Below is a listing of publicly accessible ProteomeXchange datasets. Additional datasets will become visible as they are released.


Search metadata for ProteomeXchange datasets: (e.g. "liver", "musculus", "5600", etc.)
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Dataset Identifier Title Repos Species Instrument Publication Primary Submitter LabHead Announcement Date
PXD003498 Influenza A virus- integrated glycomics, proteomics and glycoproteomics PRIDE Orthomyxoviridae, Homo sapiens Q Exactive Khatri et al. (2016) Kshitij Khatri Joseph Zaia 2016-04-29
PXD003003 Proteomic characterisation of extracellular vesicles derived from first trimester placentae PRIDE Homo sapiens LTQ Orbitrap Tong et al. (2016) Torsten Kleffmann Larry Chamley 2016-04-29
PXD003625 A differential proteomics pipeline for unsequenced species PRIDE Escherichia coli, Taenia solium (Pork tapeworm), Taenia hydatigena amaZon ETD Yılmaz Ş et al. (2016) Sule Yilmaz Lennart Martens 2016-04-29
PXD003386 Bovine sperm surface lectinome PRIDE Bos taurus LTQ Orbitrap Elite Defaus et al. (2016) Sira Defaus David Andreu 2016-04-28
PXD003733 Quantitative evaluation of FASP and MED FASP protocols PRIDE Mus musculus , Homo sapiens LTQ Orbitrap Wiśniewski (2016) Jacek Wisniewski Jacek R Wisniewski 2016-04-28
PXD001838 Proteomics of EBV-infected lytic and refractory cells PRIDE Homo sapiens LTQ Orbitrap Koganti et al. (2015) Jizu Zhi Sumita Bhaduri-McIntosh 2016-04-27
PXD000685 Virotrap: Abducting Protein Complexes from Mammalian Cells PRIDE Homo sapiens Q Exactive Dataset with its publication pending Sven Eyckerman Sven Eyckerman 2016-04-27
PXD003754 Global Membrane Protein Interactome Analysis using In vivo Crosslinking and MS-based Protein Correlation Profiling PRIDE Homo sapiens Q Exactive Larance et al. (2016) Vackar Afzal Angus Lamond 2016-04-27
PXD001841 Phosphorylation of S.pombe Rap1 analysed by LC-MS/MS PRIDE Schizosaccharomyces pombe LTQ Orbitrap Velos Amelina et al. (2015) Andrew Thompson Andrew James Thompson 2016-04-27
PXD001846 SILAC Mass Spectrometry of U2AF2 Interactome in Resting and Activated CD4 T cells PRIDE Homo sapiens TripleTOF 5600 Whisenant et al. (2015) Thomas Whisenant Daniel R. Salomon, M.D. 2016-04-27
PXD001843 Protein Interactome of U2AF2 during T cell activation PRIDE Homo sapiens TripleTOF 5600 Whisenant et al. (2015) Thomas Whisenant Daniel R. Salomon, M.D. 2016-04-27
PXD001777 Synaptosome Proteomics, Fraction 4 PRIDE Rattus norvegicus LTQ Orbitrap Palmfeldt et al. (2016) Johan Palmfeldt Johan Palmfeldt 2016-04-27
PXD001775 Synaptosome Proteomics, Fraction 2 PRIDE Rattus norvegicus LTQ Orbitrap Palmfeldt et al. (2016) Johan Palmfeldt Johan Palmfeldt 2016-04-27
PXD001776 Synaptosome Proteomics, Fraction 3 PRIDE Rattus norvegicus LTQ Orbitrap Palmfeldt et al. (2016) Johan Palmfeldt Johan Palmfeldt 2016-04-27
PXD001849 Proteomic analysis of gynecologic cancer tissue PRIDE Homo sapiens LTQ Orbitrap Hiramatsu et al. (2016) Satoshi Serada Tetsuji Naka 2016-04-27
PXD001859 Coordinated assembly of NHE3, IRBIT, NHERF1, and ezrin ameliorates fluid malabsorption in diabetes PRIDE Mus musculus Q Exactive He et al. (2015) Peijian He Peijian He1 2016-04-27
PXD003924 Nanonets collect cancer secretome from pericellular space PRIDE Homo sapiens LTQ Orbitrap Zhou et al. (2016) Rong Zhou Bing Xu 2016-04-27
PXD004058 Cardiotoxocity of Cancer Therapy Biomarkers MassIVE Homo sapiens LTQ Orbitrap; Q Exactive Dataset with its publication pending Lynn Beer David Speicher 2016-04-26
PXD003359 Comparative proteomics analysis of soybean sprouts that treated with deionized water or with 6 mM Ca2+ PRIDE Glycine max x Glycine soja TripleTOF 5600 Wang et al. (2016) Xinkun Wang xinkun-wang 2016-04-26
PXD001962 Phosphoproteomics of Human ACHN cells by estrogen PRIDE Homo sapiens LTQ Orbitrap Chen et al. (2016) Wei-Chi Ku Wei-Chi Ku 2016-04-26
PXD002992 Fly RBPome PRIDE Drosophila melanogaster (Fruit fly) Q Exactive Dataset with its publication pending Koshi Imami Matthias Selbach 2016-04-26
PXD003822 Human AML patient samples, Method Optimization, LC-MSMS PRIDE Homo sapiens LTQ Orbitrap Elite Aasebø et al. (2016) Elise Aasebo Frode Steingrimsen Berven 2016-04-26
PXD003970 Decoding the complete arsenal for cellulose and hemicellulose deconstruction in the highly efficient cellulose decomposer Paenibacillus O199 PRIDE Paenibacillus sp. LTQ Orbitrap Dataset with its publication pending Daniela Zuehlke Katharina Riedel 2016-04-26
PXD003725 Salivary biomarkers of diabetic retinopathy, part 3 PRIDE Homo sapiens Orbitrap Fusion Dataset with its publication pending Mun Fai Loke Loke Mun Fai 2016-04-26
PXD003724 Potential salivary biomarkers with diabetic retinopathy, part 2 PRIDE Homo sapiens Orbitrap Fusion Dataset with its publication pending Mun Fai Loke Loke Mun Fai 2016-04-26
PXD003723 Salivary biomarkers of diabetic retinopathy, part 1 PRIDE Homo sapiens Orbitrap Fusion Dataset with its publication pending Mun Fai Loke Loke Mun Fai 2016-04-26
PXD003273 Partner of Yeast Telomerase TLC1 RNA (TLC1) PRIDE Saccharomyces cerevisiae (Baker's yeast) Q Exactive Dataset with its publication pending Raymund Wellinger Raymund J. Wellinger 2016-04-26
PXD003460 Using the ubiquitin-modified proteome to monitor distinct and spatially restricted protein homeostasis dysfunction MassIVE Homo sapiens Q Exactive Dataset with its publication pending Eric Bennett Eric J Bennett 2016-04-25
PXD003653 Protein precipitation of diluted samples with acetone leads to higher protein recovery and reproducibility in comparison with TCA/acetone approach PRIDE Rattus norvegicus TripleTOF 5600 Santa, Anjo & Manadas (2016) Cátia Santa Bruno Manadas 2016-04-25
PXD002847 Profiling of Native and Protease_Generated Protein Amino Termini from Formalin-Fixed, Paraffin-Embedded Tissues PRIDE Mus musculus Q Exactive Lai et al. (2016) Zon Lai Oliver Schilling 2016-04-25
PXD003602 Protein expression in tomato tissues as a function of Al3+ stress (Suping_Exp2) PRIDE Solanum lycopersicum LTQ Orbitrap Elite Zhou et al. (2016) Ted Thannhauser Ted Thannhauser 2016-04-25
PXD003601 Protein expression in tomato tissues as a function of Al3+ stress (Suping_Exp4) PRIDE Solanum lycopersicum LTQ Orbitrap Elite Zhou et al. (2016) Ted Thannhauser Ted Thannhauser 2016-04-25
PXD003600 Protein expression in tomato tissues as a function of Al3+ stress (Suping_Exp5) PRIDE Solanum lycopersicum LTQ Orbitrap Elite Zhou et al. (2016) Ted Thannhauser Ted Thannhauser 2016-04-25
PXD003575 Protein expression in tomato tissues as a function of Al3+ stress (Suping_Exp1) PRIDE Solanum lycopersicum LTQ Orbitrap Elite Zhou et al. (2016) Ted Thannhauser Ted Thannhauser 2016-04-25
PXD004038 Lysine acetylation in Mycobacterium abscessus GZ002 MassIVE Mycobacterium abscessus instrument model: LC-MS/MS Dataset with its publication pending JINTAO GUO Tianyu Zhang 2016-04-24
PXD004020 Molecular signatures of membrane protein complexes underlying muscular dystrophy PRIDE Mus musculus 6520 Quadrupole Time-of-Flight LC/MS Turk et al. (2016) Jordy Hsiao Michael Eugene Wright 2016-04-22
PXD003447 pig microbiota ob/le PRIDE Sus scrofa domesticus (domestic pig) LTQ Orbitrap Elite Heinritz et al. (2016) Jana Seifert Jana Seifert 2016-04-22
PXD003392 Tagless Analysis of Protein-Protein Interactions in Desufovibrio vulgaris. MassIVE Desulfovibrio vulgaris str. Hildenborough 4800 Proteomics Analyzer Dataset with its publication pending Witkowska Mark D. Biggin 2016-04-21
PXD004024 MITOCHONDRIAL Akt REGULATION OF HYPOXIC METABOLIC REPROGRAMMING MassIVE Homo sapiens Q Exactive Dataset with its publication pending Hsin-Yao Tang Dario C. Altieri 2016-04-21
PXD003232 Identification of N-terminally arginylated proteins from the moss Physcomitrella patens PRIDE Physcomitrella patens subsp. patens LTQ Orbitrap Velos Hoernstein et al. (2016) Ralf Reski Ralf Reski 2016-04-21
PXD003091 Yeast cell wall glycoproteomic SWATH-MS PRIDE Saccharomyces cerevisiae (Baker's yeast) TripleTOF 5600 Zacchi & Schulz (2016) Benjamin Schulz Benjamin Luke Schulz 2016-04-21
PXD000915 Effect of Chronic Methamphetamine Exposure on the Neuroproteomics of Rat Brain Tissues PRIDE Rattus norvegicus LTQ Orbitrap Velos Zhu et al. (2016) Rui Zhu Yehia Mechref 2016-04-21
PXD003564 Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multi-algorithme Pipeline, Part 1/5 PRIDE Plutella xylostella (Diamondback moth) (Plutella maculipennis) LTQ Orbitrap Velos Dataset with its publication pending Xun Zhu Department of Entomology, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China 2016-04-21
PXD003815 Quantitative proteome profiling of Leishmania donovani after hypericin treatment PRIDE Leishmania donovani LTQ Orbitap Discovery Singh & Dubey (2016) Shalini Singh Professsor Vikash Kumar Dubey 2016-04-21
PXD002990 Complementary Phosphoproteomic Approaches Link IL-23R Downstream Signaling with Metabolic Adaptation in Lymphocytes PRIDE Homo sapiens Q Exactive Lochmatter et al. (2016) Roman Fischer Roman Fischer 2016-04-21
PXD003685 The adaptive metabolic response involves specific protein glutathionylation during the filamentation process in the pathogen Candida albicans PRIDE Candida albicans LTQ Orbitrap Velos Gergondey et al. (2016) Camille GARCIA Jean-Michel Camadro 2016-04-21
PXD002597 The Skin Barrier Defects Caused by Keratinocyte-Specific Deletion of ADAM17 or EGFR are Based on Highly Similar Proteome and Degradome Alterations PRIDE Mus musculus LTQ Orbitrap Tholen et al. (2016) Stefan Tholen Oliver Schilling 2016-04-20
PXD002269 ER stress response in hepatocytes upon Plasmodium infection PRIDE Homo sapiens LTQ Orbitrap Inácio et al. (2015) Nagarjuna Nagaraj Maria Manuel Dias Mota 2016-04-20
PXD003425 Modified fish diet in six dolphins PRIDE Tursiops truncatus (Atlantic bottle-nosed dolphin) (Delphinus truncatus) TripleTOF 5600 10.3389/fendo.2016.00033 Philip Sobolesky Michael G. Janech 2016-04-20
PXD003516 Proteomic insight into the response of Arabidopsis chloroplasts to darkness PRIDE Arabidopsis thaliana (Mouse-ear cress) Q Exactive Dataset with its publication pending Shaojun Dai Shaojun Dai 2016-04-20
PXD002875 Proteome-wide quantitative multiplexed profiling of protein expression: Carbon source dependency in S. cerevisiae PRIDE Saccharomyces cerevisiae (Baker's yeast) Orbitrap Fusion Paulo et al. (2015) Joao Paulo Joao A. Paulo 2016-04-20
PXD000011 TAP-GluN1, PSD95-TAP, WT (control) BNP-LC-MS/MS proteomics PRIDE Mus musculus LTQ Orbitrap; instrument model: LTQ-Orbitrap Dataset with its publication pending Rene Frank Seth Grant 2016-04-20
PXD003098 In vivo trapping of thioredoxin substrates PRIDE Escherichia coli LTQ Didier Vertommen Jean-François Collet 2016-04-19
PXD003526 Proteotyping of microbial communities reveals the correlations between the microorganisms and the process parameters PRIDE Acyrthosiphon pisum (Pea aphid) LTQ Orbitrap Elite Dataset with its publication pending Robert Heyer Dirk Benndorf 2016-04-19
PXD003372 Proteomic and morphological analyses of post-flooding recovery in soybean root exposed to aluminum oxide nanoparticles PRIDE Glycine max (Glycine hispida) LTQ Orbitrap Ghazala Mustafa Setsuko KOMATSU 2016-04-19
PXD003223 Oncogenic KRAS Regulates Tumor Cell Signaling via Stromal Reciprocation PRIDE Mus musculus Q Exactive; LTQ Orbitrap Tape et al. (2016) Christopher Tape Claus Jorgensen 2016-04-19
PXD003228 Interaction partners of arginyl-tRNA protein transferase in the moss Physcomitrella patens PRIDE Physcomitrella patens subsp. patens LTQ Orbitrap Velos Hoernstein et al. (2016) Jens Vanselow Andreas Schlosser 2016-04-19
PXD003271 Proteomic analysis of clear cell renal cell carcinoma tissue versus matched normal kidney tissue PRIDE Homo sapiens LTQ Dataset with its publication pending Benjamin Neely Richard R. Drake 2016-04-18
PXD003462 Quantitative analysis of the supernatant from native and transfected CHO cells using iTRAQ 8-plex technique PRIDE Rattus norvegicus Q Exactive Zhu et al. (2016) Guijie Zhu Norman Dovichi 2016-04-18
PXD003550 Proteome analysis of adipose-derived stem cells cultured under clinically relevant conditions in a wound healing perspective PRIDE Homo sapiens Q Exactive Riis et al. (2016) Allan Stensballe Allan Stensballe 2016-04-18
PXD003984 Identification of WDR76 DNA repair protein uncovered by protein interaction analysis MassIVE H. sapiens LTQ Dataset with its publication pending Joshua Gilmore Michael P. Washburn 2016-04-18
PXD002839 Nuclear phosphoproteomics analysis of resting and IL-2-stimulated T lymphocytes PRIDE Homo sapiens Q Exactive Osinalde et al. (2016) Nerea Osinalde Irina Kratchmarova 2016-04-18
PXD003209 Proteomics of Extracellular Vesicles Harvested with ExtraPEG PRIDE Homo sapiens LTQ Orbitrap Velos Rider, Hurwitz & Meckes (2016) Mark Rider David G. Meckes Jr. 2016-04-18
PXD001839 Vinculin-network mediated cytoskeletal remodeling regulates contractile function in the aging heart - Rat Data PRIDE Rattus norvegicus LTQ Orbitrap Elite Kaushik et al. (2015) Vidya Venkatraman Dr. Jennifer Van Eyk 2016-04-15
PXD002783 Protein Profile Changes in the Frontotemporal Lobes in Human Severe Traumatic Brain Injury PRIDE Homo sapiens Q Exactive Xu et al. (2016) Wei Ge Wei Ge 2016-04-15
PXD002726 Optimized data analysis avoiding trypsin artefacts PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Schittmayer et al. (2016) Katarina Fritz Ruth Birner-Gruenberger 2016-04-15
PXD002545 Phosphoproteomic studies of role of LAR protein tyrosine phosphatase in mouse embryonic fibroblasts PRIDE Mus musculus LTQ Orbitrap Elite Sarhan et al. (2016) Debbie Cunningham Debbie L Cunningham 2016-04-15
PXD003079 Proteomics analysis of isolated plasma membrane and thylakoid membrane from Synechocystis species PCC 6803 PRIDE Synechocystis sp. PCC 6803 LTQ Orbitrap Velos Liberton et al. (2016) Matthew Monroe Himadri Pakrasi 2016-04-15
PXD000446 MSE quantified stroma proteome PRIDE Arabidopsis thaliana (Mouse-ear cress) Synapt MS Helm et al. (2014) Sacha Baginsky Prof. Dr. Sacha Baginsky 2016-04-14
PXD003761 Comparative proteomic analysis reveals differential root proteins in Medicago sativa and Medicago truncatula in response to salt stress PRIDE Medicago sativa , Medicago truncatula var. truncatula 4800 Proteomics Analyzer Long et al. (2016) Ruicai Long Qingchuan Yang 2016-04-14
PXD002797 Dynamics of protein expression reveals primary targets and secondary messengers of estrogen receptor signaling in MCF-7 breast cancer cells PRIDE Homo sapiens LTQ Orbitrap XL Drabovich et al. (2016) Andrei Drabovich Andrei Drabovich 2016-04-14
