2013) Pieter-Jan De Bock 2013-11-27
PXD000563 Integrated Chromosome 19 Transcriptomic and Proteomic Datasets Derived from Six Glioma-Derived Cancer Stem Cell Lines PRIDE Homo sapiens LTQ Orbitrap Elite Lichti et al. (2014) HL Liu 2013-11-27
PXD000243 Telomeric protein composition deriving from q-TIP analysis comparing Hela supertelomerase cells, Hela TRF2 knockdown cells or Hela POT1 knockdown cells with Hela control cells, proteomes by 2D-LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Elite Dataset with its publication pending Romain Hamelin 2013-11-26
PXD000454 Drosophila melanogaster iTRAQ HCD dataset PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap; instrument model: LTQ Orbitrap Xing et al. (2014) Zhang Chengpu 2013-11-25
PXD000596 Probing the complementarity of FAIMS and strong cation exchange chromatography in shotgun proteomics PRIDE Homo sapiens LTQ Orbitrap Velos Creese et al. (2013) Andrew Creese 2013-11-22
PXD000327 Quantitative proteomic profiling reveals novel region-specific markers in the adult mouse brain PRIDE Mus musculus LTQ Orbitrap Velos Dagley et al. (2014) L Dagley 2013-11-22
PXD000483 Mycobacterium tuberculosis under starvation PRIDE Mycobacterium tuberculosis H37Rv LTQ Orbitrap Cortes et al. (2013) Olga Schubert 2013-11-22
PXD000238 Phosphoproteomic Analysis of Lethal Castration Resistant Prostate Cancer Reveals Patient but not Metastatic Site Heterogeneity of Tyrosine Kinase Activation PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending Nicholas Graham 2013-11-21
PXD000273 Quantitative proteomics reveals the role of arginine phosphorylation in bacterial stress response PRIDE Bacillus subtilis subsp. subtilis str. 168 LTQ Orbitrap Velos; Q Exactive Schmidt et al. (2014) Andreas Schmidt 2013-11-21
PXD000489 A pair of centromeric proteins mediates reproductive isolation in Drosophila species PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap Thomae et al. (2013) Andreas Thomae 2013-11-20
PXD000387 LC-MS/MS of gingiva and Periodontal ligaments PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Dataset with its publication pending Kari Green 2013-11-18
PXD000331 Critical assessment of proteome-wide label-free absolute abundance estimation strategies PRIDE Homo sapiens , Mycoplasma pneumoniae, Leptospira interrogans, Drosophila melanogaster (Fruit fly) LTQ Orbitrap Velos Ahrné et al. (2013) Alexander Schmidt 2013-11-15
PXD000341 Site-specific quantitation of TCR-induced phosphorylation in Jurkat T cell lines PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending Mogjib SALEK 2013-11-15
PXD000478 Transcriptome and proteome quantification of a tumor model provides novel insights into post-transcriptional gene regulation PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap Velos Jüschke et al. (2013) Christoph Jüschke 2013-11-14
PXD000575 Mouse Acrosomal Matrix LC-MS/MS PRIDE Mus musculus LTQ XL Guyonnet et al. (2012) Dr Gail A Cornwall 2013-11-14
PXD000461 Identification of telomere-binding proteins by enChIP-MS PRIDE Mus musculus LTQ Orbitrap Velos; instrument model: LTQ Orbitrap velos Fujita et al. (2013) Kazunobu Saito 2013-11-12
PXD000429 The Aeromonas salmonicida subsp. salmonicida exoproteome. PRIDE Aeromonas salmonicida salmonicida instrument model: ESI-LTQ-Orbitrap Vanden Bergh et al. (2013) Cedric Simillion 2013-11-11
PXD000360 3xMBT pull-down from wild-type and Rkm1 knock-out yeast PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Elite Dataset with its publication pending Scott Carlson 2013-11-11
PXD000361 3xMBT protein pull-down PRIDE Homo sapiens LTQ Orbitrap Velos; Q Exactive; LTQ Orbitrap Elite Moore et al. (2013) Scott Carlson 2013-11-11
PXD000280 Arabidopsis thaliana Cytochrome c Novel Partners Identification by LTQ PRIDE Arabidopsis thaliana (Mouse-ear cress) instrument model: LTQ; LTQ Dataset with its publication pending Jonathan Martinez Fabregas 2013-11-11
PXD000440 Qualitatively Different T Cell Phenotypic Responses to IL-2 versus IL-15 are Unified by Identical Dependences on Receptor Signal Strength and Duration PRIDE Homo sapiens instrument model: Orbitrap Elite CID/HCD Arneja et al. (2014) Hannah Johnson 2013-11-07
PXD000355 Proteomic identification of rainbow trout sperm proteins PRIDE Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri) instrument model: LTQ; LTQ Nynca et al. (2014) Joanna Nynca 2013-11-05
PXD000423 Resolution of the type material of the Asian elephant, Elephas maximus (Proboscidea: Elephantidae) Linnaeus, 1758 PRIDE Loxodonta africana (African elephant) Q Exactive Dataset with its publication pending Enrico Cappellini 2013-11-04
PXD000553 Polysome profiling reveals translational control of gene expression in the human malaria parasite Plasmodium falciparum PRIDE Plasmodium falciparum LTQ Bunnik et al. (2013) Anita Saraf 2013-10-31
PXD000162 Hypoxia-induced Changes in the Secretome of Human Preadipocytes and Adipocytes PRIDE Homo sapiens 4800 Proteomics Analyzer; instrument model: absciex 4800; instrument model: IonTrap XCT Ultra Rosenow et al. (2013) Jean-Paul Noben 2013-10-29
PXD000053 Lotus japonicus phosphopeptide PRIDE Lotus japonicus LTQ Orbitrap; instrument model: LTQ Orbitrap Ino et al. (2014) Yoko Ino 2013-10-29
PXD000426 Asn3 mass accuracy jurkat proteome PRIDE Homo sapiens instrument model: LTQ-Orbitrap Velos; LTQ Orbitrap Velos Staes et al. (2013) An Staes 2013-10-22