PXD003753 Botrytis cinerea phosphoproteome. PRIDE Botryotinia fuckeliana (Noble rot fungus) (Botrytis cinerea) LTQ Orbitrap Velos Liñeiro et al. (2016) Cristina Chiva Francisco Javier Fernández Acero 2016-04-14
PXD003089 Mouse SJ, LC-MS/MS PRIDE Mus musculus LTQ Orbitrap Velos Kähne et al. (2016) Thilo Kaehne Thilo Kaehne 2016-04-14
PXD001903 Proteomics analysis of the effect of deletion of PUF3 on yeast via LC-MSMS. PRIDE Saccharomyces cerevisiae (Baker's yeast) Dionex instrument model; Mascot; Progenesis LC-MS; LTQ Orbitrap Elite Kershaw et al. (2015) David Talavera Graham Pavitt 2016-04-13
PXD001987 TMT-labeled quantitative protein profiling of hippocampus during human aging PRIDE Homo sapiens Q Exactive Xu et al. (2016) Wei Ge Wei Ge 2016-04-13
PXD001989 Proteomic Analysis of Drug-resistant Mycobacteria PRIDE Corynebacterineae Q Exactive Chen et al. (2015) Yuling Chen Yuling Chen 2016-04-13
PXD003370 1D LC-MS/MS proteomic profiling of MCF10A, HeLa, Hep G2, and HEK293 cells using peptide-based immunoaffinity enrichment and 105 commercially available monoclonal antibodies to proteins associated with the DNA damage response (DDR) network PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Jacob Kennedy Amanda G Paulovich 2016-04-13
PXD002171 Quantitative proteome analysis of hepatocellular carcinoma tissue PRIDE Homo sapiens LTQ Orbitrap Elite Naboulsi et al. (2016) Wael Naboulsi Barbara Sitek 2016-04-13
PXD003052 yeast membrane proteomics using Leu3 labelling PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Dataset with its publication pending Lars Nilse Oliver Schilling 2016-04-12
PXD003603 Toxoplasma gondii LC-MS/MS PRIDE Toxoplasma gondii RH impact; Bruker Daltonics amaZon series; maXis Sangaré et al. (2016) Benoit Westermann Sarah Cianferani 2016-04-12
PXD003679 Reduced-representation Phosphosignatures Measured by Quantitative Targeted MS MassIVE Homo sapiens Q Exactive Dataset with its publication pending Karl Clauser Jacob D. Jaffe 2016-04-12
PXD001282 Differential N-terminal COFRADIc analyses of Ogden fibroblasts PRIDE Homo sapiens LTQ Orbitrap Elite Myklebust et al. (2015) Line Merethe Myklebust Line Merethe Myklebust 2016-04-12
PXD000947 A Proteomics Approach to Identify New Cardiac Intercalated Disc Proteins PRIDE Rattus rattus (Black rat) Q Exactive Dataset with its publication pending Mirjam Damen Arjen Scholten 2016-04-12
PXD001930 Copper stress-induced changes in leaf soluble proteome of Cu-sensitive and tolerant Agrostis capillaris L. populations PRIDE Agrostis capillaris (Colonial bentgrass) (Agrostis tenuis) LCQ Deca XP Plus Hego et al. (2016) Claverol Claverol Marc Bonneu 2016-04-12
PXD002608 Proteomic changes in liver of Channa striatus in response to high temperature stress PRIDE Channa striata (Snakehead murrel) (Ophicephalus striatus) AB SCIEX instrument model Mahanty et al. (2016) Bimal Mohanty Bimal Prasanna Mohanty 2016-04-12
PXD003565 Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multi-algorithme Pipeline, Part 2/5 PRIDE Plutella xylostella (Diamondback moth) (Plutella maculipennis) LTQ Orbitrap Velos Dataset with its publication pending Xun Zhu Department of Entomology, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China 2016-04-12
PXD003566 Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multi-algorithme Pipeline, Part 3/5 PRIDE Plutella xylostella (Diamondback moth) (Plutella maculipennis) LTQ Orbitrap Velos Dataset with its publication pending Xun Zhu Department of Entomology, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China 2016-04-11
PXD003567 Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multi-algorithme Pipeline, Part 4/5 PRIDE Plutella xylostella (Diamondback moth) (Plutella maculipennis) LTQ Orbitrap Velos Dataset with its publication pending Xun Zhu Department of Entomology, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China 2016-04-11
PXD003568 Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multi-algorithme Pipeline, Part 5/5 PRIDE Plutella xylostella (Diamondback moth) (Plutella maculipennis) LTQ Orbitrap Velos Dataset with its publication pending Xun Zhu Department of Entomology, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China 2016-04-11
PXD003888 Identification of Proteins Sensitive to Thermal Stress in Human HEK293 cells PRIDE Homo sapiens QSTAR Xu et al. (2016) Guilian Xu David R. Borchelt 2016-04-11
PXD003926 Proteomics analysis of cardiac extracellular matrix remodeling in a porcine model of ischemia/reperfusion injury Guanidine Infarct, focal area PRIDE Sus scrofa LTQ Orbitrap Barallobre-Barreiro et al. (2012) Javier Barallobre-Barreiro MAnuel Mayr 2016-04-11
PXD003932 Spatial and temporal effects in protein post-translational modification distributions in the developing mouse brain PRIDE Mus musculus LTQ Orbitrap Velos Edwards, Schwämmle & Larsen (2014); Edwards et al. (2014) Veit Schwämmle Martin R Larsen 2016-04-11
PXD003914 Identification of Proteins Sensitive to Thermal Stress in Human Neuroblastoma and Glioma Cell Lines PRIDE Homo sapiens QSTAR Xu et al. (2012) Guilian Xu David R. Borchelt 2016-04-11
PXD002013 Lysine Acetylation Dynamics PRIDE Homo sapiens LTQ Orbitrap Tampella et al. (2015) Bryan Bryson Forest White 2016-04-11
PXD002768 Chicken spermatozoa protein extract analyzed by Top-down HRMS PRIDE Gallus gallus LTQ Orbitrap Velos Soler et al. (2016) Labas Valerie PAIB INRA platform, Mass spectrometry Laboratory, Valérie Labas 2016-04-11
PXD003554 Nuclear nucleolin interactome analysis PRIDE Homo sapiens LTQ Orbitrap Velos Salvetti et al. (2016) Yohann Couté Christophe Bruley 2016-04-11
PXD003178 Drosophila melanogaster proteome dynamics during embryogenesis - 1 PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap Velos; Q Exactive; TripleTOF 6600 Fabre et al. (2016) Bertrand Fabre Kathryn Lilley 2016-04-11
PXD003286 Changes in Gab2 phosphorylation and interaction partners in response to interleukin (IL)-2 stimulation in T-lymphocytes PRIDE Homo sapiens Q Exactive Osinalde et al. (2016) Nerea Osinalde Irina kratchmarova 2016-04-11
PXD002830 Arginine sensing in Leishmania PRIDE Leishmania donovani LTQ Orbitrap Goldman-Pinkovich et al. (2016) Keren Bendalak Dan Zilberstein 2016-04-11
PXD002742 Quantitative Proteomics Reveals Metabolic Reprogramming during ETHE1 Deficiency, Part 2 PRIDE Mus musculus LTQ Orbitrap Sahebekhtiari et al. (2016) Johan Palmfeldt Johan Palmfeldt 2016-04-11
PXD002741 Quantitative Proteomics Reveals Metabolic Reprogramming during ETHE1 Deficiency, Part 1 PRIDE Mus musculus LTQ Orbitrap Sahebekhtiari et al. (2016) Johan Palmfeldt Johan Palmfeldt 2016-04-11
PXD002188 Nucleolar proteome of the developing brain PRIDE Rattus norvegicus Q Exactive Slomnicki et al. (2016) Agata Malinowska Michal Dadlez 2016-04-11
PXD003480 Dionaea secretome stimulation PRIDE Dionaea muscipula (Venus flytrap) Q Exactive Dataset with its publication pending Waltraud Schulze Prof. Dr. Waltraud Schulze 2016-04-11
PXD003918 Proteomics analysis of cardiac extracellular matrix remodeling in a porcine model of ischemia/reperfusion injury: control, guanidine PRIDE Sus scrofa LTQ Orbitrap Barallobre-Barreiro et al. (2012) Javier Barallobre-Barreiro Manuel Mayr 2016-04-07
PXD003027 AD+CVD temporal lobe proteome PRIDE Homo sapiens QSTAR Gallart-Palau et al. (2016) Xavier Gallart Palau Siu Kwan Sze 2016-04-07
PXD003919 Proteomics analysis of cardiac extracellular matrix remodeling in a porcine model of ischemia/reperfusion injury: Infarcted, Guanidine PRIDE Sus scrofa LTQ Orbitrap Barallobre-Barreiro et al. (2012) Javier Barallobre-Barreiro Manuel Mayr 2016-04-07
PXD002353 Quantitative proteomics Reveals Targets of Protein Kinase SnRK1 in Arabidopsis under Submergence PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Elite Cho et al. (2016) Hsing Yi Cho Ming-Che Shih 2016-04-07
PXD001815 Quantitative Phosphoproteomics Reveals Targets of Protein Kinase SnRK1 in Arabidopsis under Submergence PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Elite Cho et al. (2016) Hsing Yi Cho Ming Che Shih 2016-04-07
PXD003122 A molecular model of sea urchin reversible adhesion based on quantitative proteomics PRIDE Paracentrotus lividus (Common sea urchin) Q Exactive Lebesgue et al. (2016) Nicolas Lebesgue Albert J.R Heck 2016-04-07
PXD002393 Label-free quantification in ion-mobility enhanced data-independent acquisition proteomics PRIDE Escherichia coli, Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) (Baker's yeast), Homo sapiens Synapt G2-S HDMS Distler et al. (2016) Ute Distler Stefan Tenzer 2016-04-07
PXD002759 Development and evaluation of a SILAC method for proteomic analysis of rat primary microglia PRIDE Rattus norvegicus Q Exactive Zhang et al. (2016) Ashley Cochran Stanley M. Stevens, Jr. 2016-04-07
PXD002584 Proteomic profiling reveals central role of STAT signaling during retinal degeneration in the rd10 mouse model PRIDE Mus musculus LTQ Orbitrap XL Ly et al. (2016) Juliane Merl-Pham Stefanie M. Hauck 2016-04-07
PXD003703 Troponin T mutations associated with HCM MassIVE Mus musculus instrument model: Orbitrap Velos Pro Dataset with its publication pending Aldrin V. Gomes Aldrin Gomes 2016-04-06
PXD002989 Analysis of mitochondrial proteins in the surviving myocardium after ischemia identifies mitochondrial pyruvate carrier expression as possible mediator of tissue viability. PRIDE Sus scrofa domesticus (domestic pig) LTQ Orbitrap Velos Fernández-Caggiano et al. (2016) Javier Barallobre-Barreiro Nieves Domenech Garcia 2016-04-06
PXD002417 Teleogryllus oceanicus (field cricket) wing bud proteomics PRIDE Teleogryllus oceanicus (black field cricket) TripleTOF 5600 Pascoal et al. (2016) Catherine Botting Catherine Helen Botting 2016-04-06
PXD003078 Recombinant shewasin D and shewasin A specificity preferences profiled by proteomic identification of protease cleavage sites (PICS) PRIDE Homo sapiens TripleTOF 5600 Leal et al. (2016) Rui Cruz Isaura Simões 2016-04-05
PXD002607 Slx5/8 alleviates replication stress by promoting mitotic progression PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Dataset with its publication pending Susan Van Riper Anja-Katrin Bielinsky 2016-04-05
PXD002760 Muscle biopsies from human neuromuscular diseases with dystrophic, inflammatory and myopathic pathology reveal common alterations in mitochondrial function PRIDE Homo sapiens Orbitrap Fusion Sunitha et al. (2016) Srinivas Bharath M. M. Srinivas Bharath 2016-04-04
PXD002344 Global and phosphoproteomic profiling of the DNA damage response in yeast by SILAC labeling and LC-MS/MS PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Huang et al. (2016) Jacob Kennedy Amanda G Paulovich 2016-04-04
PXD003417 Contribution of primary human fibroblasts and endothelial cells to the hallmarks of inflammation as determined by proteome profiling - secreted proteins of inflammatory stimulated fibroblasts PRIDE Homo sapiens Q Exactive Slany et al. (2016) Christopher Gerner Christopher Gerner 2016-04-04
PXD003416 Contribution of primary human fibroblasts and endothelial cells to the hallmarks of inflammation as determined by proteome profiling - secreted proteins of untreated fibroblasts PRIDE Homo sapiens Q Exactive Slany et al. (2016) Christopher Gerner Christopher Gerner 2016-04-04
PXD003415 Contribution of primary human fibroblasts and endothelial cells to the hallmarks of inflammation as determined by proteome profiling - nuclear proteins of inflammatory stimulated fibroblasts PRIDE Homo sapiens Q Exactive Slany et al. (2016) Christopher Gerner Christopher Gerner 2016-04-04
PXD003414 Contribution of primary human fibroblasts and endothelial cells to the hallmarks of inflammation as determined by proteome profiling - nuclear proteins of untreated fibroblasts PRIDE Homo sapiens Q Exactive Slany et al. (2016) Christopher Gerner Christopher Gerner 2016-04-04
PXD003413 Contribution of primary human fibroblasts and endothelial cells to the hallmarks of inflammation as determined by proteome profiling - cytoplasmic proteins of inflammatory stimulated fibroblasts PRIDE Homo sapiens Q Exactive Slany et al. (2016) Christopher Gerner Christopher Gerner 2016-04-04
PXD003412 Contribution of primary human fibroblasts and endothelial cells to the hallmarks of inflammation as determined by proteome profiling - cytoplasmic proteins of untreated fibroblasts PRIDE Homo sapiens Q Exactive Slany et al. (2016) Christopher Gerner Christopher Gerner 2016-04-04
PXD003411 Contribution of primary human fibroblasts and endothelial cells to the hallmarks of inflammation as determined by proteome profiling - secreted proteins of inflammatory stimulated endothelial cells PRIDE Homo sapiens Q Exactive Slany et al. (2016) Christopher Gerner Christopher Gerner 2016-04-04
PXD003410 Contribution of primary human fibroblasts and endothelial cells to the hallmarks of inflammation as determined by proteome profiling - secreted proteins of untreated endothelial cells PRIDE Homo sapiens Q Exactive Slany et al. (2016) Christopher Gerner Christopher Gerner 2016-04-04
PXD003409 Contribution of primary human fibroblasts and endothelial cells to the hallmarks of inflammation as determined by proteome profiling - nuclear proteins of inflammatory stimulated endothelial cells PRIDE Homo sapiens Q Exactive Slany et al. (2016) Christopher Gerner Christopher Gerner 2016-04-04
PXD003408 Contribution of primary human fibroblasts and endothelial cells to the hallmarks of inflammation as determined by proteome profiling - nuclear proteins of untreated endothelial cells PRIDE Homo sapiens Q Exactive Slany et al. (2016) Christopher Gerner Christopher Gerner 2016-04-04
PXD003407 Contribution of primary human fibroblasts and endothelial cells to the hallmarks of inflammation as determined by proteome profiling - cytoplasmic proteins of inflammatory stimulated endothelial cells PRIDE Homo sapiens Q Exactive Slany et al. (2016) Christopher Gerner Christopher Gerner 2016-04-04
PXD003406 Contribution of primary human fibroblasts and endothelial cells to the hallmarks of inflammation as determined by proteome profiling - cytoplasmic proteins of untreated endothelial cells PRIDE Homo sapiens Q Exactive Slany et al. (2016) Christopher Gerner Christopher Gerner 2016-04-04
PXD003149 Synthesis of chlorophyll-binding proteins in a fully-segregated ∆ycf54 strain of the cyanobacterium Synechocystis PCC 6803 PRIDE Synechocystis sp. (strain PCC 6803 / Kazusa) Q Exactive; maXis Hollingshead et al. (2016) Philip Jackson Christopher Neil Hunter 2016-03-31
PXD002939 Differential gene expression in Leishmania [SPP.] promastigotes. Leishmania chagasi PRIDE Leishmania chagasi 4800 Proteomics Analyzer Alcolea et al. (2016) J. Alberto Medina-Aunon Vicente Larraga 2016-03-31
PXD001994 miR-126 Governs Human Leukemia Stem Cell Quiescence and Therapeutic Resistance PRIDE Homo sapiens Orbitrap Fusion ETD Lechman et al. (2016) Erwin Schoof John E. Dick 2016-03-31
PXD003802 S-nitrosation of proteins relevant to Alzheimer’s disease during early stages of neurodegeneration PRIDE Mus musculus 6520 Quadrupole Time-of-Flight LC/MS Seneviratne et al. (2016) John Wishnok Steven R. Tannenbaum 2016-03-31
PXD003276 Comparison of the proteome of human adult and cord erythroid cells and changes in the proteome following reticulocyte maturation. PRIDE Homo sapiens LTQ Orbitrap Velos Wilson et al. (2016) Marieangela Wilson Jan Frayne 2016-03-31
PXD003399 The comparative proteomics research of Toxoplasma infection in mice liver PRIDE Mus musculus TripleTOF 5600 He et al. (2016) Junjun He Xingquan zhu 2016-03-31
PXD002585 Cathepsin B interstitial fluid proteome of murine breast cancers PRIDE Mus musculus Q Exactive Gomez-Auli et al. (2016) Alejandro Gomez-Auli Oliver Schilling 2016-03-31
PXD002451 Teleogryllus oceanicus (field cricket) wing bud proteomics: iTRAQ data PRIDE Teleogryllus oceanicus (black field cricket) TripleTOF 5600 Pascoal et al. (2016) Catherine Botting Catherine Helen Botting 2016-03-31
PXD002381 Comparison between matched microdissected and whole tissue breast cancer specimen PRIDE Homo sapiens LTQ Orbitrap De Marchi et al. (2016); De Marchi et al. (2016) Tommaso De Marchi Arzu Umar 2016-03-31
PXD003382 CEP215_gallus_interactome PRIDE Gallus gallus LTQ Orbitrap Velos Chavali et al. (2016) Pavithra Lakshminarasimhan Fanni gergely 2016-03-31
PXD003656 Mouse retinal tissue study in VEGF-induced hyperpermeability. PRIDE Mus musculus Q Exactive Jo et al. (2016) Dong-Gi Mun Sang-Won Lee 2016-03-31
PXD001728 Medicago truncatula drought stress recovery PRIDE Medicago truncatula (Barrel medic) (Medicago tribuloides) LTQ Orbitrap Lyon et al. (2016) David Lyon Stefanie Wienkoop 2016-03-31
PXD003500 Proteogenomic analysis of Mycobacterium smegmatis using high resolution mass spectrometry PRIDE Mycobacterium smegmatis (strain ATCC 700084 / mc155) Q Exactive Potgieter et al. (2016) Matthys Potgieter Nicola Mulder 2016-03-31
PXD001085 PHD3 and FIH substrates cluster in distinct signalling pathways PRIDE Homo sapiens Q Exactive Rodriguez et al. (2016) Alex von kriegsheim Alex von Kriegsheim 2016-03-31
PXD002252 Identification and characterization of DNA sequences that restrict genomic binding of the glucocorticoid receptor PRIDE Homo sapiens LTQ Orbitrap Telorac et al. (2016) David Meierhofer Sebastiaan H. Meijsing 2016-03-31
PXD003664 Serial interactome capture of the human cell nucleus PRIDE Homo sapiens Q Exactive Conrad et al. (2016) David Meierhofer Ulf Örom 2016-03-31
PXD003158 Effects of the antibacterial compund Allicin from garlic on Escherichia coli PRIDE Escherichia coli Synapt MS Müller et al. (2016) Lars Leichert Lars I Leichert 2016-03-31
PXD002373 Proteome and carbon flux analysis of Pseudomonas aeruginosa clinical isolates from different infection sites PRIDE Pseudomonas aeruginosa Synapt MS Lassek et al. (2016) Christian Lassek Katharina Riedel 2016-03-31
PXD003433 NELF-A phosphorylation site identification PRIDE Homo sapiens TripleTOF 5600 Dataset with its publication pending you li Ruichuan Chen 2016-03-31
PXD002078 Combined proteomic and transcriptomic analysis of Arion vulgaris PRIDE Arion vulgaris amaZon Speed ETD Bulat et al. (2016) Tanja Bulat Univ.Prof.Dr. Gert Lubec 2016-03-31
PXD003139 Two unrelated 8-vinyl reductases ensure production of mature chlorophylls in Acaryochloris marina PRIDE Acaryochloris marina (strain MBIC 11017) Q Exactive Chen et al. (2016) Philip Jackson Prof. C Neil Hunter, FRS 2016-03-31
PXD003806 Mps1(Mph1) Kinase phosphorylates Mad3 to Inhibit Cdc20Slp1 –APC/C and maintain spindle checkpoint arrests PRIDE Schizosaccharomyces pombe LTQ Orbitrap Zich et al. (2016) Heather Barker Kevin Hardwick 2016-03-31
PXD003436 FOXE3 Contributes to Peters Anomaly through Transcriptional Regulation of an Autophagy Associated Protein termed DNAJB1 PRIDE Homo sapiens LTQ Orbitrap Velos 10.1038/ncomms10953 OM Genetics S. Amer Riazuddin 2016-03-31
PXD003583 Genome-wide profiling of SWI/SNF chromatin remodeler BRAHMA and Histone H3 lysine demethyalse Relative of Early Flowering 6 (REF6) in Arabidopsis PRIDE Arabidopsis thaliana (Mouse-ear cress) Q Exactive Dataset with its publication pending Zhiyong Wang Zhi-yong Wang 2016-03-31
PXD003344 Plug-and-play analysis of the human phosphoproteome by targeted high-resolution mass spectrometry MassIVE Homo sapiens Q Exactive Robert T. Lawrence, Brian C. Searle, Ariadna Llovet, Judit Villén. Plug-and-play analysis of the human phosphoproteome by targeted high-resolution mass spectrometry. Nature Methods. 2016 Mar. doi: 10.1038/nmeth.3811. Robert Lawrence Judit Villén 2016-03-27
PXD003337 Longitudinal quantification of the GCF proteome during progression from gingivitis to periodontitis in a canine model PRIDE Canis familiaris (Canis lupus familiaris) LTQ Orbitrap Velos Davis et al. (2016) Melissa Grant Melissa M Grant 2016-03-21
PXD001622 Elucidating the Linezolid response of Staphylococcus aureus USA300 (metabolic labelling) PRIDE Staphylococcus aureus (strain USA300) LTQ Orbitrap Bonn et al. (2016) Florian Bonn Dörte Becher 2016-03-21
PXD003028 Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome PRIDE Homo sapiens Q Exactive Grassl et al. (2016) Niklas Grassl Matthias Mann 2016-03-18
PXD002215 Tobacco pollen tube-secretome following penetration through the pistil PRIDE Nicotiana tabacum (Common tobacco) LTQ Orbitrap Elite Dataset with its publication pending David Potesil Zbynek Zdrahal 2016-03-18
PXD003115 PGRC Cancer Proteome Study of Gastric Tissue PRIDE Homo sapiens Q Exactive Park et al. (2015) Dong-Gi Mun Sang-Won Lee 2016-03-18
PXD001659 Elucidating the Linezolid response of Staphylococcus aureus USA300 (Hi3 quantification) PRIDE Staphylococcus aureus Synapt MS Bonn et al. (2016) Florian Bonn Dörte Becher 2016-03-18
PXD001774 Proteomic Analysis to Reveal the Role of Phosphoproteins in Rice Nucleus during Early Stage of Germination PRIDE Rice(O. sativa) LTQ Orbitrap Li et al. (2015) xiaojian Yin Professor Setsuko Komatsu 2016-03-17
PXD000589 Cell Surface Protein Atlas PRIDE Homo sapiens , Mus musculus LTQ Orbitrap; LTQ FT Bausch-Fluck et al. (2015) Damaris Bausch-Fluck Bernd Wollscheid 2016-03-16
PXD003466 Identification of proteins stably associated with G9a/GLP (EHMT2/EHMT1) complex of histone methyltransferases PRIDE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Irina Stancheva Dr.Irina Stancheva 2016-03-16
PXD001023 Global protein oxidation profiling suggests efficient mitochondrial proteome homeostasis during ageing PRIDE Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) LTQ Orbitrap Velos Ramallo Guevara et al. (2016) Ansgar Poetsch Carina Ramallo Guevara 2016-03-16
PXD002886 Identification of a novel interaction between corticotropin releasing hormone (Crh) and macroautophagy PRIDE Mus musculus LTQ Orbitrap Elite Giannogonas et al. (2016) Spiro Garbis Spiros D. Garbis 2016-03-15
PXD003298 Proteomic Analysis of Urinary Extracellular Vesicles PRIDE Homo sapiens Q Exactive Salih et al. (2016) Jeroen Demmers Jeroen Demmers 2016-03-15
PXD003755 Thermal acclimation in Drosophila melanogaster PRIDE Drosophila melanogaster (Fruit fly) Q Exactive 10.1242/jeb.132696 Henrik Kjeldal Jeppe Lund Nielsen 2016-03-15
PXD002606 Evening Complex associated proteins in Arabidopsis by AP-MS PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Huang et al. (2016) Alvarez Sophie Dmitri Nusinow 2016-03-15
PXD003541 Fungi contribute critical but spatially varying roles in nitrogen and carbon cycling in acidic environments PRIDE uncultured microorganism LTQ Orbitrap Velos Mosier et al. (2016) Zhou Li Chongle Pan 2016-03-15
PXD003689 A proteome analysis of freezing tolerance in red clover (Trifolium pratense L.) PRIDE Trifolium pratense subsp. pratense 4800 Proteomics Analyzer Bertrand et al. (2016) Jenny Renaut Jenny Renaut 2016-03-15
PXD003524 Proteomic analysis of liver proteome affected by intrauterine growth restriction in newborn piglets. PRIDE Sus scrofa domesticus (domestic pig) Q Exactive Long et al. (2016) Baisheng Long Xianghua Yan 2016-03-15
PXD000762 Phosphoproteomic analyses reveal that galectin-1 augments the dynamics of B-cell receptor signaling PRIDE Mus musculus LTQ Orbitrap Tsai et al. (2014) Hsin-Yi Wu Yu-Ju Chen 2016-03-15
PXD003176 Unique insights in cervicovaginal Lactobacillus iners and L. crispatus proteome changes associated with microbiome dysbiosis PRIDE Homo sapiens , Lactobacillus crispatus, Lactobacillus iners LTQ Orbitrap Velos Borgdorff et al. (2016) Stuart Armstrong Julian Hiscox 2016-03-14
PXD003075 Human CSF peptidomics of gamma secretase inhibition PRIDE Homo sapiens Q Exactive Hölttä et al. (2016) Johan Gobom Johan Gobom 2016-03-14
PXD002986 Proteomics of Mycobacterium tuberculosis Beijing genotype after acquisition of Isoniazid resistance PRIDE Mycobacterium tuberculosis H37Rv LTQ Nieto R, Mehaffy & Dobos (2016) Luisa Nieto Karen M. Dobos 2016-03-14
PXD003132 Citrullination of latency-associated peptide of TGF beta1 PRIDE Homo sapiens Q Exactive Sipilä et al. (2016) Pekka Rappu Jyrki Heino 2016-03-14
PXD003534 Adjuvant Secretomes PRIDE Homo sapiens Q Exactive Oh et al. (2016) Sebastian Berger Hanno Steen, Ofer Levy 2016-03-14
PXD003586 Pasteurella multocida Hfq mutant PRIDE Pasteurella multocida subsp. multocida str. Pm70 Q Exactive Mégroz et al. (2016) Oded Kleifeld John Boyce 2016-03-14
PXD002091 Positional proteomics reveals differences in N-terminal proteoform stability. PRIDE Homo sapiens LTQ Orbitrap Velos Gawron et al. (2016) Daria Gawron Prof. Dr. Kris Gevaert 2016-03-14
PXD002039 Expression dynamics in mammalian cells responding to protein misfolding stress PRIDE Homo sapiens LTQ Orbitrap Velos Cheng et al. (2016) Zhe Cheng Christine Vogel 2016-03-14
PXD003224 Proteomic analysis of sweat samples from tuberculosis patients PRIDE Homo sapiens LTQ Orbitrap Velos Adewole et al. (2016) Lisa Wolfe Jessica E. Prenni 2016-03-14
PXD002514 Intact Protein extraction using Liquid extraction surface analysis (LESA) PRIDE Rattus norvegicus Q Exactive Wisztorski et al. (2016) Maxence Wisztorski Michel Salzet 2016-03-14
PXD001925 Intact Protein extraction using Liquid extraction surface analysis (LESA) PRIDE Rattus norvegicus Q Exactive Wisztorski et al. (2016) Maxence Wisztorski Michel Salzet 2016-03-14
PXD003744 MicroRNA-124 and -137 cooperativity controls caspase-3 activity through BCL2L13 in hippocampal neural stem cells. PRIDE Mus musculus LTQ FT Dataset with its publication pending Sander Piersma Connie Ramona Jimenez 2016-03-14
PXD003521 Identification of Cypermethrin Induced Proteins Changes in Green Algae by iTRAQ Quantitative Proteomics PRIDE Chlorella vulgaris (Green alga) TripleTOF 5600 Gao et al. (2016) Yan Gao LI Fong Yau Sam 2016-03-14
PXD002625 StoS and SreKRS iTRAQ profiling PRIDE Xanthomonas oryzae pv. oryzae (strain PXO99A) TripleTOF 5600 Zheng et al. (2016) lifang ruan Lifang Ruan 2016-03-14
PXD002657 Characterization of various cell lines from different ampullary cancer subtypes and cancer associated fibroblast-mediated responses PRIDE Homo sapiens LTQ Orbitrap; Q Exactive Lai et al. (2016) Zon Lai Oliver Schilling 2016-03-14
PXD003439 Proteome profiling of Bacillus subtilis stressed with the antibiotics tetracycline and chelocardin PRIDE Bacillus subtilis subsp. subtilis str. 168 Synapt MS Stepanek et al. (2016) Jennifer Stepanek Julia Elisabeth Bandow 2016-03-14
PXD001981 Secretome of P2X7 receptor PRIDE Mus musculus Thermo Finnigan instrument model de Torre-Minguela et al. (2016) Carlos de Torre Minguela Carlos de Torre Minguela 2016-03-11
PXD002391 Proteomics Study of Molecular Mechanisms Involved in Early Pregnancy Loss PRIDE Homo sapiens Q Exactive Xin et al. (2016) Wei Ge Wei Ge 2016-03-11
PXD003371 Proteome identification of the silkworm middle silk gland PRIDE Bombyx mori (Silk moth) LTQ Orbitrap Li et al. (2015); Li et al. (2016) Jian-ying Li Boxiong Zhong 2016-03-11
PXD003495 Compensating the fitness costs of synonymous mutations PRIDE Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) Q Exactive Knöppel, Näsvall & Andersson (2016) Carina Sihlbom Carina Sihlbom 2016-03-11
PXD003081 Proteomic Dataset of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor PRIDE Dehalococcoides mccartyi (strain CBDB1) Q Exactive Schiffmann et al. (2016) Christian Schiffmann Martin von Bergen 2016-03-11
PXD002010 Natural genetic variation on proteome level in Caenorhabditis elegans PRIDE Caenorhabditis elegans LTQ Orbitrap Kamkina et al. (2016) Polina Kamkina Michael Otmar Hengartner 2016-03-11
PXD003342 C-terminomics E. coli PRIDE Escherichia coli LTQ Orbitrap Velos; Q Exactive Somasundaram et al. (2016) Andreas Tholey Andreas Tholey 2016-03-11
PXD003475 Hypothalamus proteomics from mouse models with obesity and anorexia reveals novel therapeutic targets of appetite regulation PRIDE Mus musculus LTQ Orbitrap Elite Manousopoulou et al. (2016) Spiro Garbis Spiros D. Garbis 2016-03-11
PXD003391 LC-MS/MS analysis of B12 treated SH-SY5Y cells MassIVE Homo sapiens LTQ Orbitrap Velos Zhong et al. (2016) Juntuo Zhou Lijun Zhong, Juntuo Zhou, Yuxin Yin, Yan Pan 2016-03-10
PXD003767 AMCA chromophore tagging and 351 nm ultraviolet photodissociation enables de novo sequencing of E. coli proteome MassIVE Escherichia coli instrument model: Thermo Scientific Velos Pro mass spectrometer modified to enable 351 nm UVPD Robotham et al. (2016) Andrew Horton Jennifer Brodbelt, Edward Marcotte 2016-03-10
PXD003251 Comparative proteomics identifies host immune system proteins affected by infection with Mycobacterium bovis PRIDE Sus scrofa LTQ López et al. (2016) Margarita Villar Margarita Villar 2016-03-10
PXD000659 The circadian clock output deubiquitylating enzyme USP2-45 regulates intestinal Ca2+ absorption PRIDE Mus musculus LTQ Orbitrap Velos Pouly et al. (2016) Daniel Pouly Olivier Staub 2016-03-02
PXD002284 New nodes and edges in the glucosinolate molecular network revealed by proteomics and metabolomics of Arabidopsis myb28/29 and cyp79B2/B3 PRIDE Arabidopsis thaliana (Mouse-ear cress) Q Exactive Mostafa et al. (2016) Ning Zhu Sixue Chen 2016-03-01
PXD003678 Dam1 complex-microtubule interaction PRIDE Candida albicans LTQ Orbitrap Velos Legal et al. (2016) Juan Zou Prof. Juri Rappsilber 2016-03-01
PXD003327 Known ratios of SILAC labels in E. Coli PRIDE Escherichia coli LTQ Orbitrap Elite Dataset with its publication pending Akhilesh Pandey Akhilesh Pandey 2016-03-01