PXD000403 Sphingomonas wittichii RW1 shotgun proteomics PRIDE Sphingomonas wittichii LTQ Orbitrap; instrument model: LTQ Orbitrap Hartmann & Armengaud (2014) Jean ARMENGAUD 2013-10-22
PXD000524 Modified cytosine binding proteins PRIDE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending David Oxley 2013-10-21
PXD000345 Proteomic analysis of the global response of an arthropod Wolbachia symbiont to doxycycline-induced stress PRIDE Wolbachia sp. wMelPop LTQ Orbitrap Velos; instrument model: LTQ Orbitrap velos; instrument model: Thermo Orbitrap Velos Dataset with its publication pending Stuart Armstrong 2013-10-21
PXD000378 Functional analysis of the rodent tau mutation in a marine unicellular alga PRIDE Ostreococcus tauri instrument model: OrbitrapXL; instrument model: IonTrap XCT Ultra Dataset with its publication pending Thierry Le Bihan 2013-10-18
PXD000246 Human breast cancer cell line LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Jacob Kennedy 2013-10-18
PXD000308 Shotgun label-free quantitative proteomics of water-deficit stressed mid-mature peanut (Arachis hypogaea L.) seed PRIDE Arachis hypogaea LTQ Dataset with its publication pending Masoud zabet-moghaddam 2013-10-17
PXD000352 Proteomic of spearmint (Mentha spicata L.) leaf trichomes PRIDE Mentha spicata 4800 Proteomics Analyzer Champagne & Boutry (2013) Antoine Champagne 2013-10-17
PXD000415 Human Hippo pathway , LC-MSMS PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending Xu Li 2013-10-17
PXD000464 LC-MS data of peptides from p53 isolated by custom immunoaffinity chromatography PRIDE Cercopithecus aethiops (Green monkey) LTQ Orbitrap; instrument model: LTQ Orbitrap Dataset with its publication pending David Perlman 2013-10-17
PXD000506 Host-centric proteomics of stool, part 2 of 2 PRIDE Homo sapiens LTQ Orbitrap Velos Lichtman et al. (2013) Joshua S. Lichtman 2013-10-16
PXD000240 Host-centric proteomics of stool PRIDE Homo sapiens , Mus musculus LTQ Orbitrap Velos Lichtman et al. (2013) Joshua Lichtman 2013-10-16
PXD000346 Protein Expression Profile of PBMC from CA and OP patient samples PRIDE Homo sapiens TripleTOF 5600 Dataset with its publication pending Minlin Ou 2013-10-11
PXD000508 Ultra high resolution linear ion trap Orbitrap mass spectrometer (Orbitrap Elite) facilitates top down LC MS/MS and versatile peptide fragmentation modes PRIDE Homo sapiens LTQ Orbitrap Elite Michalski et al. (2012) Mario Oroshi 2013-10-10
PXD000263 Proteome analysis of the MO3.13 cell line from human oligodendrocytes PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Iwata et al. (2013) Daniel Martins-de-Souza 2013-10-09
PXD000488 Comparative Proteomic profiling of the rostral band of LAL muscle from SMA mice and litter mate controls PRIDE Mus musculus instrument model: LTQ Orbitrap XL; LTQ Orbitrap XL Dataset with its publication pending Douglas Lamont 2013-10-09
PXD000500 Arabidopsis mitochondrial proteome during a diurnal cycle PRIDE Arabidopsis thaliana (Mouse-ear cress) instrument model: IonTrap XCT Ultra Lee, Eubel & Millar (2010) Chun Pong Lee 2013-10-09
PXD000393 Multi-omic analysis of Yersinia response to temperature shift PRIDE Yersinia pseudotuberculosis, Yersinia pestis LTQ; LTQ Orbitrap Velos Dataset with its publication pending Matthew Monroe 2013-10-07
PXD000392 Salmonella growth condition adaptation PRIDE Salmonella typhimurium (strain 14028s / SGSC 2262) LTQ Orbitrap Dataset with its publication pending Matthew Monroe 2013-10-07
PXD000391 Salmonella secretome analysis PRIDE Salmonella typhimurium (strain 14028s / SGSC 2262) LTQ Orbitrap Dataset with its publication pending Matthew Monroe 2013-10-07
PXD000390 Systems analysis of Salmonella regulatory mutants PRIDE Salmonella typhimurium (strain 14028s / SGSC 2262) LTQ Orbitrap Dataset with its publication pending Matthew Monroe 2013-10-07
PXD000389 Time course response of macrophages to Salmonella infection PRIDE Salmonella typhimurium (strain 14028s / SGSC 2262) LTQ Orbitrap Dataset with its publication pending Matthew Monroe 2013-10-07
PXD000388 Subcellular proteomic survey of Salmonella PRIDE Salmonella typhimurium (strain 14028s / SGSC 2262) LTQ Orbitrap Brown et al. (2012) Matthew Monroe 2013-10-07
PXD000324 Signatures for Mass Spectrometry Data Quality, part 5 of 5 PRIDE Shewanella oneidensis (strain MR-1) LTQ Orbitrap Velos Amidan et al. (2014) Matthew Monroe 2013-10-04
PXD000323 Signatures for Mass Spectrometry Data Quality, part 4 of 5 PRIDE Shewanella oneidensis (strain MR-1) LTQ Orbitrap Velos Amidan et al. (2014) Matthew Monroe 2013-10-04
PXD000322 Signatures for Mass Spectrometry Data Quality, part 3 of 5 PRIDE Shewanella oneidensis (strain MR-1) Exactive; Q Exactive Amidan et al. (2014) Matthew Monroe 2013-10-04
PXD000321 Signatures for Mass Spectrometry Data Quality, part 2 of 5 PRIDE Shewanella oneidensis (strain MR-1) LTQ Orbitrap Amidan et al. (2014) Matthew Monroe 2013-10-03
PXD000320 Signatures for Mass Spectrometry Data Quality, part 1 of 5 PRIDE Shewanella oneidensis (strain MR-1) LTQ Velos; LTQ; LTQ XL ETD Amidan et al. (2014) Matthew Monroe 2013-10-03
PXD000163 Anti-FLAG-affinity purification of Umbrea associated factors PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap Dataset with its publication pending Andreas Thomae 2013-10-03