PXD003577 Open-Gate Mutants of the Mammalian Proteasome Show Enhanced Ubiquitin-Conjugate Degradation PRIDE Homo sapiens Orbitrap Fusion Choi et al. (2016) Min Jae Lee Min Jae Lee 2016-03-01
PXD002640 Protein complex map of Trypanosoma brucei PRIDE Trypanosoma brucei Orbitrap Fusion ETD; LTQ Gazestani et al. (2016) Reza Salavati Reza Salavati 2016-02-29
PXD002997 Proteome analysis of Bordetella pertussis isolated from human macrophages PRIDE Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) LTQ Orbitrap Velos Lamberti et al. (2016) Kristin Surmann Frank Schmidt 2016-02-29
PXD002624 In vivo protein-protein interaction in C. elegans early embryos PRIDE Caenorhabditis elegans LTQ Orbitrap Velos; Q Exactive Chen et al. (2016) Jia-Xuan Chen Matthias Selbach 2016-02-29
PXD001652 Mitochondrial Protein Hyperacetylation in the Failing Heart PRIDE Mus musculus LTQ Orbitrap Elite Dataset with its publication pending Ola Martin Daniel P. Kelly; Joshua J. Coon 2016-02-26
PXD003441 Mouse retina proteomics PRIDE Mus musculus Q Exactive Zhao et al. (2016) Li Zhao Rui Chen 2016-02-26
PXD002481 Pig embryonic muscle iTRAQ analysis PRIDE Sus scrofa domesticus (domestic pig) LTQ Orbitrap Zhang et al. (2016) Xumeng Zhang Xumeng Zhang 2016-02-26
PXD003116 AP-MS of different isoforms of Axin PRIDE Homo sapiens LTQ Orbitrap Elite Dataset with its publication pending Teck Yew Low Albert J.R. Heck 2016-02-26
PXD003646 Inflammatory signaling in human Tuberculosis granulomas is spatially organized PRIDE Homo sapiens Q Exactive Marakalala et al. (2016) Mario Oroshi Matthias Mann 2016-02-26
PXD001563 A phosphoproteomic comparison of B-RAFV600E and MKK1/2 inhibitors in melanoma cells, part 2 PRIDE Homo sapiens LTQ Orbitrap Velos Stuart et al. (2015) Scott Stuart Natalie G. Ahn 2016-02-25
PXD001560 A phosphoproteomic comparison of B-RAFV600E and MKK1/2 inhibitors in melanoma cells, part 1 PRIDE Homo sapiens LTQ Orbitrap Velos Stuart et al. (2015) Scott Stuart Natalie G. Ahn 2016-02-25
PXD003130 Sexual crossing of thermophilic fungus Myceliophthora heterothallica improved enzymatic degradation of sugar beet pulp PRIDE Myceliophthora heterothallica Q Exactive Aguilar-Pontes et al. (2016) Maria Victoria Aguilar Pontes Ronald P. de Vries 2016-02-25
PXD000938 TARA Oceans Viral Proteins PRIDE environmental samples LTQ Orbitrap; LTQ Orbitrap Velos; Q Exactive Brum et al. (2016) Robert Jones Matthew B. Sullivan 2016-02-25
PXD003113 Stoichiometry of the bacterial type III secretion export apparatus PRIDE Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 Q Exactive; LTQ Orbitrap Elite Zilkenat et al. (2016) Nicolas Nalpas Samuel Wagner 2016-02-25
PXD000859 Genetic predisposition for beta cell fragility underlies type 1 and type 2 diabetes PRIDE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Jonathan Vandenbussche Kris Gevaert 2016-02-24
PXD003002 Morpheus Spectral Counter PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Gemperline et al. (2016) David C Gemperline Richard D. Vierstra 2016-02-24
PXD002291 Rice (Oryza sativa) lysine-acetylation LC-MS/MS PRIDE Rice(O. sativa) Q Exactive Xiong et al. (2016) jun zhu Wende Liu 2016-02-24
PXD002769 How C/EBPa creates an elite cell state for reprogramming to pluripotency PRIDE Mus musculus Q Exactive Dataset with its publication pending Michael Wierer Matthias Mann 2016-02-24
PXD003680 The venom proteome of the Pacific sea nettle, Chrysaora fuscescens MassIVE Chrysaora fuscescens TripleTOF 5600 Dataset with its publication pending Jason Mulvenna Jason Mulvenna 2016-02-23
PXD002189 iiTRAQ protein profiles of petunia seedlings in response to cold stress PRIDE Petunia hybrida Q Exactive Zhang et al. (2016) xu cheng Wei Zhang 2016-02-23
PXD002548 Inner membrane proteome of E. coli Min mutant PRIDE Escherichia coli LTQ Orbitrap Elite Lee et al. (2016) Yu-Ling Shih Yu-Ling Shih 2016-02-23
PXD003000 Chemoproteomic profiling of host and pathogen enzymes active in cholera PRIDE Vibrio cholerae O1 str. VC91 LTQ Orbitrap Hatzios et al. (2016) Eranthie Weerapana Eranthie Weerapana 2016-02-22
PXD002854 Plasma proteome profiling to assess human health and disease PRIDE Homo sapiens Q Exactive Dataset with its publication pending Mario Oroshi Matthias Mann 2016-02-22
PXD002645 Proteomic profiling of ubiquitylated proteins in urinary exosomes PRIDE Homo sapiens Q Exactive Huebner et al. (2016) Trairak Pisitkun Trairak Pisitkun 2016-02-22
PXD002057 Proteomic analysis identifies novel pathways linking epithelial-to-mesenchymal transition with resistance to HER2-targeted therapy PRIDE Homo sapiens Q Exactive Creedon et al. (2016) Thierry Le Bihan Thierry Le Bihan 2016-02-22
PXD001861 platelet hyperreactivity project PRIDE Homo sapiens LTQ Orbitrap Velos Zufferey et al. (2016) Pierre Fontana Pierre Fontana 2016-02-22
PXD002648 De-novo synthesized targets of NMD and ER stress PRIDE Homo sapiens LTQ Orbitrap Velos Sieber et al. (2016) Jana Sieber Andreas E. Kulozik 2016-02-22
PXD001997 Protein accumulation post-LASIK surgery in granular corneal dystrophy type II patients involves altered proteolytic processing of transforming growth factor beta-induced protein (TGFBIp) PRIDE Homo sapiens TripleTOF 5600 Poulsen et al. (2016) Ebbe Toftgaard Poulsen Jan Johannes Enghild 2016-02-19
PXD002673 The challenge of identifying tuberculosis proteins in archaeological tissues PRIDE Homo sapiens maXis Dataset with its publication pending Jessica Hendy Matthew Collins 2016-02-19
PXD003071 Phosphoproteomics reveals that Parkinson’s disease kinase LRRK2 regulates a subset of Rab GTPases PRIDE Homo sapiens , Mus musculus LTQ Orbitrap; Q Exactive Steger et al. (2016) Martin Steger Matthias Mann 2016-02-19
PXD002724 Analysis of proteins that rapidly change upon mTORC1 repression identifies Park7 as a novel protein aberrantly expressed in Tuberous Sclerosis Complex PRIDE Rattus rattus (Black rat) LTQ Orbitrap Velos Niere et al. (2016) Rui Zhu Yehia Mechref 2016-02-19
PXD002398 Quantitative proteomics of host-parasite interactions in Giardia duodenalis PRIDE Giardia intestinalis assemblage A Q Exactive Emery et al. (2016) Samantha Emery Professor Paul Haynes 2016-02-19
PXD001778 Quantitative Proteomics Reveals Metabolic Differences in Homing and Non-Homing Glioma Stem Cell Xenografts and Stromal Cells PRIDE Homo sapiens , Mus musculus , Homo sapiens/Mus musculus xenograft LTQ Orbitrap Elite 10.1016/j.euprot.2015.06.006 Norelle Wildburger Carol L. Nilsson 2016-02-17
PXD002766 Arginine sensing in Leishmania PRIDE Leishmania donovani LTQ Orbitrap Dataset with its publication pending Keren Bendalak Dan Zilberstein 2016-02-17
PXD002573 Translational regulation via ribosome modification PRIDE Pseudomonas fluorescens (strain SBW25) Orbitrap Fusion Little et al. (2016) Gerhard Saalbach Dr Jacob George Malone 2016-02-17
PXD001376 Global control of bacterial translation by a specific ribosomal modification PRIDE Pseudomonas fluorescens (strain SBW25) LTQ Orbitrap Little et al. (2016) Gerhard Saalbach Jacob George Malone 2016-02-17
PXD001371 Global control of bacterial translation by a specific ribosomal modification PRIDE Pseudomonas fluorescens (strain SBW25) LTQ Orbitrap Little et al. (2016) Gerhard Saalbach Jacob George Malone 2016-02-17
PXD002660 Apostichopus japonicus intestine LC-MS/MS PRIDE Stichopus japonicus (Sea cucumber) TripleTOF 5600 Xu et al. (2016) Dongxue Xu Dongxue Xu 2016-02-17
PXD003514 SILAC-based quantitative Nox4-Co-immunoprecipitation PRIDE Homo sapiens Q Exactive Prior et al. (2016) Ilka Wittig Ralf Brandes 2016-02-16
PXD003442 Integrated genomics and proteomics to define huntingtin CAG length-dependent molecular networks in HD mouse brains PRIDE Mus musculus Q Exactive Langfelder et al. (2016) Christoph Schaab Christoph Schaab 2016-02-16
PXD003649 Bacterial Interactomes: Desulfovibrio vulgaris_TAP_part 2_LTQ Data MassIVE Desulfovibrio vulgaris str. Hildenborough LTQ XL Dataset with its publication pending Witkowska Gareth Butland 2016-02-16
PXD003648 Bacterial Interactomes: Desulfovibrio vulgaris_TAP_part 3_QSTAR Data MassIVE Desulfovibrio vulgaris str. Hildenborough QSTAR XL Dataset with its publication pending Witkowska Gareth Butland 2016-02-16
PXD003647 Bacterial Interactomes: Desulfovibrio vulgaris_TAP_part 1_Orbitrap Data MassIVE Desulfovibrio vulgaris str. Hildenborough LTQ Orbitrap Velos Dataset with its publication pending Witkowska Gareth Butland 2016-02-16
PXD001952 Multi-omics approach to identify age-related changes in mesenchymal stem cells PRIDE Homo sapiens LTQ Orbitrap Velos Peffers et al. (2016) Mandy Peffers Mandy J Peffers 2016-02-16
PXD002369 Selective labeling and eradication of antibiotic tolerant bacterial populations in pathogenic biofilms PRIDE Pseudomonas aeruginosa PAO1H2O Q Exactive Chua et al. (2016) Sunil Adav Siu Kwan Sze 2016-02-16
PXD002936 The Proteome of the Infectious Bronchitis Virus Beau-R Virion PRIDE Avian infectious bronchitis virus (strain Beaudette CK) LTQ Orbitrap Velos Dataset with its publication pending Dong Xia Jonathan M Wastling 2016-02-15
PXD002372 Urinary polypeptide ETD/CID analysis, part 3 PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending Sarah Hart Sarah Ruth Hart 2016-02-15
PXD002346 Urinary polypeptide ETD/CID analysis, part 2 PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending Sarah Hart Sarah Hart 2016-02-15
PXD002312 Urinary polypeptide ETD/CID analysis, part 1 PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending Sarah Hart Sarah Hart 2016-02-15
PXD002787 Developmental alcohol exposure leads to a persistent change on astrocyte secretome PRIDE Mustela putorius furo (European domestic ferret) (Mustela furo) TripleTOF 5600 Trindade et al. (2016) Pablo Trindade Alexandre E. Medina de Jesus, D.Sci. 2016-02-15
PXD003465 Changes over lactation in breast milk serum proteins. PRIDE Homo sapiens LTQ Orbitrap Zhang et al. (2016) Sjef Boeren Sjef Boeren 2016-02-12
PXD003048 Cell-specific analysis of tumour-endothelial contact-intiated signalling - PROTEOMICS PRIDE Homo sapiens LTQ Orbitrap Velos; Q Exactive Locard-Paulet et al. (2016) Marie Locard-Paulet Claus Jorgensen 2016-02-12
PXD001558 Cell-specific analysis of tumour-endothelial contact-intiated signalling PRIDE Homo sapiens LTQ Orbitrap Velos Locard-Paulet et al. (2016) Marie Locard-Paulet Claus Jorgensen 2016-02-12
PXD003573 The Rab-binding profiles of Legionella effectors PRIDE Homo sapiens Q Exactive So et al. (2016) Ernest So Gad Frankel 2016-02-11
PXD003257 Proteomic comparison defines novel markers to characterize heterogeneous populations of extracellular vesicle subtypes PRIDE Homo sapiens LTQ Orbitrap; Orbitrap Fusion Kowal et al. (2016) Guillaume Arras Damarys Loew 2016-02-11
PXD003605 Global proteomics comparison of HFO, Fe-citrate, Pyruvate, and Sulfate Desulfotomaculum reducens cultures MassIVE Desulfotomaculum reducens MI-1 LTQ Orbitrap Velos; LTQ Orbitrap Dataset with its publication pending Matthew Monroe Ruth E Richardson (Cornell) 2016-02-09
PXD003387 Proteomic analysis of glutamine deprivation in HepG2 cells PRIDE Homo sapiens Q Exactive Long et al. (2016) Baisheng Long Xianghua Yan 2016-02-09
PXD002456 Phosphoproteomic analysis of endothelial cells treated with VEGF and Ang-1 PRIDE Bos taurus LTQ Orbitrap Velos Chidiac et al. (2016) Rony Chidiac Jean-Philippe Gratton 2016-02-09
PXD003352 Tandem affinity purification and Mass spectrometry (TAP-MS) analysis of PCH1’s associated proteins in various Arabidopsis genetic backgrounds. PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Huang et al. (2016) Sophe Alvarez Meter Nusinow 2016-02-09
PXD002054 Bank Vole Protein Turnover Study PRIDE Myodes glareolus (Bank vole) (Clethrionomys glareolus), Mus musculus Q Exactive Hammond et al. (2016) Dean Hammond Robert John Beynon 2016-02-09
PXD001856 Comprehensive transcriptomic and proteomic characterization of human mesenchymal stem cells reveals source specific cellular markers PRIDE Homo sapiens Q Exactive Billing et al. (2016) Johannes Graumann Johannes Graumann 2016-02-09
PXD001731 Large-Scale Targeted Proteomics Using Internal Standard Triggered-Parallel Reaction Monitoring PRIDE Homo sapiens Q Exactive Gallien, Kim & Domon (2015) Sebastien Gallien Bruno Domon 2016-02-09
PXD002295 Poor preservation of antibodies in archaeological human bone and dentine PRIDE Homo sapiens QSTAR; Q Exactive Dataset with its publication pending Jessica Hendy Matthew Collins 2016-02-08
PXD002979 Equine tendon LC-MSMS PRIDE Equus caballus Q Exactive Thorpe et al. (2016) Deborah Simpson Dr ChavaunneThorpe 2016-02-08
PXD002425 An impaired respiratory electron chain triggers down-regulation of the energy metabolism and de-ubiquitination of solute carrier amino acid transporters PRIDE Homo sapiens Q Exactive Gielisch et al. (2016) Ina Gielisch David Meierhofer 2016-02-08
PXD003014 Human DNA Mismatch Repair pathway LC-MSMS PRIDE Homo sapiens LTQ Orbitrap Elite Chen et al. (2016) Zhen Chen Junjie Chen 2016-02-08
PXD002101 SIMPLEX a multimolecular omics approach for systems biology PRIDE Mus musculus Q Exactive; Orbitrap Fusion Coman et al. (2016) Fiorella Andrea Solari Robert Ahrends 2016-02-08
PXD003155 Atxn2-Knock-Out mice show branched chain amino acids and fatty acids pathway alterations PRIDE Mus musculus Q Exactive Meierhofer et al. (2016) David Meierhofer David Meierhofer 2016-02-08
PXD002460 Context-dependent regulatory mechanisms control site-specific information processing within the MEK/ERK module PRIDE Homo sapiens Q Exactive Iwamoto et al. (2016) Sajib Chakraborty Marcel Schilling 2016-02-08
PXD003037 Systemic remodeling of translation efficiencies on oxygen stimulus. PRIDE Homo sapiens LTQ Orbitrap; LTQ Orbitrap Elite Ho et al. (2016) Jonathan Krieger Stephen Lee 2016-02-05
PXD003319 Quantitative proteomics uncovers novel factors involved in developmental differentiation of Trypanosoma brucei PRIDE Trypanosoma brucei Q Exactive Dejung et al. (2016) F Butter Falk Butter 2016-02-04
PXD003171 Host-microbiota interactions in the pathogenesis of antibiotic-associated diseases: DSS PRIDE Mus musculus LTQ Orbitrap Velos Lichtman et al. (2016) Joshua Elias Joshua E Elias 2016-02-04
PXD003170 Host-microbiota interactions in the pathogenesis of antibiotic-associated diseases:Fecal Transplant PRIDE Mus musculus LTQ Orbitrap Velos Lichtman et al. (2016) Joshua Elias Joshua E Elias 2016-02-04
PXD003169 Host-microbiota interactions in the pathogenesis of antibiotic-associated diseases:C. difficile infection PRIDE Mus musculus LTQ Orbitrap Velos Lichtman et al. (2016) Joshua Elias Joshua E Elias 2016-02-04
PXD003168 Host-microbiota interactions in the pathogenesis of antibiotic-associated diseases: Clindamycin PRIDE Mus musculus LTQ Orbitrap Velos Lichtman et al. (2016) Joshua Elias Joshua E Elias 2016-02-04
PXD003167 Host-microbiota interactions in the pathogenesis of antibiotic-associated diseases:Control for Cln, C. diff, Fecal Transplant PRIDE Mus musculus LTQ Orbitrap Velos Lichtman et al. (2016) Joshua Elias Joshua E Elias 2016-02-04
PXD003152 Host-microbiota interactions in the pathogenesis of antibiotic-associated diseases:Streptomycin plus Salmonella PRIDE Mus musculus LTQ Orbitrap Velos Lichtman et al. (2016) Joshua Elias Joshua E Elias 2016-02-04
PXD002194 The proteome of normal human iris, ciliary body, retinal pigment epithelium, and choroid PRIDE Homo sapiens LTQ Orbitrap Elite Zhang et al. (2016) Pingbo Zhang Richard D. Semba 2016-02-04
PXD002811 Peptide recovery from acid-precipitated sodium deoxycholate pellet PRIDE Homo sapiens LTQ FT Serra et al. (2016) Aida Serra Siu Kwan Sze 2016-02-04
PXD002494 Identification of GLI-associated proteins by mass spectrometry PRIDE Mus musculus LTQ Orbitrap; LTQ Li et al. (2016) Maria Person Steven A. Vokes 2016-02-04
PXD002123 Pleiotropic effect of Francisella ABC transporter gene inactivation on production of glycoconjugates PRIDE Francisella tularensis subsp. holarctica FSC200 Q Exactive Dankova et al. (2016) Lucie Balonova Jiri Stulik 2016-02-03
PXD003571 THP_1 and human fibroblast secretomes MassIVE Homo sapiens LTQ Orbitrap Elite Dataset with its publication pending Yong-Sam Kim Yong-Sam Kim 2016-02-03
PXD003478 Human AML secretome and exosomes and correlation with Anti-Apoptotic Index, part 4 PRIDE Homo sapiens Q Exactive Wojtuszkiewicz et al. (2016) Sander Piersma Connie Ramona Jimenez 2016-02-03
PXD001487 Human AML secretome and exosomes and correlation with Anti-Apoptotic Index, part 3 PRIDE Homo sapiens Q Exactive Wojtuszkiewicz et al. (2016) Sander Piersma Connie Ramona Jimenez 2016-02-03
PXD003471 Human AML secretome and exosomes and correlation with Anti-Apoptotic Index, part 2 PRIDE Homo sapiens LTQ FT Wojtuszkiewicz et al. (2016) Sander Piersma Connie Ramona Jimenez 2016-02-03
PXD001476 Human AML secretome and correlation with Anti-Apoptotic Index, part 1 PRIDE Homo sapiens LTQ FT Wojtuszkiewicz et al. (2016) Thang Pham Connie Ramona Jimenez 2016-02-03
PXD002963 Proteome profile of coffee embryogenic cell suspensions PRIDE Coffea arabica (Arabian coffee) Q Exactive Campos et al. (2016) Nadia Campos Sebastien Carpentier 2016-02-03
PXD003095 Identification of the novel function of adipocyte plasma membrane associated protein (APMAP) in gestational diabetes mellitus by proteomic analysis of omental adipose tissues PRIDE Homo sapiens Q Exactive Ma et al. (2016) Xing Liu Hu Zhou 2016-02-02
PXD002720 Proteomic analysis of integrin-associated adhesion complexes isolated from cells treated with DMSO or FAK inhibitor PRIDE Homo sapiens LTQ Orbitrap Elite Horton et al. (2016) Edward Horton Martin J. Humphries 2016-02-02
PXD003077 Identification of Fic substrates in bacteria PRIDE Escherichia coli, Pseudomonas fluorescens TripleTOF 5600 Lu et al. (2016) Ernesto Nakayasu Ernesto S. Nakayasu 2016-02-01
PXD003076 Identification of Pseudomanas fluorescens Fic auto-AMPylation site PRIDE Escherichia coli, Pseudomonas fluorescens TripleTOF 5600 Lu et al. (2016) Ernesto Nakayasu Ernesto S. Nakayasu 2016-02-01
PXD002957 Methyltioadenosine regulates liver cells proteome and methylproteome. Implications in liver biology and disease. PRIDE Homo sapiens TripleTOF 5600 Bigaud & Corrales (2016) Emilie Bigaud Fernando J Corrales 2016-02-01
PXD001429 Carbonylation proteome of rice embryo PRIDE Rice(O. sativa) TripleTOF 5600 Zhang et al. (2016) Zhang Hui Pingfang Yang 2016-02-01
PXD002145 Towards understanding male infertility after spinal cord injury through quantitative proteomics PRIDE Homo sapiens LTQ Orbitrap XL ETD; LTQ Orbitrap Elite da Silva et al. (2016) Dominic Helm Dominic Helm 2016-02-01
PXD002763 A Survey of Serine Hydrolase Activity in Mycobacterium tuberculosis PRIDE Mycobacterium tuberculosis LTQ Orbitrap Ortega et al. (2016) Matthew Monroe Aaron T. Wright 2016-02-01
PXD003267 Changes in the plasma proteome of Manduca sexta larvae in relation to the transcriptome variations after an immune challenge: evidence for high molecular weight immune complex formation PRIDE Manduca sexta (Tobacco hawkmoth) (Tobacco hornworm) LTQ Orbitrap Elite He et al. (2016) Xiaolong Cao Haobo Jiang 2016-02-01
PXD003502 Cross-linking mass spectrometric analysis of Ska-MT interactions PRIDE Homo sapiens LTQ Orbitrap Velos Abad et al. (2014) Juan Zou Juri Rappsilber 2016-01-28
PXD002561 Identification of cell cycle dependent interaction partners of the septins by quantitative mass spectrometry PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Renz et al. (2016) Friedel Drepper Thomas Gronemeyer 2016-01-28
PXD003438 SCX_MS raw files and RP_MS raw files PRIDE Homo sapiens , Mus musculus Q Exactive Xu et al. (2016) mai dier Hu Zhou 2016-01-28
PXD002806 Proteomic analysis of Rhizoctonia solani PRIDE Rhizoctonia solani AG-8 WAC10335 LTQ Orbitrap Velos Anderson et al. (2016) Jonathan Anderson Karam Singh 2016-01-28
PXD001898 Global proteogenomic analysis of human MHC I peptides derived from non­canonical reading frames PRIDE Homo sapiens LTQ Orbitrap Elite Laumont et al. (2016) Olivier Caron-Lizotte Olivier Caron-Lizotte 2016-01-28
PXD002671 Tandem affinity purification of histones, coupled to mass spectrometry, identifies new sites of post-translational modification and associated proteins in Saccharomyces cerevisiae PRIDE Saccharomyces cerevisiae (Baker's yeast) TripleTOF 5600 Valero, Sendra & Pamblanco (2016) Luz Valero Mercè Pamblanco 2016-01-28
PXD003029 CD147 mutants affinity purification mass spectrometry from human T cells PRIDE Homo sapiens LTQ Velos; LTQ Orbitrap Velos Supper et al. (2016) Goran Mitulović Verena Supper 2016-01-28
PXD001164 Active DNA demethylation during the vertebrate phylotypic period PRIDE Danio rerio (Brachydanio rerio) Q Exactive; LTQ Orbitrap Velos Bogdanović et al. (2016) A.H. Smits Michiel Vermeulen 2016-01-27
PXD001969 Mps1 Phosphorylation of the Molecular Chaperone Hsp90 Regulates Mitotic Checkpoint PRIDE Saccharomyces cerevisiae (Baker's yeast) Q Exactive Woodford et al. (2016) Donald Wolfgeher Mehdi Mollapour PhD 2016-01-27
PXD002030 Trypanosoma brucei extracellular vesicles PRIDE Trypanosoma brucei Q Exactive Szempruch et al. (2016) Ernesto Nakayasu Igor C. Almeida 2016-01-27
PXD003445 In vitro chromatin assembly PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap Elite Voelker-Albert et al. (2016) Moritz Voelker-Albert Axel Imhof 2016-01-27
PXD002537 A quantitative proteomic analysis of in vitro assembled chromatin PRIDE Drosophila melanogaster (Fruit fly) TripleTOF 6600; LTQ Orbitrap Voelker-Albert et al. (2016) Andreas Schmidt Axel Imhof 2016-01-27
PXD003042 Phosphoproteomics profiling of tobacco mature pollen and pollen activated in vitro PRIDE Saccharomyces cerevisiae (Baker's yeast), Nicotiana tabacum (Common tobacco) LTQ Orbitrap Elite Fila et al. (2016) Julia Maria Burkhart René Zahedi 2016-01-27
PXD002771 Proteomic analysis of prothoracic glands of the silkworm Bombyx mori PRIDE Bombyx mori (Silk moth) LTQ Orbitrap Velos Alexandratos et al. (2016) Skarlatos Dedos Skarlatos G. Dedos 2016-01-27
PXD003249 Outer membrane vesicle and outer membrane of Haemophilus influenzae Rd KW20, Rd ∆yrbE and Rd ∆vacJ PRIDE Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) Q-Tof ultima Roier et al. (2016) Stefan Schild Stefan Schild 2016-01-27
PXD001874 Human Hepatocyte Proteome PRIDE Homo sapiens Q Exactive Wiśniewski et al. (2016) Mario Oroshi Wisniewski Jacek R. 2016-01-26
PXD002529 Milk bottom-up proteomics: method optimisation. PRIDE Bos taurus LTQ Orbitrap Velos Vincent et al. (2015) Delphine Vincent Delphine Vincent 2016-01-26
PXD002735 Quantitative Phosphoproteomics Reveals Genistein as a Modulator of Cell Cycle and DNA Damage Response Pathways PRIDE Homo sapiens LTQ Orbitrap Velos Fang et al. (2016) Yi Fang Jing Wang 2016-01-26
PXD002740 Succinylome analyses in the germinating rice seed PRIDE Rice(O. sativa) Q Exactive He et al. (2016) Zhang Hui Yang pingfang 2016-01-26
PXD002739 Acetylome analyses in the germinating rice seed PRIDE Rice(O. sativa) Q Exactive He et al. (2016) Zhang Hui ping fang Yang 2016-01-26
PXD003189 Identification of FLS2 interacting proteins by co-immunoprecipitation and shot gun proteomics PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Mithoe et al. (2016) Jan Sklenar Frank Menke 2016-01-26
PXD001974 Proteome profiling of human myoblastic RCMH cell line PRIDE Homo sapiens LTQ Orbitrap Elite Kollipara et al. (2016) Laxmikanth Kollipara René P. Zahedi 2016-01-26
PXD003378 Changes in the Proteome of Xylem Sap in Brassica oleracea in Response to Fusarium oxysporum Stress PRIDE Brassica oleracea var. capitata LTQ Orbitrap Velos Pu et al. (2016) Daniel Shea Keiichi Okazaki 2016-01-26
PXD002951 Sampling from proteome to HLA-DR ligandome PRIDE Homo sapiens LTQ Orbitrap Elite; TripleTOF 5600 Mommen et al. (2016) Geert Mommen Dr Geert Mommen 2016-01-25
PXD000895 Human hnRNP H1 knockdown proteomics PRIDE Homo sapiens LTQ Orbitrap Velos Uren et al. (2016) Christine Vogel Christine Vogel 2016-01-25
PXD000815 Breast cancer tumors PRIDE Homo sapiens Q Exactive Dataset with its publication pending Tamar Geiger Tamar Geiger 2016-01-25
PXD003434 Homogenization of tissues via picosecond-infrared laser (PIRL) ablation: Giving a closer view on the in-vivo composition of protein species as compared to mechanical homogenization PRIDE Homo sapiens , Rattus norvegicus Q Exactive; Orbitrap Fusion Kwiatkowski et al. (2016) Marcus Wurlitzer Hartmut Schlüter 2016-01-25
PXD003159 Heptad-specific phosphorylation of RNA polymerase II CTD PRIDE Homo sapiens , Mus musculus , Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Schüller et al. (2016) Ignasi Forne Axel Imhof 2016-01-25
PXD003513 HDX-MS of CHIP wt and K30A mutant MassIVE Homo sapiens LTQ Orbitrap Elite Narayan et al. (2015) Vikram Narayan Kathryn L Ball 2016-01-22
PXD003318 Protein acetylation in young versus midlife Drosophila male heads PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap Peleg et al. (2016) Ignasi Forne Axel Imhof 2016-01-22
PXD003507 Mouse dendritic cells proteomics response to West Nile Virus (WNV) MassIVE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Matthew Monroe Yoshihiro Kawaoka, Katrina Waters, Richard Smith and Thomas Metz 2016-01-21
PXD003506 Mouse lung proteomics response to H5N1 (and mutants) and H1N1 Influenza viruses MassIVE Mus musculus LTQ Orbitrap Dataset with its publication pending Matthew Monroe Yoshihiro Kawaoka, Katrina Waters, Richard Smith and Thomas Metz 2016-01-21
PXD003505 Mouse cerebral cortex neurons proteomics response to West Nile Virus (WNV) MassIVE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Matthew Monroe Yoshihiro Kawaoka, Katrina Waters, Richard Smith and Thomas Metz 2016-01-21
PXD003182 Serpinb1 as a novel beta cell growth factor PRIDE Mus musculus LTQ Orbitrap Velos El Ouaamari et al. (2016) Matthew Monroe Weijun Qian 2016-01-21
PXD001992 Hepatitis C-like viruses are produced in cells from rabbit and hare DNA PRIDE Hepatitis C virus 4800 Proteomics Analyzer Silva, Osório & Thompson (2015) Hugo Osorio Hugo Osorio 2016-01-21
PXD002292 Characterization of secretomes from brain microvascular endothelial cells after ischemia PRIDE Homo sapiens maXis Llombart et al. (2015) Víctor Llombart Joan Montaner 2016-01-21
PXD002449 EMT induction in MCF7 cells by overexpression of SNAIL transcription factor PRIDE Homo sapiens LTQ Orbitrap Elite Palma et al. (2016) Vitor Faca Vitor Faca 2016-01-20
PXD003187 Human cTnT fragmentation in serum PRIDE Homo sapiens Q Exactive Streng et al. (2016) Sander Streng Will KWH Wodzig 2016-01-19
PXD003135 rs351855 knock-in Mouse Embryonic Fibroblasts PRIDE Mus musculus LTQ Orbitrap Ulaganathan et al. (2015) Vijay Ulaganathan Vijay Ulaganathan 2016-01-19
PXD003483 Proteome turnover of Arabidopsis root microsomal fraction MassIVE Arabidopsis thaliana Q Exactive Kai-Ting Fan, Aaron K. Rendahl, Wen-Ping Chen, Dana M. Freund, William M. Gray, Jerry D. Cohen, and Adrian D. Hegeman. Proteome scale-protein turnover analysis using high resolution mass spectrometric data from stable-isotope labeled plants. J. Proteome R Kai-Ting Fan Adrian D Hegeman 2016-01-18
PXD003482 Proteome turnover of Arabidopsis root organelle fraction MassIVE Arabidopsis thaliana Q Exactive Kai-Ting Fan, Aaron K. Rendahl, Wen-Ping Chen, Dana M. Freund, William M. Gray, Jerry D. Cohen, and Adrian D. Hegeman. Proteome scale-protein turnover analysis using high resolution mass spectrometric data from stable-isotope labeled plants. J. Proteome R Kai-Ting Fan Adrian D Hegeman 2016-01-18
PXD003481 Proteome turnover of Arabidopsis root soluble fraction MassIVE Arabidopsis thaliana Q Exactive Kai-Ting Fan, Aaron K. Rendahl, Wen-Ping Chen, Dana M. Freund, William M. Gray, Jerry D. Cohen, and Adrian D. Hegeman. Proteome scale-protein turnover analysis using high resolution mass spectrometric data from stable-isotope labeled plants. J. Proteome R Kai-Ting Fan Adrian D Hegeman 2016-01-18
PXD002727 Proteomic profiling of Cryptococcus neoformans PRIDE Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) (Filobasidiella neoformans var. grubii) LTQ Orbitrap Velos Geddes et al. (2016) Jennifer Geddes-McAlister James W. Kronstad 2016-01-18
PXD002515 Temporal analysis of phospho-proteome changes following Rho-kinase inhibition. PRIDE Mus musculus LTQ Orbitrap Velos Kümper et al. (2016) Sandra Kuemper Christopher J. Marshall 2016-01-18
PXD002521 Analysis of total proteome changes upon long-term treatment with Rho kinase inhibitor H1152. PRIDE Mus musculus LTQ Orbitrap Velos Kümper et al. (2016) Sandra Kuemper Christopher J Marshall 2016-01-18
PXD002275 Towards an upgraded honey bee (Apis mellifera L.) genome annotation using proteogenomics. PRIDE Apis mellifera , Homo sapiens , Mus musculus , Saccharomyces cerevisiae (Baker's yeast), Caenorhabditis elegans, Drosophila melanogaster (Fruit fly) Q Exactive; Bruker Daltonics micrOTOF series McAfee et al. (2016) Alison McAfee Leonard James Foster 2016-01-18
PXD003238 Mapping the O-mannose glycoproteome in Saccharomyces cerevisiae PRIDE Saccharomyces cerevisiae (Baker's yeast) Orbitrap Fusion ETD; Orbitrap Fusion Neubert et al. (2016) Adnan Halim Henrik Clausen 2016-01-18