PXD000399 Quantitative LC-MS/MS Analysis of Apical Membrane Proteome of mpkCCD Cells PRIDE Mus musculus LTQ Orbitrap Loo et al. (2013) Ming-Jiun Yu 2013-10-02
PXD000187 Extra-cellular proteins from Lactic Acid Bacteria PRIDE Firmicutes (gram-positive bacteria) instrument model: IonTrap XCT Ultra Butler È et al. (2013) Eile Butler 2013-10-01
PXD000419 Comparative Proteomics in Primates PRIDE Macaca mulatta (Rhesus macaque), Homo sapiens , Pan troglodytes LTQ Orbitrap Velos Khan et al. (2013) Zia Khan 2013-10-01
PXD000065 HiRIEF deep proteomics of A431 human vulvar cancer cell line and N2A mouse neuroblastoma cell line PRIDE Homo Sapiens , Mus musculus LTQ Orbitrap Branca et al. (2014) Rui Branca 2013-09-27
PXD000385 Amniocyte lysate proteome PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Cho et al. (2013) E Diamandis 2013-09-27
PXD000343 SWATH analysis of 1433B_HUMAN affinity purifications from HEK293 cells after time course treatment with IGF1 PRIDE Homo sapiens TripleTOF 5600 Collins et al. (2013) Ben Collins 2013-09-25
PXD000431 Identifcation of Adiponectin and Evidence for Post-Translational Modifications in the Bottlenose Dolphin (Tursiops truncatus) PRIDE Tursiops truncatus (Atlantic bottle-nosed dolphin) (Delphinus truncatus) TripleTOF 5600 Dataset with its publication pending Benjamin Neely 2013-09-23
PXD000444 OOP and PreP peptide cleavage products by LC-MS PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Dataset with its publication pending Rui Branca 2013-09-18
PXD000386 Extracellular Matrix Proteome PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending Christian Niehage 2013-09-12
PXD000168 mouse microglia using High-pH fractionation and LC-MS/MS PRIDE Mus musculus Q Exactive Dataset with its publication pending Dohyun Han 2013-09-11
PXD000105 An extensive proteome map of tomato (Solanum lycopersicum) fruit pericarp PRIDE Solanum lycopersicum (Lycopersicon esculentum) LTQ Xu et al. (2013) Mathilde Causse 2013-09-11
PXD000328 Protein synthesis rate is the predominant regulator of protein expression during differentiation PRIDE Homo sapiens , Mus musculus LTQ Orbitrap; LTQ Orbitrap Velos Kristensen, Gsponer & Foster (2013) Anders Kristensen 2013-09-10
PXD000084 Honey Bee Proteome Atlas PRIDE Apis mellifera ligustica (Common honeybee) (Italian honeybee) LTQ Orbitrap: MS Chan et al. (2013) Queenie Chan 2013-09-10
PXD000420 Human alveolar bone and dental cementum LC-MSMS PRIDE Homo sapiens LTQ FT Salmon et al. (2013) Cristiane R. Salmon 2013-09-09
PXD000417 Arabidopsis cell LC-MSMS PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap; instrument model: LTQ Orbitrap Sun et al. (2013) Takeo Sato 2013-09-06
PXD000449 Chr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. CCD18 Cell line. PRIDE Homo sapiens dissociation method; collision gas; collision gas; dissociation method Segura et al. (2013) Alberto Medina-Aunon 2013-09-06
PXD000023 EHEC O157:H7 Sakai vs. TW14359: Secreted and Cytosolic iTRAQ; sepD secretome analysis of TW14359 PRIDE Escherichia coli O157:H7 (strain TW14359 / EHEC) LTQ Orbitrap; instrument model: LTQ-Orbitrap Morgan et al. (2013) Jason Morgan 2013-09-05
PXD000447 Chr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. Ramos Cell line. PRIDE Homo sapiens collision gas; collision gas Segura et al. (2013) Alberto Medina-Aunon 2013-09-05
PXD000443 Chr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. Jurkat Cell line. PRIDE Homo Sapiens, Homo sapiens collision gas; dissociation method Segura et al. (2013) Alberto Medina-Aunon 2013-09-05
PXD000442 Chr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. MCF7 Cell line. PRIDE Homo Sapiens, Homo sapiens dissociation method; dissociation method; collision gas; collision gas; dissociation method Segura et al. (2013) Alberto Medina-Aunon 2013-09-04
PXD000359 SILAC-based proteomics of human primary endothelial cell morphogenesis unveils tumor angiogenic markers PRIDE Homo sapiens LTQ Orbitrap Zanivan et al. (2013) Sara Zanivan 2013-09-04
PXD000182 Arabidopsis nanodomain-delimited ABA signaling pathway regulates the anion channel SLAH3 PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Demir et al. (2013) Waltraud Schulze 2013-09-02
PXD000430 in Vitro Brominated Peptides Spiked into U373 cell digestion PRIDE Homo sapiens LTQ Orbitrap Elite Dataset with its publication pending HL Liu 2013-08-28
PXD000052 SLP76 interactome in resting and activated primary mast cells PRIDE Mus musculus LTQ Orbitrap Velos Bounab et al. (2013) Hesse Anne-Marie 2013-08-28
PXD000067 U1 Small Nuclear Ribonucleoprotein Complex and RNA Splicing Alterations in Alzheimer Disease PRIDE Homo sapiens LTQ Orbitrap Bai et al. (2013) Junmin Peng 2013-08-28
PXD000035 Surface Proteins of Listeria monocytogenes PRIDE Listeria monocytogenes MALDI Synapt HDMS; instrument model: Waters Synapt HDMS QTOF Zhang et al. (2013) Min Lin 2013-08-27
PXD000278 Quantitative proteomic analysis of breast cancer tissues PRIDE Homo sapiens LTQ Orbitrap Liu et al. (2013) Ning Qing Liu 2013-08-23
PXD000418 Defining, Comparing, and Improving iTRAQ Quantification in Mass Spectrometry Proteomics Data PRIDE Homo sapiens 4800 Proteomics Analyzer; 6520 Quadrupole Time-of-Flight LC/MS; LTQ Orbitrap Velos Hultin-Rosenberg et al. (2013) Henrik J Johansson 2013-08-16