PXD002665 Quantitative phosphoproteomics analysis of ERBB3/ERBB4 signaling PRIDE Mus musculus LTQ Orbitrap Velos Wandinger et al. (2016) Sebastian Wandinger Henrik Daub 2016-01-15
PXD001279 The subcellular proteome of mouse pluripotent embryonic stem cells PRIDE Mus musculus Orbitrap Fusion Christoforou et al. (2016) Andy Christoforou Kathryn S. Lilley 2016-01-14
PXD003461 MassIVE Homo sapiens Q Exactive Higgins et al. (2015) Eric Bennett Eric J Bennett 2016-01-13
PXD000708 Irradiation PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending Paolo Cifani Peter James 2016-01-13
PXD002565 Targeting the lineage-specific long non-coding RNA LINC01212 as an effective anti-melanoma therapeutic strategy PRIDE Homo sapiens Q Exactive Leucci et al. (2016) Sven Eyckerman Kris Gevaert 2016-01-13
PXD003164 Cross-species proteomics in analysis of mammalian sperm proteins PRIDE Sus scrofa domesticus (domestic pig), Mus musculus , Rattus norvegicus , Bos taurus , Equus caballus LTQ Orbitrap Velos Bayram et al. (2016) Dean Hammond Robert J Beynon 2016-01-13
PXD002614 Quantitative phosphoproteome analysis of glioblastoma stem cells PRIDE Homo sapiens LTQ Orbitrap Velos Narushima et al. (2015) Yuta Narushima Masaaki Oyama 2016-01-13
PXD002408 Quantitative K-GG site analysis PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Isabel Ruppen Oscar Fernández Capetillo 2016-01-13
PXD003317 Application of de novo sequencing to large-scale complex proteomics datasets PRIDE Saccharomyces cerevisiae (Baker's yeast), Bos taurus LTQ Orbitrap Velos Devabhaktuni & Elias (2016) Arun Devabhaktuni Joshua E. Elias 2016-01-12
PXD002160 PsbS interacting proteins PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Elite Dataset with its publication pending Gereon Poschmann Gereon Poschmann 2016-01-12
PXD001717 The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol PRIDE Pelagibacter ubique LTQ Orbitrap Dataset with its publication pending Ben Temperton Steve Giovannoni 2016-01-12
PXD003001 Triple SILAC exosomal quantitative proteomic analysis PRIDE Homo sapiens LTQ Orbitrap Clark et al. (2015) David Clark Li Mao 2016-01-12
PXD001582 Study of reversible oxidation of thiol proteins after hexyl aminolevulinate mediated photodynamic therapy PRIDE Homo sapiens Q Exactive Helander et al. (2016) Animesh Sharma Geir Slupphaug 2016-01-12
PXD003180 IP-MS of DCAF1/VprBP interacting proteins in mouse CD4 T cells PRIDE Mus musculus LTQ Orbitrap Guo et al. (2016) Yisong Wan Yisong Y. Wan 2016-01-12
PXD002517 Quantitative proteomic analysis of Shigella flexneri and Shigella sonnei Generalized Modules for Membrane Antigens (GMMA) reveals highly pure preparations. PRIDE Shigella sonnei 53G, Shigella flexneri 2a str. 2457T LTQ Orbitrap Velos Maggiore et al. (2015) James Wright Jyoti Choudhary 2016-01-12
PXD002354 pNPs N-terminomics PRIDE Homo sapiens QSTAR; Q Exactive Bekhouche et al. (2016) Mourad Bekhouche Colige 2016-01-12
PXD002961 Yersinia pestis Yp2126 laboratory domestication PRIDE Yersinia pestis CO92 LTQ Orbitrap 0 Owen Leiser Helen Kreuzer 2016-01-12
PXD002955 Yersinia pestis Yp1945 laboratory domestication PRIDE Yersinia pestis CO92 LTQ Orbitrap Leiser et al. (2015) Owen Leiser Helen Kreuzer 2016-01-12
PXD002405 Quantitative profiling of the enzymatic activity of the protein lysine mono-methyltransferase SMYD2 using SILAC-based proteomics PRIDE Homo sapiens Q Exactive Olsen et al. (2016) XIng-Jun Cao Benjamin A. Garcia 2016-01-11
PXD002103 FIH regulates cellular metabolism through hydroxylation of the deubiquitinase OTUB1. PRIDE Homo sapiens Q Exactive Scholz et al. (2016) Javier Rodriguez Cormac Taylar 2016-01-11
PXD003054 Bovine protein glycation sites in different milk products PRIDE Bos taurus LTQ Orbitrap XL ETD Milkovska-Stamenova & Hoffmann (2015) Sanja Milkovska-Stamenova Prof. Dr. Ralf Hoffmann 2016-01-11
PXD003262 LSD1 complexes PRIDE Homo sapiens LTQ Orbitrap Metzger et al. (2016) Joern Dengjel Joern Dengjel 2016-01-11
PXD003328 Gingras_deKreuk_HEG1_interactions_P88_VS3 MassIVE Homo sapiens LTQ Orbitrap Velos; LTQ Orbitrap Elite Dataset with its publication pending Gingras Lab Anne-Claude Gingras 2016-01-06
PXD002734 Protein turnover during in vitro human vocal fold mucosa remodeling PRIDE Homo sapiens LTQ Orbitrap Velos Li et al. (2015) Qiyao Li Lloyd M Smith 2016-01-06
PXD002855 A novel inducible retroviral expression system for StrepHA-tandem affinity purification mass-spectrometry-based proteomics PRIDE Homo sapiens , Mus musculus LTQ Orbitrap Velos Bigenzahn et al. (2015) Richard Kumaran Kandasamy Giulio Superti-Furga 2016-01-05
PXD002379 LC-MS/MS proteomic profiling of maize opaque endosperm mutants PRIDE Zea mays Q Exactive Morton et al. (2015) Shangang Jia David R. Holding 2016-01-05
PXD002441 Daphnia pulex_Lysine acetylation PRIDE Daphnia pulex (Water flea) Q Exactive Kwon et al. (2015) Oh Kwang Kwon Sangkyu Lee 2016-01-05
PXD002779 Rescuing discarded spectra: Full comprehensive analysis of a minimal proteome. PRIDE Mycoplasma pneumoniae (strain ATCC 29342 / M129) LTQ Orbitrap Velos Lluch-Senar et al. (2015) Francesco Mattia Mancuso Eduard Sabidò 2016-01-05
PXD002452 Characterisation of two distinct Nucleosome Remodelling and Deacetylase Complex (NuRD) assemblies in embryonic stem cells. PRIDE Mus musculus LTQ Orbitrap Velos Bode et al. (2015) James Wright Jytoi Choudhary 2016-01-05
PXD003165 Label-free based quantitative proteomics analysis of primary neonatal porcine Leydig cells exposed to the persistent contaminant 3-methylsulfonyl-DDE PRIDE Sus scrofa domesticus (domestic pig) Q Exactive Kalayou et al. (2015) Gustavo de Souza Erik Ropstad 2016-01-05
PXD002857 A systematic analysis of methylpeptide false discovery rates PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos; Q Exactive Hart-Smith et al. (2015) Gene Hart-Smith Marc Ronald Wilkins 2016-01-05
PXD001491 The metabolic background is a global player in Saccharomyces gene expression epistasis PRIDE Saccharomyces cerevisiae (Baker's yeast) Synapt MS 10.1038/nmicrobiol.2015.30 Pavel Shliaha Kathryn Lilley 2016-01-05
PXD002767 Time-course Investigation of Phytophthora infestans infection of potato leaf from three cultivars by quantitative proteomics PRIDE Solanum tuberosum Q Exactive Larsen et al. (2016) Allan Stensballe Allan Stensballe 2016-01-05
PXD002686 Short Term Immune Response to IL6 inhibition (Tocilizumab) PRIDE Homo sapiens Q Exactive Dataset with its publication pending Allan Stensballe Allan Stensballe 2016-01-05
PXD002619 Proteomic maps of breast cancer subtypes PRIDE Homo sapiens Q Exactive Tyanova et al. (2016) Stefka Tyanova Tamar Geiger 2016-01-05
PXD002850 ROS-activated ATM-dependent phospho-signaling PRIDE Homo sapiens LTQ Orbitrap Velos Kozlov et al. (2015) Mark Graham Mark Graham 2016-01-04
PXD000787 A proteomic map of the human aqueous humor PRIDE Homo sapiens LTQ Orbitrap Velos Murthy et al. (2015) Akhilesh Pandey Akhilesh Pandey 2016-01-04
PXD002234 Influenza Polymerase Can Adopt an Alternative Configuration Involving a Radical Repacking of PB2 Domains PRIDE Influenza A virus (A/Vietnam/1203/04), Influenza B virus (B/Memphis/13/03) LTQ Orbitrap Velos Thierry et al. (2015) Thomas Bock Martin Beck 2016-01-04
PXD002635 Evaluation of of kinase acitivity profiling using chemical proteomics PRIDE Homo sapiens Q Exactive; LTQ Orbitrap Elite Ruprecht et al. (2015) Benjamin Ruprecht Bernhard Kuster 2016-01-04
PXD002899 CRM1 Exportome and nucleocytoplasmic partition PRIDE Homo sapiens , Saccharomyces cerevisiae (Baker's yeast), Xenopus laevis (African clawed frog) Q Exactive Kirli et al. (2015) Samir Karaca Henning Urlaub and Dirk Görlich 2016-01-04
PXD002282 Reader interactome of epigenetic histone marks in birds PRIDE Gallus gallus , Taeniopygia guttata (Zebra finch) (Poephila guttata) Q Exactive Bluhm et al. (2015) F Butter Falk Butter 2016-01-04
PXD003254 Chlamydomonas Eyespot PRIDE Chlamydomonas reinhardtii CC3269 LTQ Eitzinger et al. (2015) Wolfram Weisheit Maria Mittag 2016-01-04
PXD001583 CoIP of Nrl1 from normal and irradiated fission yeast cells PRIDE Schizosaccharomyces pombe Q Exactive Aronica et al. (2015) Dorothea Anrather Markus Hartl 2016-01-04
PXD002977 Human HDL 2D-LC-MS/MS PRIDE Homo sapiens Q Exactive Oberbach et al. (2015) Nico Jehmlich Uwe Völker 2016-01-04
PXD003151 Protein expression patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries. PRIDE Streptococcus mutans 19 LTQ Orbitrap Velos Rudney et al. (2015)Jagtap et al. (2015) Pratik Jagtap Pratik Jagtap 2016-01-04
PXD001369 Comprehensive systems biology analysis of a seven-month cigarette smoke inhalation study in C57BL/6 mice. PRIDE Mus musculus Q Exactive Ansari et al. (2016) Bjoern Titz Julia Hoeng 2016-01-04
PXD001718 Brain microvessels onotogeny-INSERM ERI28 PRIDE Mus musculus LTQ Orbitrap Elite Porte et al. (2016) Philippe LEROUX Dr Bruno Gonzalez 2016-01-04
PXD003389 Vartanian et al. 2015 raw data MassIVE Homo sapiens Orbitrap Fusion Dataset with its publication pending Kebing Yu David Stokoe 2015-12-28
PXD003361 N_DN_TD_Spectra_MPCs MassIVE Homo sapiens, Equus caballus, Oryctolagus cuniculus Q Exactive; LTQ Orbitrap Elite Dataset with its publication pending Owen Skinner Neil Kelleher 2015-12-28
PXD002917 Proteome validation for novel full-length genes in the giant panda PRIDE Ailuropoda melanoleuca (Giant panda) LTQ Chen et al. (2015) Yibo Hu Fuwen Wei 2015-12-23
PXD002106 Proteomic Analysis of Minimally Damaged Renal Tubular Tissue from Two-Kidney-One-Clip Hypertensive Rats Demonstrates Extensive Changes Compared to Tissue from Controls PRIDE Rattus norvegicus LTQ Orbitrap Elite Finne et al. (2016) Kenneth Finne Kenneth Finne 2015-12-23
PXD003381 Structural Analysis of a Prokaryotic Ribosome Using a Novel Amidinating Cross-Linker and Mass Spectrometry PRIDE Escherichia coli LTQ Orbitrap Lauber & Reilly (2011) Chao Ji James P. Reilly 2015-12-23
PXD002111 Analysis of signaling endosome composition and dynamics using SILAC in embryonic stem cell-derived neurons PRIDE Mus musculus Q Exactive Debaisieux et al. (2015) Vesela Encheva Ambrosius P. Snijders 2015-12-21
PXD001662 Acetylome and succinylome of Corynebacterium glutamicum PRIDE Corynebacterium glutamicum (strain ATCC 13032 / K051) Q Exactive Mizuno et al. (2015) Saori Kosono Saori Kosono 2015-12-21
PXD002845 Deep quantitative proteomics underlies extensive metabolic reprogramming and cancer-like changes of ectopic endometriotic stromal cells PRIDE Homo sapiens Q Exactive Kasvandik et al. (2015) Sergo Kasvandik Andres Salumets 2015-12-21
PXD003369 Identification and Quantification of Site-Specific N-Glycosylation in Human Plasma MassIVE Human LTQ Orbitrap Elite Dataset with its publication pending GunWook Park Jong Shin Yoo 2015-12-17
PXD003311 CodY regulates the activity of the virulence quorum sensor PlcR PRIDE Bacillus thuringiensis Bt407 Q Exactive Slamti et al. (2015) HENRY CELINE Celine Henry 2015-12-17
PXD002294 Updating the Proteome of the uncultivable hemotrophic Mycoplasma suis in experimentally infected pigs PRIDE Sus scrofa domesticus (domestic pig), Mycoplasma suis (strain KI_3806) LTQ Orbitrap Elite Dietz et al. (2015) Christian Lassek Ludwig E. Hölzle 2015-12-17
PXD003156 Gel-free/label-free proteomic analysis of developing rice grains under heat stress PRIDE Rice(O. sativa) LTQ Orbitrap Timabud et al. (2015) xiaojian Yin Setsuko Komatsu 2015-12-17
PXD002733 Proteomic profile of deleted in breast cancer 1 protein-protein interactions PRIDE Homo sapiens LTQ Orbitrap Velos Giguère et al. (2015) T Greco Ileana M Cristea 2015-12-17
PXD002844 Quantitative analysis to the subcellular proteome in response to cathepsin D knockdown in HeLa cells PRIDE Homo sapiens LTQ Orbitrap Velos Su et al. (2015) Siyuan Su Siqi Liu 2015-12-17
PXD002051 Secretome identification of immune cell factors mediating metastatic cell homing PRIDE Mus musculus LTQ Orbitrap Velos Aguado et al. (2015) Dhaval Nanavati Lonnie D. Shea, Ph.D 2015-12-17
PXD002611 Heme-activated Promiscuous Targeting of Artemisinin in Plasmodium falciparum PRIDE Plasmodium falciparum (isolate 3D7) TripleTOF 5600 Wang et al. (2015) Qingsong Lin Dr Lin Qingsong 2015-12-17
PXD003226 Proteomic analysis of purified human centrosomes PRIDE Homo sapiens Q Exactive Farina et al. (2015) Yohann Couté Christophe Bruley 2015-12-16
PXD001489 Protein 2DE reference map of Rhodnius prolixus's anterior midgut, part 2 PRIDE Rhodnius prolixus (Triatomid bug) Q-Tof ultima Vieira et al. (2015) Larissa Rezende Vieira Sabrina Bousbata 2015-12-14
PXD001488 Protein 2DE reference map of Rhodnius prolixus's anterior midgut, part 1 PRIDE Rhodnius prolixus (Triatomid bug) Q-Tof ultima Vieira et al. (2015) Larissa Rezende Vieira Sabrina Bousbata 2015-12-14
PXD003123 Proteome profiling of Rhodobacter capsulatus wild type and a ΔmodABC mutant in response to molybdenum PRIDE Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) Synapt MS Hoffmann et al. (2015) Sina Schäkermann Julia Elisabeth Bandow 2015-12-14
PXD001452 The extracellular proteome of two Bifidobacterium strains reveals different adaptation strategies to low iron conditions PRIDE Bifidobacterium pseudolongum LTQ Orbitrap Dataset with its publication pending Pamela Vazquez-Gutierrez Prof. Christophe Lacroix 2015-12-14
PXD001451 The extracellular proteome of two Bifidobacterium strains reveals different adaptation strategies to low iron conditions PRIDE Bifidobacterium kashiwanohense PV20-2 LTQ Orbitrap Dataset with its publication pending Pamela Vazquez-Gutierrez Prof. Christophe Lacroix 2015-12-14
PXD000760 SILAC study on the effect of trans fatty acids in HepG2 cells PRIDE Homo sapiens TripleTOF 5600 Krogager et al. (2015) Lone Vendel Nielsen Jan J. Enghild 2015-12-14
PXD000908 Agron-omics Long Day Optimal Watering (LOW) experiment PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap XL 10.1016/j.cpb.2015.07.001 Katja Baerenfaller Wilhelm Gruissem 2015-12-14
PXD003183 Identification of multiple transferrin species in spleen from mice with collagen-induced arthritis which may reflect changes in transferrin glycosylation associated with the disease activity. Role of CD38. Citrullinated Proteins PRIDE Mus musculus 4800 Proteomics Analyzer; ultraflex Rosal-Vela et al. (2015) Antonio Rosal-Vela Jaime Sancho Lopez 2015-12-11
PXD002694 Direct and Absolute Quantification of over 1800 Yeast Proteins via Selected Reaction Monitoring PRIDE Saccharomyces cerevisiae (Baker's yeast) Q Exactive Lawless et al. (2016) Philip Brownridge Rob Beynon 2015-12-11
PXD003214 Ixodes Scapularis tick saliva proteins sequentially secreted every 24h during blood feeding PRIDE Ixodes scapularis (Black-legged tick) (Deer tick) Q Exactive Kim et al. (2016) Albert Mulenga Albert Mulenga 2015-12-11