PXD000073 Terminal alkynes react with active-site cysteine nucleophiles PRIDE Mus musculus instrument model: LTQ Orbitrap Velos; instrument model: LTQ Orbitrap Discovery; LTQ Orbitrap Discovery; LTQ Orbitrap Velos Ekkebus et al. (2013) Patrick Wijten 2013-08-14
PXD000264 Temperature-dependent Proteome Study of Thermoanaerobacter tengcongensis PRIDE Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Caldanaerobacter subterraneus subsp. tengcongensis) instrument model: LTQ Orbitrap Velos; LTQ Orbitrap; LTQ Orbitrap Velos; instrument model: LTQ Orbitrap Chen et al. (2013) Bo Wen 2013-08-13
PXD000411 Proteomics of protein secretion by Aggregatibacter actinomycetemcomitans PRIDE Aggregatibacter actinomycetemcomitans D7S-1 instrument model: Bruker HCT ultra ETDII; Bruker Daltonics HCT Series Zijnge, Kieselbach & Oscarsson (2012) Thomas Kieselbach 2013-08-13
PXD000197 AKT2 interacting proteins_ MBP- and MAP-TAPs PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Bottermann et al. (2013) Katharina Bottermann 2013-08-13
PXD000030 Annexin A1 interacting proteins in chronic myeloid leukemia KCL22 cells PRIDE Homo sapiens , Homo sapiens instrument model: IonTrap XCT Ultra Colavita et al. (2013) Irene Colavita 2013-08-13
PXD000335 VHL Cancer PRIDE Homo sapiens instrument model: LTQFT Dataset with its publication pending Laszlo Prokai 2013-08-12
PXD000258 Proteomic response of Alicycliphilus denitrificans strain BC towards the different electron acceptors chlorate, nitrate and oxygen. PRIDE Alicycliphilus denitrificans (strain JCM 14587 / BC) LTQ Orbitrap Oosterkamp et al. (2013) Sjef Boeren 2013-08-12
PXD000409 System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top Orbitrap PRIDE Saccharomyces cerevisiae (Baker's yeast) Q Exactive Nagaraj et al. (2012) Mario Oroshi 2013-08-09
PXD000292 ChaFRADIC: A novel SCX-based approach for N-terminal Enrichment PRIDE Saccharomyces cerevisiae (Baker's yeast) Q Exactive Dataset with its publication pending Saskia Venne 2013-08-09
PXD000189 Searching for Pseudomonas aeruginosa MagD partners PRIDE Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) instrument model: LTQ-Orbitrap Velos pro; LTQ Orbitrap Velos Robert-Genthon et al. (2013) Yohann Couté 2013-08-09
PXD000247 Proteomic analysis of the testa from developing soybean seeds PRIDE Glycine max (Glycine hispida) LTQ Orbitrap; instrument model: LTQ Orbitrap Miernyk & Johnston (2013) Jan Miernyk 2013-08-09
PXD000047 Endogenous Purification Reveals GREB1 as a Key Estrogen Receptor Regulatory Factor PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Mohammed et al. (2013) Hisham Mohammed 2013-08-09
PXD000254 DMSO enhances electrospray response boosting sensitivity of proteomic experiments PRIDE Homo sapiens LTQ Orbitrap; LTQ Orbitrap Velos; LTQ Orbitrap Elite Hahne et al. (2013) Hannes Hahne 2013-08-07
PXD000313 Quantitative proteomics study on rice embryo during embryogenesis by using isobaric tags for relative and absolute quantification (iTRAQ) PRIDE Oryza sativa Q Exactive Dataset with its publication pending Jin Zi 2013-08-06
PXD000095 Determination of Phosphorylation Sites in the DivIVA Protein of Streptomyces coelicolor by Targeted LC-MS/MS PRIDE Streptomyces coelicolor LTQ Orbitrap; instrument model: LTQ Orbitrap Saalbach et al. (2013) Gerhard Saalbach 2013-08-05
PXD000174 CaMKII Cardiac Phosphoproteome PRIDE Mus musculus LTQ Orbitrap Velos Scholten et al. (2013) Arjen Scholten 2013-08-02
PXD000064 The conserved set of host proteins incorporated into HIV-1 virions suggests a common egress pathway in multiple cell types PRIDE Homo sapiens , Human immunodeficiency virus 1 LCQ Classic; Applied Biosystems instrument model Linde et al. (2013) Ceereena Ubaida Mohien 2013-08-02
PXD000265 Oryza sativa egg, sperm, callus, pollen and seedling proteome PRIDE Oryza sativa instrument model: LTQ Orbitrap XL; LTQ Orbitrap XL Abiko et al. (2013) Masato Taoka 2013-08-02
PXD000342 SILAC dat for two TERRA pull-down experiments using different salt conditions (1 M NaCl and 250 mM NaCl) PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending F Butter 2013-08-02
PXD000054 Proteogenomic analysis of Helicobacter pylori strain 26695 PRIDE Helicobacter pylori 26695 LTQ Orbitrap; instrument model: LTQ-Orbitrap Müller et al. (2013) Stephan Mueller 2013-08-01
PXD000373 KLK assay for PCa plasma samples (Nilsson, et al.) PeptideAtlas Homo sapiens TSQ Vantage Nilsson et al. (2013) Akos Vegvari Gyorgy Marko-Varga 2013-07-26
PXD000372 Bovine mastitis host-repsonse (Bislev et al.) PeptideAtlas Bos taurus QTRAP 5500 Bislev et al. (2012) Stine Bislev Emoke Bendixen 2013-07-26
PXD000371 Quantif. nucleoporins in HeLa nuclear env. extracts (Ori, et al.) PeptideAtlas Homo sapiens TSQ Vantage Ori et al. (2013) Alessandro Ori Martin Beck 2013-07-26
PXD000370 Quantification of human nuclear pore complex composition in five cell lines (Ori, et al.) PeptideAtlas Homo sapiens TSQ Vantage Ori et al. (2013) Alessandro Ori Martin Beck 2013-07-26
PXD000369 pre-60S particles at different maturation stages (Altvater, et al.) PeptideAtlas Saccharomyces cerevisiae QTRAP 5500 Altvater et al. (2012) Andre Melnik Paola Picotti 2013-07-26
PXD000225 Phosphoproteomics study on protein kinase C delta induced cell death PRIDE Homo sapiens LTQ Orbitrap Xia et al. (2013) Li Xia 2013-07-26
PXD000132 Analysis of lung cancer cell lines GLC1 and GLC1 M13 PRIDE Homo sapiens instrument model: ultraflex TOF/TOF; Bruker Daltonics flex series Poschmann et al. (2013) Gereon Poschmann 2013-07-26
PXD000148 Quantitative proteomics profiling of protein kinase A substrates - Jurkat clone E6.1 PRIDE Homo sapiens LTQ Orbitrap Velos Giansanti et al. (2013) Piero Giansanti 2013-07-25
PXD000283 Comparison and applications of label-free absolute proteome quantification methods on Escherichia coli PRIDE Escherichia coli LTQ Orbitrap; instrument model: LTQ Orbitrap Arike et al. (2012) Liisa Arike 2013-07-24
PXD000190 Quantitative Proteomics of miR-148a in gastric cancer cells PRIDE Homo sapiens instrument model: synapt G2 HDMS; MALDI Synapt G2 HDMS; instrument model: Q-TOF Hu et al. (2013) Chia-Wei Hu 2013-07-24
PXD000281 Retinoic acid receptor alpha is associated with tamoxifen resistance in breast cancer PRIDE Homo sapiens Agilent instrument model; 4800 Proteomics Analyzer; LTQ Orbitrap Johansson et al. (2013) Henrik J Johansson 2013-07-24
PXD000050 The human islet of Langerhans proteome database PRIDE Homo sapiens instrument model: Thermo Scientific LTQ Orbitrap Velos; LTQ Orbitrap Velos Dataset with its publication pending Domitille Schvartz 2013-07-23
PXD000271 Mouse gastrointestinal system mucus nLC-MS/MS PRIDE Mus musculus LTQ Orbitrap Rodríguez-Piñeiro et al. (2013) Ana M. Rodriguez-Pineiro 2013-07-23
PXD000262 Characterisation of PRR11 PRIDE Homo sapiens LTQ Orbitrap Larance et al. (2013) Vackar Afzal 2013-07-23
PXD000126 Prototheca zopfii genotype proteomics analysis PRIDE Prototheca zopfii, Chlorella-like algae instrument model: MALDI UltraFlex; Bruker Daltonics flex series Murugaiyan et al. (2013) Jayaseelan Murugaiyan 2013-07-22
PXD000213 Pandoravirus proteome PRIDE unidentified instrument model: LTQ-Orbitrap Velos pro; LTQ Orbitrap Velos Philippe et al. (2013) Yohann Couté 2013-07-19
PXD000147 Proteomics Analysis of Burkholderia Kirkii PRIDE Candidatus Burkholderia kirkii LTQ Orbitrap XL Carlier et al. (2013) Ulrich Omasits 2013-07-18
PXD000153 Complete Expressed Proteome of Bartonella Henselae PRIDE Bartonella henselae (strain ATCC 49882 / Houston 1) (Rochalimaea henselae) LTQ Orbitrap; LTQ FT Omasits et al. (2013) Ulrich Omasits 2013-07-18
PXD000270 Proteome of Burkholderia cenocepacia H111 in aerobic and micro-oxia condition PRIDE Burkholderia cenocepacia H111 LTQ Orbitrap Dataset with its publication pending Ulrich Omasits 2013-07-18
PXD000183 Human kidney primary proximal tubule cell LC-MSMS PRIDE Homo sapiens LTQ Orbitrap Konvalinka et al. (2013) Ana Konvalinka 2013-07-18
PXD000194 Proteomics analysis of human pericardial fluid PRIDE Homo sapiens LTQ Orbitrap Velos Xiang et al. (2013) fei xiang 2013-07-09
PXD000224 Protein extraction in recalcitrant plant species PRIDE Vitis vinifera , Quercus suber (Cork oak), Pinus pinaster (Maritime pine), Pisolithus tinctorius Marx 270 4700 Proteomics Analyzer Sebastiana et al. (2013) Andreia Figueiredo 2013-07-09
PXD000107 Pseudomonas aeruginosa inner membrane proteome PRIDE Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) instrument model: LTQ-Orbitrap Velos pro; LTQ Orbitrap Velos Casabona et al. (2013) Yohann Couté 2013-07-04
PXD000049 Comparative phosphoproteome of Trypanosoma brucei bloodstream & procyclic form PRIDE Trypanosoma brucei LTQ Orbitrap Velos Urbaniak, Martin & Ferguson (2013) Michael Urbaniak 2013-07-03
PXD000125 Comprehensive identification of proteins from MALDI imaging PRIDE Homo sapiens LTQ Orbitrap; LTQ Orbitrap Elite Maier et al. (2013) Stefan K Maier 2013-07-03
PXD000317 Rice embryogenesis proteins quantification (Zi) PeptideAtlas Oryza sativa QTRAP 5500 Zi et al. (2013) Jin Zi Siqi Liu 2013-07-02
PXD000309 Proteomic portrait of human breast cancer progression identifies novel prognostic markers PRIDE Homo sapiens LTQ Orbitrap Geiger et al. (2012) Mario Oroshi 2013-07-02
PXD000235 bHLH Transcription Factors that Facilitate K+ Uptake During Stomatal Opening are Repressed by Abscisic Acid through Phosphorylation PRIDE Arabidopsis thaliana (thale cress) instrument model: LTQ; LTQ Takahashi et al. (2013) Yohei Takahashi 2013-06-28
PXD000231 Mouse Cochlea Sensory Epithelium Proteome PRIDE Mus musculus LTQ Orbitrap Darville & Sokolowski (2013) Lancia Darville 2013-06-28
PXD000045 LC-MS/MS of cultured Mycobacterium tuberculosis in a hypoxia/reaeration timecourse PRIDE Mycobacterium tuberculosis LTQ Orbitrap; instrument model: LTQ-Orbitrap Galagan et al. (2013) Gingras Olivier 2013-06-25
PXD000069 Shotgun proteomics of Ophrys orchid flowers PRIDE Ophrys exaltata subsp. archipelagi (Ophrys arachnitiformis subsp. archipelagi), Ophrys garganica, Ophrys sphegodes (Early spider orchid) (Arachnites aranifera) LTQ; instrument model: LTQ_1 FGCZ Sedeek et al. (2013) Philipp Schlueter 2013-06-24
PXD000121 Proteomic Profiling of the Mitochondrial Inner Membrane of Rat Renal Proximal Convoluted Tubules PRIDE Rattus norvegicus LTQ Freund, Prenni & Curthoys (2013) Dana Freund 2013-06-20
PXD000284 Comparative proteomic analysis of human bile from malignant and nonmalignant biliary stenosis PRIDE Homo sapiens LTQ Orbitrap Farina et al. (2014) Annarita Farina 2013-06-20