PXD003301 Mouse granule cell layer neurons proteomics response to West Nile Virus (WNV) MassIVE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Matthew Monroe Yoshihiro Kawaoka, Katrina Waters, Richard Smith and Thomas Metz 2015-12-10
PXD002489 Cupiennius salei Hyal LC-MSMS PRIDE Cupiennius salei (American wandering spider) Q Exactive Biner et al. (2015) Christian Trachsel Lucia Kuhn-Nentwig 2015-12-10
PXD001999 Triple SILAC glycoproteomic analysis of NSCLC cell lines PRIDE Homo sapiens LTQ Orbitrap Clark et al. (2016) David Clark Li Mao 2015-12-10
PXD003163 Glycopeptide glycoforms analysis of mouse transferrin PRIDE Mus musculus 6220 Time-of-Flight LC/MS Rosal-Vela et al. (2015) Albert Barroso Victoria Sanz Nebot 2015-12-10
PXD002644 Identification of multiple transferrin species in spleen from mice with collagen-induced arthritis which may reflect changes in transferrin glycosylation associated with the disease activity. Role of CD38 PRIDE Mus musculus 4800 Proteomics Analyzer Rosal-Vela et al. (2015) Antonio Rosal-Vela Jaime Sancho Lopez 2015-12-10
PXD002643 Identification of multiple transferrin species in spleen from mice with collagen-induced arthritis which may reflect changes in transferrin glycosylation associated with the disease activity. Role of CD38. Set 2 of identified proteins (MALDI TOF/TOF Ultra PRIDE Mus musculus ultraflex Rosal-Vela et al. (2015) Antonio Rosal-Vela Jaime Sancho Lopez 2015-12-10
PXD001833 Immunohistochemical markers distinguishing cholangiocellular carcinoma from pancreatic ductal adenocarcinoma discovered by proteomic analysis of microdissected cells PRIDE Homo sapiens LTQ Orbitrap Elite Padden et al. (2015) Juliet Padden Barbara Sitek 2015-12-10
PXD001565 Evaluation of phospho-tyrosine antibodies for label-free phosphoproteomics PRIDE Homo sapiens Q Exactive van der Mijn et al. (2015) Sander Piersma Connie Ramona Jimenez 2015-12-09
PXD003083 Proteomic analysis of seed germination of wheat (Triticum aestivum L.) PRIDE Triticum aestivum Q Exactive Dong et al. (2015) Shoumin Zhen Yueming Yan 2015-12-09
PXD001119 Targeted Proteomics of NERD and FLS2 on LTQ-Orbitrap Velos Mass Spectrometer PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Majovsky et al. (2014) Wolfgang Hoehenwarter Wolfgang Hoehenwarter 2015-12-09
PXD001795 Arabidopsis seedling FFE-purified plasma membrane LC-MS/MS PRIDE Arabidopsis thaliana (Mouse-ear cress) TripleTOF 5600 de Michele et al. (2016) Joshua Heazlewood Joshua Heazlewood 2015-12-08
PXD002924 Nucleocytoplasmic O-Man glycoproteome PRIDE Schizosaccharomyces pombe, Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Halim et al. (2015) Adnan Halim Henrik Clausen 2015-12-08
PXD002637 PME1 interactome PRIDE Homo sapiens QSTAR Pokharel et al. (2015) Anne Rokka Jukka Westermarck 2015-12-08
PXD002588 A Conformationally Arrested Peptidomimetic Antibiotic Disrupts Selectively the Outer Membrane in Escherichia coli PRIDE Escherichia coli LTQ Orbitrap; LTQ Orbitrap Velos Urfer et al. (2015) Christian Ahrens Prof. John Robinson 2015-12-07
PXD002932 Cancer Serum PTM Profiling PRIDE Homo sapiens LTQ Orbitrap Velos; LTQ Orbitrap Elite Gu et al. (2015) HONGBO GU Hongbo Gu 2015-12-07
PXD002931 Serum PTM Identification_Technical Triplicates PRIDE Homo sapiens LTQ Orbitrap Velos Gu et al. (2015) HONGBO GU Hongbo Gu 2015-12-07
PXD002411 Phosphoproteomic Profiling Reveals Epstein-Barr Virus Protein Kinase Integration of DNA Damage Response and Mitotic Signaling PRIDE Homo sapiens LTQ Orbitrap Velos; LTQ Orbitrap Elite Li et al. (2015) Renfeng Li Renfeng Li 2015-12-07
PXD002944 Proteome analysis of testis from infertile protein C inhibitor deficient mice reveals predominant changes in serpin processing and prostaglandin metabolism PRIDE Mus musculus LTQ Velos; LTQ Orbitrap Velos Yang et al. (2015) Goran Mitulović Maria Zellner 2015-12-07
PXD002528 Inferior Temporal Gyrus in Human Ageing: a Quantitative Protein Profiling Work based on Chinese Human Brain Bank PRIDE Homo sapiens Q Exactive Xu et al. (2015) Wei Ge Wei Ge 2015-12-07
PXD002722 CFTR interactome MassIVE Homo sapiens LTQ; LTQ Orbitrap XL; LTQ Orbitrap Elite Pankow et al. (2015); Sandra Pankow*, Casimir Bamberger*, Diego Calzolari, Salvador Martínez-Bartolomé, Mathieu Lavallée-Adam, William E. Balch & John R. Yates III. ΔF508 CFTR interactome r Sandra Pankow John R Yates 2015-12-03
PXD002688 Systematic Evaluation of Data-Independent Acquisition for Sensitive and Reproducible Proteomics – a Prototype Design for a Single Injection Assay PRIDE Escherichia coli TripleTOF 5600 Heaven et al. (2016) Michael Heaven Kenneth D. Greis 2015-12-02
PXD002471 Quantitative histone mass spectrometry identifies elevated histone H3 lysine 27 trimethylation in melanoma PRIDE Homo sapiens LTQ Orbitrap Velos Sengupta et al. (2015) Stephanie Byrum Stephanie Byrum 2015-12-02
PXD003270 Site-specific O-Glycosylation Analysis of Human Blood Plasma Proteins MassIVE Homo sapiens amaZon ETD Dataset with its publication pending Marcus Hoffmann Marcus Hoffmann, Kristina Marx, Udo Reichl, Manfred Wuhrer, Erdmann Rapp 2015-12-02
PXD003053 HYPE mediated AMPylation site profiling with YnATP in human lysates PRIDE Homo sapiens Q Exactive Broncel et al. (2015) Remigiusz Serwa Edward Tate 2015-12-02
PXD002601 HYPE mediated AMPylation profiling in human lysates PRIDE Homo sapiens Q Exactive Broncel et al. (2015) Remigiusz Serwa Edward W. Tate 2015-12-02
PXD002363 Phosphoproteomic profiling of the DNA damage response in MCF10A and human PBMC cells by SILAC labeling and 1D and 2D-LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Velos; LTQ Orbitrap Elite Kennedy et al. (2015) Jacob Kennedy Amanda G Paulovich 2015-12-01
PXD001819 yeast-UPS1 standard LC-MS/MS dataset PRIDE Homo sapiens , Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Ramus et al. (2016) Emmanuelle Mouton Barbosa Anne Gonzalez de Peredo 2015-12-01
PXD002176 Dynamics of hippocampal protein expression during long-term spatial memory formation PRIDE Mus musculus Synapt MS Borovok et al. (2015) Yishai Levin Izhak Michaelevsky 2015-12-01
PXD002007 Temperature dependence of the proteome profile of the psychrotolerant pathogenic food spoiler Bacillus weihenstephanensis type strain WSBC 10204 PRIDE Bacillus weihenstephanensis Bruker Daltonics apex series Stelder et al. (2015) Sacha Stelder Chris Gerdinus de Koster 2015-12-01
PXD003145 Elf5-centered transcription factor hub controls trophoblast stem cell self-renewal and differentiation through stoichiometry-sensitive shifts in target gene networks PRIDE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending David Oxley david oxley 2015-12-01
PXD003258 A quantitative spatial proteomics analysis of proteome turnover in human cells PRIDE Homo sapiens LTQ Orbitrap Velos Boisvert et al. (2012) Vackar Afzal Angus Lamond 2015-12-01
PXD002681 Cryo-slicing BN-MS of rat brain mitochondrial proteins PRIDE Rattus norvegicus LTQ Orbitrap Elite Müller et al. (2015) Alexander Haupt Prof. Dr. Bernd Fakler 2015-12-01
PXD001905 A quantitative model for macrophage activation predicts tunable distance thresholds for propagation of inflammationes in response LPS stimulation PRIDE Mus musculus LTQ Orbitrap Elite Dataset with its publication pending william rowe Pawel Paszek 2015-11-30
PXD002193 Bovine tissue and blood contamination from bullets by LC-MS/MS PRIDE Homo sapiens , Bos taurus LTQ Orbitrap Dammeier et al. (2015) Sascha Dammeier Sascha Dammeier 2015-11-30
PXD001133 Proteome of Saccharomyces cerevisiae extracellular matrix PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Faria-Oliveira et al. (2015) Fábio Faria-Oliveira Cândida Manuel Ribeiro Simões Lucas 2015-11-30
PXD002250 proteome and pathway effects of chronic haoperidol treatment in mouse hippocampus PRIDE Mus musculus LTQ Orbitrap Schubert et al. (2015) Melanie Foecking David Richard Cotter 2015-11-30
PXD001738 Shotgun Proteomics of Brachylophosaurus canadensis Blood Vessels PRIDE Brachylophosaurus canadensis (Campanian hadrosaur), Struthio camelus , Gallus gallus LTQ Orbitrap XL; Fourier Transform Ion Cyclotron Resonance Mass Spectrometer; LTQ Orbitrap Elite Cleland et al. (2015) Leonid Zamdborg Timothy Paul Cleland 2015-11-30
PXD003239 Global Subcellular Characterization of Protein Degradation Using Quantitative Proteomics PRIDE Homo sapiens Q Exactive Larance et al. (2013) Vackar Afzal Angus Lamond 2015-11-30
PXD002530 Use of Apoe−/− Mice in an 8-Month Systems Toxicology Inhalation/Cessation Study to Investigate Cardiovascular and Respiratory Exposure Effects of a Candidate Modified Risk Tobacco Product, THS 2.2, Compared with Conventional Cigarettes PRIDE Mus musculus Q Exactive Phillips et al. (2015)Titz et al. (2015) Bjoern Titz Julia Hoeng 2015-11-30
PXD002498 Quantitative proteomics in osteoblasts-released matrix vesicles PRIDE Homo sapiens LTQ Orbitrap XL Schmidt et al. (2015) Johannes R. Schmidt Martin von Bergen 2015-11-30
PXD003237 Data for Mass spectrometry analysis of collagen IV MassIVE Mus musculus, Homo sapiens LTQ Orbitrap Velos; Q Exactive Dataset with its publication pending Trayambak Basak Dr. Roberto M. Vanacore 2015-11-25
PXD002849 Glycoproteome of Elongating cotton fiber cells PRIDE Gossypium ultraflex Kumar et al. (2013) Saravanan Kumar Vanga Siva Reddy 2015-11-25
PXD002848 Genomic and Proteomic Studies on the Mode of Action of Oxaboroles against the African Trypanosome PRIDE Trypanosoma brucei LTQ Orbitrap Velos Jones et al. (2015) Michael Urbaniak Alan Fairlamb 2015-11-25
PXD002125 Label free quantitative proteomics reveals survival mechanisms developed by Hypertrophic chondrocytes under ER stress PRIDE Mus musculus LTQ Orbitrap Velos Kudelko et al. (2015) MATEUSZ KUDELKO Danny Chan 2015-11-25
PXD001661 Comparative Analyses of Five Grapevine (Vitis vinifera L.) Cultivars Under Seasonal Water Deficit PRIDE Vitis vinifera , berry LTQ Orbitrap Velos Ghan et al. (2015) Ryan Ghan Grant R Cramer 2015-11-25
PXD002838 The effect of microbial colonization on the host proteome varies by gastrointestinal location PRIDE Mus musculus LTQ Orbitrap Velos Lichtman et al. (2015) Joshua Elias Joshua E Elias 2015-11-25
PXD003200 Proteomic characterization of MEIOC interactants: part 2 PRIDE Homo sapiens LTQ Orbitrap Abby et al. (2016) Jean ARMENGAUD Jean Armengaud 2015-11-25
PXD003199 Proteomic characterization of MEIOC interactants: part 1 PRIDE Mus musculus LTQ Orbitrap Abby et al. (2016) Jean ARMENGAUD Jean Armengaud 2015-11-25
PXD002135 ATR inhibition rewires cellular signaling networks in response to pathologic replication stress PRIDE Homo sapiens Q Exactive Wagner et al. (2015) Petra Beli Petra Beli 2015-11-24
PXD003227 Identification and Quantification of Site-Specific N-Glycosylation in Human Plasma MassIVE Homo sapiens LTQ Orbitrap Elite Dataset with its publication pending GunWook Park Gun Wook Park 2015-11-23
PXD002029 Comparative proteome stability analysis of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human colon mucosal biopsies PRIDE Homo sapiens Q Exactive Bennike et al. (2016) Tue Bennike Allan Stensballe 2015-11-23
PXD002121 Human milk whey proteins treated Caco-2 cells PRIDE Homo sapiens Q Exactive Cundiff et al. (2015) Qiang Zhang Qiang Zhang 2015-11-23
PXD003124 Dog tear film proteome in-depth analysis PRIDE Canis familiaris (Canis lupus familiaris) ultraflex Winiarczyk et al. (2015) Tomasz Paweł Banach prof. Stanisław Winiarczyk 2015-11-23
PXD003127 Geoduck (Panopea generosa) gonad LC-MS/MS PRIDE Panopea generosa Q Exactive Dataset with its publication pending Emma Timmins-Schiffman Steven B. Roberts 2015-11-23
PXD002896 Mouse organ specific spectral library and DIA analysis of the plasma proteome PRIDE Mus musculus Q Exactive Malmström et al. (2016) Simon Hauri Johan Malmstrom 2015-11-23
PXD001571 Solid-phase extraction of N-linked glycans and glycosite-containing peptides (NGAG) for comprehensive characterization of glycoproteins PRIDE Homo sapiens Q Exactive Sun et al. (2015) Paul Aiyetan Hui Zhang 2015-11-23
PXD002999 Changes in the nuclear proteome of developing wheat (Triticum aestivum L.) grain PRIDE Triticum aestivum LTQ Bonnot et al. (2015) Titouan Bonnot Emmanuelle Bancel 2015-11-20
PXD002370 UPS1-yeast standard analysis PRIDE Homo sapiens , Saccharomyces cerevisiae (Baker's yeast) Q Exactive Gianetto et al. (2015) Yohann Couté Christophe Bruley 2015-11-19
PXD001892 Control of developmentally poised erythroid genes by combinatorial corepressor actions PRIDE Mus musculus LTQ Orbitrap Stadhouders et al. (2015) Jeroen Demmers Jeroen Demmers 2015-11-19
PXD002959 Determining composition of micron-scale protein deposits in neurodegenerative disease by spatially targeted optical microproteomics PRIDE Homo sapiens , Mus musculus LTQ Orbitrap Velos Hadley et al. (2015) Hongbo Guo Avijit Chakrabartty 2015-11-18
PXD002236 Protein composition of TGFBI-R124C and TGFBI-R555W associated aggregates suggests multiple mechanisms leading to Lattice and Granular corneal dystrophy PRIDE Homo sapiens TripleTOF 5600 Courtney et al. (2015) Ebbe Toftgaard Poulsen Jan J. Enghild 2015-11-18
PXD002445 Reprocessed: Chick utricle hair bundles and utricular epithelium—Orbitrap PRIDE Gallus gallus LTQ Orbitrap Elite Wilmarth et al. (2015) Peter Barr-Gillespie Peter Barr-Gillespie 2015-11-17
PXD002416 Rat utricle hair bundles and whole utricles—LTQ PRIDE Rattus norvegicus LTQ Wilmarth et al. (2015) Peter Barr-Gillespie Peter Barr-Gillespie 2015-11-17
PXD002415 Mouse utricle hair bundles and whole utricles—Velos PRIDE Mus musculus LTQ Velos Wilmarth et al. (2015) Peter Barr-Gillespie Peter Barr-Gillespie 2015-11-17
PXD002414 Chick utricle hair bundles and utricular epithelium—Velos PRIDE Gallus gallus LTQ Velos Wilmarth et al. (2015) Peter Barr-Gillespie Peter Barr-Gillespie 2015-11-17
PXD002410 Chick utricle hair bundles and utricular epithelium—LTQ PRIDE Gallus gallus LTQ Wilmarth et al. (2015) Peter Barr-Gillespie Peter Barr-Gillespie 2015-11-17
PXD002650 Endothelial cell proteomic response to Rickettsia conorii infection PRIDE Homo sapiens Q Exactive Zhao et al. (2015) Yingxin Zhao Allan R. Brasier 2015-11-17
PXD002948 Micro-proteomics with iterative data analysis: proteome analysis in C. elegans at the single worm level PRIDE Caenorhabditis elegans Q Exactive Bensaddek et al. (2015) Vackar Afzal Angus Lamond 2015-11-17
PXD002987 xIP-MS: topological analysis of chromatin-associated protein complexes using single affinity purification PRIDE Homo sapiens Q Exactive; Orbitrap Fusion Makowski et al. (2015) Matthew Makowski Michiel Vermeulen 2015-11-17