PXD000188 Profiling protein kinases and other ATP binding proteins in Arabidopsis using acyl-ATP probes PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Villamor et al. (2013) Thomas Colby 2013-06-19
PXD000290 Human liver HALT-C (Qin et al.) PeptideAtlas Homo sapiens 6460 Triple Quadrupole LC/MS Qin et al. (2012) Shizhen Qin Leroy Hood 2013-06-18
PXD000151 Adaptation of a commonly used, chemically defined medium for human embryonic stem cells to stable isotope labeling with amino acids in cell culture (SILAC) PRIDE Homo sapiens Q Exactive Liberski et al. (2013) Johannes Graumann 2013-06-17
PXD000208 AP-MS analysis of human histone deacetylase interactions in CEM-T cells PRIDE Homo sapiens LTQ Orbitrap Velos Joshi et al. (2013) T Greco 2013-06-14
PXD000276 Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells PRIDE Schizosaccharomyces pombe (Fission yeast) LTQ Orbitrap; instrument model: LTQ Orbitrap Marguerat et al. (2012) Alexander Schmidt 2013-06-06
PXD000239 Characterization of the novel broad-spectrum kinase inhibitor CTx-0294885 as an affinity reagent for mass spectrometry-based kinome profiling PRIDE Homo sapiens LTQ Orbitrap Velos Zhang et al. (2013) Luxi Zhang 2013-06-05
PXD000076 Shortgun Proteomic analysis of two Bartonella quintana strains PRIDE Bartonella quintana JK 31, Bartonella quintana (Rochalimaea quintana) instrument model: QSTAR-XL; QSTAR XL Fabietti et al. (2013) Shibu Krishnan 2013-06-03
PXD000250 Chlorella vulgaris UTEX 395 Shotgun Proteomic Time Course Analysis Under Nitrogen Deprivation PRIDE Chlorella vulgaris (Green alga) LTQ Orbitrap Velos Guarnieri et al. (2013) Michael Guarnieri 2013-06-03
PXD000230 Membrane enriched proteome of transfected SW480 cells PRIDE Homo sapiens LTQ Cantor et al. (2013) David Cantor 2013-05-30
PXD000195 Arabidopsis root hair protoplasts PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Lan et al. (2013) Ping Lan 2013-05-28
PXD000129 Drosophila immune response PRIDE Drosophila melanogaster (Fruit fly) instrument model: LTQ; instrument model: LTQ FT Ultra; LTQ; LTQ FT Ultra Fukuyama et al. (2013) Yann Verdier 2013-05-22
PXD000236 Dynamic Msn2 phosphorylation changes in yeast (Sunnaker, et al.) PeptideAtlas Saccharomyces cerevisiae TSQ Vantage Sunnåker et al. (2013) Christina Ludwig Ruedi Aebersold 2013-05-17
PXD000259 Regulation of DosR regulon (Schubert) PeptideAtlas Mycobacterium tuberculosis TSQ Vantage Schubert et al. (2013) Olga Schubert Ruedi Aebersold 2013-05-16
PXD000256 M. tuberculosis SRM atlas (Schubert et al.) PeptideAtlas Mycobacterium tuberculosis TSQ Vantage Schubert et al. (2013) Olga Schubert Ruedi Aebersold 2013-05-16
PXD000109 ThinPrep Cervical Smear iTRAQ LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Elite Papachristou et al. (2013) Theodoros Roumeliotis 2013-05-09
PXD000138 Synthetic (Phospho)Peptide Library PRIDE Homo sapiens LTQ Orbitrap Velos Marx et al. (2013) Simone Lemeer 2013-05-05
PXD000211 Arabidopsis nanodomain-delimited ABA signaling pathway regulates the anion channnel SLAH3 PRIDE Arabidopsis thaliana (Mouse-ear cress) instrument model: LCQ Duo; instrument model: qSTAR Demir et al. (2013) Yvonne Reinders 2013-05-02
PXD000172 Quantitative dissection and stoichiometry determination of the human SET1/MLL histone methyltransferase complexes PRIDE Homo sapiens LTQ Orbitrap Velos van Nuland et al. (2013) A.H. Smits 2013-05-02
PXD000165 Analysis of botrytis cinerea mycelium proteins PRIDE Botryotinia fuckeliana (strain T4) (Noble rot fungus) (Botrytis cinerea), Botryotinia fuckeliana (strain B05.10) (Noble rot fungus) (Botrytis cinerea) 4800 Proteomics Analyzer; Synapt MS Gonzalez-Fernandez et al. (2013) Kerman Aloria 2013-05-02
PXD000158 Characterization of the Cardiac Myosin Binding Protein-C Phosphoproteome in Healthy and Failing Human Hearts PRIDE Homo sapiens , Mus musculus LTQ Orbitrap; LTQ Orbitrap Elite Kooij et al. (2013) Ronald Holewinski 2013-05-01
PXD000222 Comparative Phosphoproteomic Analysis of G2-checkpoint Recovery PRIDE Homo sapiens instrument model: LTQ; LTQ Orbitrap; LTQ; instrument model: LTQ-Orbitrap MS Dataset with its publication pending Teck Yew Low 2013-05-01
PXD000217 Phosphoproteomics data classify haematological cancer cell lines according to tumour type and sensitivity to kinase inhibitors PRIDE Homo sapiens , Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Casado et al. (2013) Pedro Casado-Izquierdo 2013-04-26
PXD000083 Glycosyltransferases from oat (Avena) implicated in the acylation of avenacins PRIDE Avena strigosa (black oat) LTQ Orbitrap; instrument model: LTQ Orbitrap Owatworakit et al. (2013) Gerhard Saalbach 2013-04-24
PXD000185 Kinase Substrate Enrichment Analysis Provides Insights into the Heterogeneity of Signaling Pathway Activation in Leukemia Cells PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Casado et al. (2013) Pedro Casado-Izquierdo 2013-04-09
PXD000127 15N Limitation of detection in Pseudomonas fluorescens PRIDE Pseudomonas fluorescens LTQ Orbitrap; instrument model: LTQ Orbitrap Taubert, von Bergen & Seifert (2013) Jana Seifert 2013-04-09
PXD000113 GeLC-MS/MS analysis of cereal aphid saliva PRIDE Metopolophium dirhodum (Rose grain aphid), Sitobion avenae (English grain aphid) LTQ Rao, Carolan & Wilkinson (2013) James Carolan 2013-04-09
PXD000141 Mycobacterium tuberculosis ATP-binding Proteome PRIDE Mycobacterium tuberculosis H37Rv LTQ Wolfe et al. (2013) Karen Dobos 2013-04-08
PXD000123 Long term water deficit stress in grapevine PRIDE Vitis vinifera LTQ Cramer et al. (2013) Steve Van Sluyter 2013-03-25
PXD000120 Proteogenomic Analysis of Human Colon Carcinoma Cell Lines LIM1215, LIM1899 and LIM2405 PRIDE Homo sapiens LTQ Fanayan et al. (2013) Susan Fanayan 2013-03-14
PXD000016 Physiological adaptation of the Rhodococcus jostii RHA1 membrane proteome to steroids as growth substrates PRIDE Rhodococcus sp. (strain RHA1) LTQ Orbitrap; instrument model: LTQ-Orbitrap Haußmann et al. (2013) Ansgar Poetsch 2013-03-06
PXD000043 Proteomic profiling of thermal acclimation in Drosophila melanogaster PRIDE Drosophila (fruit flies) instrument model: HCT Ultra PTM Discovery System; Bruker Daltonics HCT Series Colinet et al. (2013) Emmanuelle Com 2013-03-04
PXD000079 Formalin-fixed Human Ovarian Cancer Tryptic Peptide LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Meding et al. (2013) Stephan Meding 2013-02-28
PXD000124 mESC shotgun and positional proteomics based on deep proteome sequence database (derived from RIBOseq data) PRIDE Mus musculus LTQ Orbitrap; instrument model: LTQ-Orbitrap Menschaert et al. (2013) Gerben Menschaert 2013-02-26
PXD000143 Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives PRIDE Mus musculus LTQ Orbitrap Velos Spruijt et al. (2013) A.H. Smits 2013-02-26
PXD000036 Albuminome from human serum and CSF PRIDE Homo sapiens LTQ Orbitrap Elite Holewinski et al. (2013) Ronald Holewinski 2013-02-25
PXD000157 Proteome analysis of U2OS whole cell lysates PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Beck et al. (2011) Alexander Schmidt 2013-02-22
PXD000008 Carbon source-induced reprogramming of the cell wall proteome and secretome modulates the adherence and drug resistance of the fungal pathogen Candida albicans PRIDE Candida albicans SC5314 Q-Tof ultima; instrument model: QToF-Ultima Ene et al. (2012) Clemens J. Heilmann 2013-02-20
PXD000128 Rat Liver Microsomes by 2D-LC-MS/MS PRIDE Rattus norvegicus TripleTOF 5600 Golizeh & Sleno (2013) Lekha Sleno 2013-02-19
PXD000150 MSE vs IM-MSE comparison PRIDE Escherichia coli Synapt MS Dataset with its publication pending Yishai Levin 2013-02-18
PXD000142 Streptococcus uberis extracellular proteome PRIDE Streptococcus Bruker Daltonics esquire series; instrument model: Bruker Esquire HCT Plus Dataset with its publication pending Anita Jaglarz 2013-02-13
PXD000071 Rapid and deep profiling of human induced pluripotent stem cell proteome by one-shot nanoLC-MS/MS analysis with meter-scale monolithic silica columns PRIDE Homo sapiens TripleTOF 5600 Yamana et al. (2013) Mio Iwasaki 2013-02-07
PXD000059 Proteomics of the Milk Fat Globule Membrane from Camelus dromedarius PRIDE Camelus dromedarius (Arabian camel) LTQ Orbitrap Saadaoui et al. (2013) HENRY CELINE 2013-02-05
PXD000134 The quantitative proteomes of human-induced pluripotent stem cells and embryonic stem cells PRIDE Homo sapiens LCQ Classic; LTQ Orbitrap Velos Munoz et al. (2011) Teck Yew Low 2013-02-01
PXD000111 Mycobacterium tuberculosis culture filtrate LC-MS/MS PRIDE Mycobacterium tuberculosis H37Rv LTQ FT Albrethsen et al. (2013) Ida Rosenkrands 2013-01-24
PXD000021 D-score PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Vaudel et al. (2013) Lennart Martens 2013-01-23
PXD000026 Analysis of E2F2 interacting proteins PRIDE Homo sapiens , Homo sapiens instrument model: Q-Tof Micro (Waters); Q-Tof micro Osinalde et al. (2013) Nerea Osinalde 2013-01-21
PXD000044 Stable isotope labeling with amino acids in mouse xenografts. PRIDE Homo sapiens , Mus musculus LTQ Orbitrap Dataset with its publication pending Serge Urbach 2013-01-17
PXD000039 Chr16-HPP.Pilot experiment.JPR HPP Special issue PRIDE Human dissociation method Segura et al. (2013) J. Alberto Medina-Aunon 2013-01-15
PXD000089 Proteomic and phosphoproteomic data of colorectal cancer tissues and cells for Chromosome-Centric Human Proteome Project PRIDE Homo sapiens LTQ Orbitrap Velos Shiromizu et al. (2013) Takashi Shiromizu 2013-01-11
PXD000061 Proteome-wide purification of O-GlcNAc proteins PRIDE Homo sapiens LTQ Orbitrap; LTQ Orbitrap Velos Hahne et al. (2013) Hannes Hahne 2013-01-10
PXD000066 In-depth membrane proteomic study of breast cancer tissues PRIDE Homo sapiens LTQ Orbitrap Velos Muraoka et al. (2013) satoshi muraoka 2013-01-08
PXD000104 Chick vestibular hair bundles PRIDE Gallus gallus LTQ Orbitrap Velos Shin et al. (2013) Peter Gillespie 2013-01-08
PXD000058 SILAC Osteoblast PRIDE Homo sapiens LTQ Orbitrap Kliemt et al. (2013) Stefanie Kliemt 2012-12-19
PXD000112 Zebrafish plasma analyzed by CE- and LC-MS/MS PRIDE Danio rerio (Brachydanio rerio) Bruker Daltonics amaZon series Dataset with its publication pending Anthonius A.M. Heemskerk 2012-12-18
PXD000094 Proteogenomics of Tistlia consotensis PRIDE Bacteria LTQ Orbitrap; instrument model: LTQ Orbitrap Rubiano-Labrador et al. (2014) Jean ARMENGAUD 2012-12-18
PXD000027 maize leaf ESI-Q-TOF MS PRIDE Zea mays instrument model: ESI-Q-TOF MS Hu et al. (2013) Yufeng Hu 2012-12-14
PXD000025 Phosphoproteomic analysis of Rhodopseudomonas palustris PRIDE Rhodopseudomonas palustris LTQ Orbitrap; instrument model: Triple TOF; TripleTOF 5600; instrument model: LTQ Orbitrap Hu et al. (2012) Chia-Wei Hu 2012-12-12
PXD000101 Human prostate serum SRM (Cima et al.) PeptideAtlas Homo sapiens 4000 QTRAP Cima et al. (2011) Terry Farrah Ruedi Aebersold 2012-12-11
PXD000102 Human urine SRM (Selevsek et al.) PeptideAtlas Homo sapiens TSQ Vantage Selevsek et al. (2011) Terry Farrah Ruedi Aebersold 2012-12-11
PXD000100 Human CAP ovarian cancer plasma (Huettenhain et al.) PeptideAtlas Homo sapiens QTRAP 5500 Hüttenhain et al. (2012) Ruth Hüttenhain Ruedi Aebersold 2012-12-11
PXD000099 Yeast phospho site changes in Pda1 Pfk2 Gpd1 (Oliveira, et al.) PeptideAtlas Saccharomyces cerevisiae TSQ Vantage Oliveira et al. (2012) Christina Ludwig Ruedi Aebersold 2012-12-11
PXD000098 Label-free quantification of Leptospira (Ludwig et al.) PeptideAtlas Leptospira interrogans TSQ Vantage Ludwig et al. (2012) Christina Ludwig Ruedi Aebersold 2012-12-11
PXD000097 dMRM four human chr18 proteins in liver & plasma PeptideAtlas Homo sapiens 6460 Triple Quadrupole LC/MS Zgoda et al. (2013) Aleksey Filimonov Sergei Moshkovskii 2012-12-11
PXD000096 RIPchipSRM C. elegans miR58 targets (Jovanovic, et al.) PeptideAtlas Caenorhabditis elegans 4000 QTRAP Jovanovic et al. (2012) Lukas Reiter Michael O. Hengartner 2012-12-11
PXD000093 Human Chr18. 23 light endogenous peps for 19 prots (Zgoda, et al.) PeptideAtlas Homo sapiens Agilent 6410 Triple Quad Zgoda et al. (2013) Aleksey Filimonov Alexander Archakov 2012-12-11
PXD000092 Human Chr18. 25 light, 17 heavy synth peps for 21 prots (Zgoda, et al.) PeptideAtlas Homo sapiens Agilent 6410 Triple Quad Zgoda et al. (2013) Aleksey Filimonov Alexander Archakov 2012-12-11
PXD000091 Human Chr18. 25 light endogenous peps for 21 prots (Zgoda, et al.) PeptideAtlas Homo sapiens Agilent 6410 Triple Quad Zgoda et al. (2013) Aleksey Filimonov Alexander Archakov 2012-12-11
PXD000048 Tandem MOAC identifies novel in vivo MAP kinase substrates in Arabidopsis thaliana. PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Hoehenwarter et al. (2013) Volker Egelhofer 2012-12-11
PXD000004 Identification and quantification of human postmortem frontal cortex proteome with a SILAM mouse brain standard PRIDE Homo sapiens instrument model: QExactive; Q Exactive MacDonald et al. (2012) Matthew L. MacDonald 2012-12-10
PXD000088 Human CAP urine (Huettenhain et al.) PeptideAtlas Homo sapiens TSQ Vantage Hüttenhain et al. (2012) Ruth Hüttenhain Ruedi Aebersold 2012-12-06
PXD000087 Human CAP crude plasma (Huettenhain et al.) PeptideAtlas Homo sapiens TSQ Vantage Hüttenhain et al. (2012) Ruth Hüttenhain Ruedi Aebersold 2012-12-06
PXD000086 Human CAP depleted plasma (Huettenhain et al.) PeptideAtlas Homo sapiens TSQ Vantage Hüttenhain et al. (2012) Ruth Hüttenhain Ruedi Aebersold 2012-12-06
PXD000085 Human Chr18. 25 synthetic peptides for 21 proteins (Zgoda, et al.) PeptideAtlas Homo sapiens Agilent 6410 Triple Quad Zgoda et al. (2013) Aleksey Filimonov Alexander Archakov 2012-12-06
PXD000042 Human plasma LC-MS/MS PRIDE Homo sapiens Bruker Daltonics amaZon series Dataset with its publication pending Ekaterina Mostovenko 2012-12-05
PXD000062 A bioinformatics approach for integrated transcriptomic and proteomic comparative analyses of model and non-sequenced anopheline vectors of human malaria parasites PRIDE Albimanus 6520 Quadrupole Time-of-Flight LC/MS Ubaida Mohien et al. (2013) Ceereena Ubaida Mohien 2012-11-02
PXD000031 Purified FLAG-Hrp1 GeLC-MS/MS PRIDE Schizosaccharomyces pombe (Fission yeast) LTQ Orbitrap Velos Pointner et al. (2012) Punit Prasad 2012-11-01
PXD000056 Cyanophora paradoxa muroplast LC-MSMS PRIDE Cyanophora paradoxa LTQ Orbitrap Facchinelli et al. (2013) Fabio Facchinelli 2012-10-30
PXD000009 Discovery and identification of potential markers of Childhood Absence Epilepsy by MALDI imaging mass spectrometry PRIDE Mus musculus LTQ Orbitrap Lagarrigue et al. (2012) Mélanie Lagarrigue 2012-09-24
PXD000028 HIgh fat refined sugar diet and hippocampus PRIDE Rattus norvegicus LTQ Dataset with its publication pending Heather Francis 2012-09-14
PXD000012 Resveratrol-induced changes of the human adipocyte secretion profile. PRIDE Homo sapiens instrument model: LCQ Duo Rosenow et al. (2012) Jean-Paul Noben 2012-08-31
PXD000017 Analysis of the rat hypothalamus proteome by data independent label-free liquid chromatography tandem mass spectrometry PRIDE Rattus norvegicus microchannel plate detector; Q-TOF Premier; ACQUITY UPLC; electrospray ionization Stelzhammer et al. (2012) Viktoria Stelzhammer 2012-08-23
PXD000013 iQUARI PRIDE Pyrococcus furiosus, Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Vaudel et al. (2012) Lennart Martens 2012-08-13
PXD000014 human 293 cells PEDF LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Jerebtsova et al. (2012) Yuri Obukhov 2012-08-08
PXD000005 Proteomic screen reveals Fbw7 as a modulator of the NF-kB pathway PRIDE Homo sapiens LTQ Orbitrap Velos Arabi et al. (2012) Rui Branca 2012-06-29
PXD000001 TMT spikes PRIDE Erwinia carotovora instrument model: LTQ Orbitrap Velos; LTQ Orbitrap Velos Gatto & Christoforou (2014) Laurent Gatto 2012-05-11
PXD000002 Combined personal saliva proteome and microbioproteome PRIDE Homo sapiens linear ion trap no publication Attila Csordas 2012-05-11
PXD000003 Human CAP ovarian cancer plasma (Huettenhain et al.) PeptideAtlas Homo sapiens QTRAP 5500 Hüttenhain et al. (2012) Ruth Hüttenhain Ruedi Aebersold 2012-05-11