PXD001868 Yeast inter-species comparative proteomics PRIDE Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Candida sphaerica) LTQ Orbitrap Kito et al. (2015) Keiji Kito Keiji Kito 2015-11-16
PXD001867 Yeast inter-species comparative proteomics PRIDE Lachancea waltii NCYC 2644 LTQ Orbitrap Kito et al. (2015) Keiji Kito Keiji Kito 2015-11-16
PXD001866 Yeast inter-species comparative proteomics PRIDE Saccharomyces mikatae IFO 1815 LTQ Orbitrap Kito et al. (2015) Keiji Kito Keiji Kito 2015-11-16
PXD001865 Yeast inter-species comparative proteomics PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Kito et al. (2015) Keiji Kito Keiji Kito 2015-11-16
PXD001923 Insights into the proteomic response of soybean to stress of Al2O3, ZnO, and Ag nanoparticles PRIDE Glycine max (Glycine hispida) LTQ Orbitrap Hossain et al. (2015) Ghazala Mustafa Setsuko Komatsu 2015-11-16
PXD003013 Comparison of the Cowpox Virus and Vaccinia Virus Mature Virion Proteome: Analysis of the species- and strain-specific Proteome PRIDE Orthopoxvirus LTQ Orbitrap Doellinger, Schaade & Nitsche (2015) Joerg Doellinger Andreas Nitsche 2015-11-16
PXD001548 Rapid High-pH Reverse Phase StageTip for Sensitive Small-Scale Membrane Proteomic Profiling PRIDE Homo sapiens , Rattus rattus (Black rat) LTQ Orbitrap Dimayacyac-Esleta et al. (2015) Baby Rorielyn Dimayacyac-Esleta Yu-Ju Chen 2015-11-16
PXD001395 Surface proteome adaption of Staphylococcus aureus HG001 during biofilm formation PRIDE Staphylococcus aureus LTQ Orbitrap Moche et al. (2015) Martin Moche Dörte Becher 2015-11-13
PXD001926 Legionella pneumophila proteome PRIDE Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) LTQ Orbitrap Aurass et al. (2015) Birgit Voigt Miacheal Hecker 2015-11-13
PXD003184 Identifying Predictors Of Taxane-Induced Peripheral Neuropathy Using Mass Spectrometry-based Proteomics Technology MassIVE Homo sapiens Orbitrap Fusion ETD Dataset with its publication pending toni koller Chen EI 2015-11-12
PXD000376 A Multi-Omic Analysis of Human Naive CD4 T cells PRIDE Homo sapiens LTQ Orbitrap Velos; LTQ Orbitrap Elite Mitchell et al. (2015) Akhilesh Pandey Akhilesh Pandey 2015-11-12
PXD000918 Identification of Candidate Substrates for the Golgi Tul1 E3 Ligase Using Quantitative diGly Proteomics in Yeast PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Elite Tong et al. (2014) Akhilesh Pandey Akhilesh Pandey 2015-11-12
PXD003055 Model-driven analysis of metabolic immunomodulators of macrophage activation PRIDE Mus musculus LTQ Orbitrap; LTQ Bordbar et al. (2012) Matthew Monroe Bernard Palsson 2015-11-11
PXD002455 Calsequestrins in skeletal and cardiac muscle from adult Danio rerio. PRIDE Danio rerio (Brachydanio rerio) Q Exactive Furlan et al. (2015) Nagarjuna Nagaraj Alessandra Nori 2015-11-10
PXD003119 Protein stable isotope fingerprinting (P-SIF): Chocolate Pots (Yellowstone) biomass PRIDE microbial mat metagenome 6520 Quadrupole Time-of-Flight LC/MS Dataset with its publication pending Susan Carter Ann Pearson 2015-11-10
PXD003125 Protein stable isotope fingerprinting (P-SIF): Mahoney Lake (Canada) 7-m biomass PRIDE microbial mat metagenome 6520 Quadrupole Time-of-Flight LC/MS Dataset with its publication pending Susan Carter Ann Pearson 2015-11-10
PXD003150 Protein stable isotope fingerprinting (P-SIF): Synechocystis sp. PCC6803 + Allochromatium vinosum DSM180 biomass mixture PRIDE Synechocystis sp. PCC 6803, Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D) (Chromatium vinosum) 6520 Quadrupole Time-of-Flight LC/MS Dataset with its publication pending Susan Carter Ann Pearson 2015-11-10
PXD003032 Identification and Quantitative Analysis of Cellular Proteins Affected by Treatment with Withaferin A using a SILAC-based Proteomics Approach PRIDE Mus musculus LTQ Orbitrap Elite Narayan, Seeley & Jinwal (2015) Umesh Jinwal Umesh Jinwal 2015-11-10
PXD002941 Novel N-terminal and lysine methyltransferases that target translation elongation factor 1A in yeast and human PRIDE Homo sapiens , Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos; Q Exactive Hamey et al. (2015) Joshua Hamey Marc Ronald Wilkins 2015-11-10
PXD002871 Phosphoproteomics quantitative characterization in Jurkat E6.1 and Jurkat Gamma1. PRIDE Homo sapiens LTQ Orbitrap Nguyen et al. (2015) Montserrat Carrascal Joaquin Abian Moñux 2015-11-10
PXD002436 Monitoring cellular phosphorylation signaling pathways into chromatin and down to the gene level PRIDE Homo sapiens LTQ Orbitrap Han et al. (2015) yumiao han Benjamin A. Garcia 2015-11-09
PXD002934 Cell surface proteomic map of HIV infection reveals antagonism of amino acid metabolism by Vpu and Nef PRIDE Homo sapiens LTQ Orbitrap Matheson et al. (2015) Yagnesh Umrania Paul Lehner 2015-11-09
PXD002837 Snake Venom LC/MSE PRIDE Agkistrodon contortrix, Sistrurus miliarius barbouri (Dusky pigmy rattlesnake) (Sistrurus barbouri), Agkistrodon piscivorus , Crotalus horridus (Timber rattlesnake), Sistrurus catenatus , Crotalus adamanteus (Eastern diamondback rattlesnake), Boiga irregu Synapt MS Rokyta, Margres & Calvin (2015) Mark Margres Darin R. Rokyta 2015-11-09
PXD002073 Proteome profiling upon Myc activation PRIDE Homo sapiens Orbitrap Fusion ETD Elkon et al. (2015) Onno Bleijerveld A.F. Maarten Altelaar 2015-11-09
PXD002435 Glycosylation analysis of TNF-alpha-induced insulin resistance PRIDE Mus musculus Orbitrap Fusion ETD; Q Exactive Parker et al. (2015) Benjamin Parker Benjamin Parker 2015-11-09
PXD002998 DIA LC-MSMS of MCF-7 Breast Cancer Cells PRIDE Homo sapiens LTQ Petrovic et al. (2015) Manfred Heller Manfred Heller 2015-11-09
PXD000701 Phosphoproteome of ecto-ATP synthase blockade in tumor xenograft tissues PRIDE Homo sapiens TripleTOF 5600 Hu et al. (2015) Chia-Wei Hu Hsueh-Fen Juan 2015-11-06
PXD002810 miR-17-92 sustains lymphoma growth by fine-tuning MYC PRIDE Mus musculus LTQ FT Mihailovich et al. (2015) Michael Bremang Tiziana Bonaldi 2015-11-06
PXD000696 Quantitative phosphoproteome of ecto-ATP synthase blockade in lung cancer cells PRIDE Homo sapiens LTQ Orbitrap Hu et al. (2015) Chia-Wei Hu Hsueh-Fen Juan 2015-11-06
PXD002461 EBV proteomics data PRIDE Homo sapiens LTQ Orbitrap Velos Traylen et al. (2015) David Matthews David Matthews 2015-11-06
PXD002873 vg120629 PRIDE Botryotinia fuckeliana (strain B05.10) (Noble rot fungus) (Botrytis cinerea) LCQ Classic Dieryckx et al. (2015) Dupuy Jean-William Vincent Girard 2015-11-06
PXD002821 Low mass blood peptides discriminative of IBD severity PRIDE Homo sapiens LTQ FT Yau et al. (2015)Wasinger et al. (2015) Valerie Wasinger Valerie Wasinger 2015-11-06
PXD002622 A Pilot Proteogenomic Study With Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma PRIDE Homo sapiens LTQ Orbitrap Velos Stewart et al. (2015) Paul Stewart Eric Haura 2015-11-06
PXD001538 Comprehensive XL-MS reveals parallel orientation and versatile conformations of plant HOP2/MND1 PRIDE Arabidopsis thaliana (Mouse-ear cress) Q Exactive Rampler et al. (2015) Otto Hudecz Karl Mechtler 2015-11-05
PXD002943 Quantitative analysis of SUMO1 and SUMO2 proteomes in human lung A549 cells during influenza A virus infection or heat-shock PRIDE Homo sapiens Q Exactive Domingues et al. (2015) Filip Golebiowski Benjamin Geoffrey Hale 2015-11-05
PXD000299 Proteomic analysis of fluids from the genital tract of ewes during the estrous cycle PRIDE Ovis aries LTQ Orbitrap Soleilhavoup et al. (2015) G HARICHAUX 2015-11-05
PXD002540 Quantitative proteomic analysis reveals molecular adaptations in the hippocampal synaptic active zone of chronic mild stress-unsusceptible rats PRIDE Rattus norvegicus TripleTOF 5600 Zhou et al. (2015) jian zhou Peng Xie 2015-11-05
PXD002723 Molecular Architecture of the Yeast Mediator Complex MassIVE Saccharomyces cerevisiae LTQ Orbitrap Velos Robinson et al. (2015) Mike Trnka Roger D. Kornberg 2015-11-04
PXD002590 Acetaminophen Adducts of Rat Liver Microsomal Proteins using LC-MSMS PRIDE Rattus norvegicus TripleTOF 5600 Golizeh, LeBlanc & Sleno (2015) Lekha Sleno Lekha Sleno 2015-11-04
PXD003134 HEK293 Quality Control example dataset - contamination test PRIDE Homo sapiens LTQ Orbitrap Velos Bielow, Mastrobuoni & Kempa (2016) Chris Bielow Stefan Kempa 2015-11-04
PXD001796 Integration of transcriptome and proteome annotation in the naive Ixodes ricinus midgut with genome sequencing PRIDE Ixodes ricinus (Common tick) AB SCIEX TOF/TOF T2D file Cramaro et al. (2015) Wibke Cramaro Claude P Muller 2015-11-04
PXD001345 Enterococcus Faecalis V583 secretome PRIDE Enterococcus faecalis (Streptococcus faecalis) Q Exactive Arntzen MØ et al. (2015) Magnus Arntzen Vincent G. H. Eijsink 2015-11-03
PXD002179 CN-CHPP 2015 Testis Project PRIDE Homo sapiens LTQ Orbitrap Zhang et al. (2015) Bo Wen Siqi Liu 2015-11-03
PXD002457 Characterizing cardiac molecular mechanisms of mammalian hibernation via quantitative proteogenomics. PRIDE Spermophilus tridecemlineatus (Thirteen-lined ground squirrel) LTQ Orbitrap Velos Vermillion et al. (2015) Pratik Jagtap Pratik Jagtap 2015-11-03
PXD002593 Proteome profiling of GC1-spg cells over-expressing DYNLT1 PRIDE Mus musculus Synapt MS Indu et al. (2015) Pradeep Kumar Dr. Pradeep G Kumar 2015-11-03
PXD003133 HEK293 Quality Control example dataset PRIDE Homo sapiens LTQ Orbitrap Velos Bielow, Mastrobuoni & Kempa (2016) Chris Bielow Stefan Kempa 2015-11-02
PXD002525 Dynamic changes of histone H3 marks during Caenorhabditis elegans lifecycle revealed by middle-down proteomics PRIDE Caenorhabditis elegans LTQ Orbitrap Velos Sidoli et al. (2015) Simone Sidoli Ole N. Jensen 2015-11-02
PXD002972 Targeting of SUMO substrates to a Cdc48-Ufd1-Npl4 segregase and STUbL pathway in fission yeast PRIDE Schizosaccharomyces pombe Q Exactive Køhler et al. (2015) Triin Tammsalu Genevieve Thon 2015-10-30
PXD002138 Comparative and quantitative proteomics reveals the adaptive strategies of oyster larvae to ocean acidification PRIDE Crassostrea gigas (Pacific oyster) (Crassostrea angulata) TripleTOF 5600 Dineshram et al. (2015) Dineshram Ramadoss V Thiagarajan 2015-10-29
PXD001250 Cell-type and brain-region resolved mouse brain proteome PRIDE Mus musculus Q Exactive Sharma et al. (2015) Mario Oroshi Prof. Dr. Matthias Mann 2015-10-29
PXD002829 A human interactome in three quantitative dimensions organized by stoichiometries and abundances -- auxiliary dataset PRIDE Homo sapiens , Mus musculus , Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap; Q Exactive Hein et al. (2015) Mario Oroshi Matthias Mann 2015-10-28
PXD002033 Comparative phosphoproteomics reveals the role of AmpC β-lactamase phosphorylation in the clinical imipenem-resistant strain Acinetobacter baumannii SK17 (MaxQuant 1.3 and 1.4) PRIDE Acinetobacter baumannii LTQ Orbitrap Velos Lai et al. (2015) Juo-hsin Lai Juohsin Lai 2015-10-27
PXD002914 Low temperature adaptation in marine Synechococcus PRIDE Synechococcus sp. (strain WH8102), Synechococcus sp. BL107 LTQ Velos Varkey et al. (2015) Deepa Varkey Ian Paulsen 2015-10-27
PXD002293 Saccharomyces cerevisiae mRBPome PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Matia-González, Laing & Gerber (2015) Ana Matia Gonzalez ANDRE P. GERBER 2015-10-26
PXD002226 Caenorhabditis elegans mRBPome PRIDE Caenorhabditis elegans LTQ Orbitrap Velos Matia-González, Laing & Gerber (2015) Ana Matia Gonzalez André P. Gerber 2015-10-26
PXD001897 Proteomics method for secretome analysis of filamentous fungi PRIDE Hypocrea jecorina (strain QM6a) (Trichoderma reesei) Q Exactive Bengtsson et al. (2015) Magnus Arntzen Vincent Eijsink 2015-10-26
PXD003010 Tomato xylem proteome composition following infection by Fusarium oxysporum PRIDE Fusarium oxysporum f. sp. lycopersici, Solanum lycopersicum LTQ Orbitrap Gawehns et al. (2015) Sjef Boeren Sjef Boeren 2015-10-26
PXD001834 Adaptative changes in protein expression and lysine acetylation induced by decreased glutathione levels in astrocytes PRIDE Mus musculus LTQ Orbitrap Elite Pehar et al. (2015) Jennifer Bethard Lauren Ball 2015-10-24
PXD002815 A human interactome in three quantitative dimensions organized by stoichiometries and abundances PRIDE Homo sapiens , Mus musculus LTQ Orbitrap; Q Exactive Hein et al. (2015) Mario Oroshi Matthias Mann 2015-10-24
PXD002476 Arabidopsis chloroplast N-terminome PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Rowland et al. (2015) Elden Rowland Klaas van Wijk 2015-10-22
PXD001497 Proteome Analysis of Actinoplanes sp. SE50/110 PRIDE Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) LTQ Orbitrap Wendler et al. (2015)Wendler et al. (2015) Andreas Otto Andreas Otto 2015-10-21
PXD000347 Quantitation of plasma protein concentrations by mass spectrometry without the use of isotopic standards. PRIDE Homo sapiens Synapt G2 MS Kramer et al. (2015) Gertjan Kramer J.M.F.G. Aerts 2015-10-20
PXD001982 Amphibalanus amphitrite transcriptomics and proteomics - cement proteins PRIDE Amphibalanus amphitrite (Striped barnacle) (Balanus amphitrite) QSTAR Wang et al. (2015) Dasha Leary Dasha Leary 2015-10-20
PXD002566 Characterization and quantification of proteins secreted by single human embryos prior to implantation PRIDE Homo sapiens LTQ Orbitrap Velos Poli et al. (2015) Alessandro Ori Dagan Wells 2015-10-20
PXD002349 On the relationship of protein and mRNA dynamics in vertebrate embryonic development PRIDE Xenopus laevis (African clawed frog) LTQ Orbitrap Velos Peshkin et al. (2015) Martin Wuehr Steven Gygi 2015-10-20
PXD000018 Proteomic analysis of integrin adhesion complex-mediated mechanotransduction PRIDE Mus musculus LTQ Velos; instrument model: LTQ Velos Dataset with its publication pending Adam Byron Adam Byron 2015-10-19
PXD002474 MMP10 degradomics in keratinocytes PRIDE Mus musculus LTQ Orbitrap Velos; Q Exactive Schlage et al. (2015) Ulrich auf dem Keller Ulrich auf dem Keller 2015-10-19
PXD003045 SPE optimization for peptide sample preparation for urine peptidomics PRIDE Homo sapiens LTQ Orbitrap Velos Sigdel et al. (2014) Matthew Monroe Minnie M. Sarwal 2015-10-16
PXD002991 Succination of Tubulin and VDAC2 in the Mouse Brainstem PRIDE Mus musculus LTQ Orbitrap Piroli et al. (2015) Allison Manuel Norma Frizzell Catledge 2015-10-16
PXD002658 Lens Disulfide crosslink PRIDE Homo sapiens , Mus musculus LTQ Orbitrap Elite Fan et al. (2015) Xingjun Fan Xingjun Fan 2015-10-16
PXD002232 Zebrafish embryo_phosphorylation_18O labeling PRIDE Danio rerio (Brachydanio rerio) LTQ Orbitrap Velos Kwon et al. (2015) Oh Kwang Kwon Sangkyu Lee 2015-10-14
PXD001870 Analysis of Plasma Membrane, Endosomal and Cytoplasmic fractions of mouse embryonic fibroblast PRIDE Mus musculus LTQ Orbitrap Velos Alanko et al. (2015) Guillaume Jacquemet Johanna Ivaska 2015-10-14
PXD002865 Pseudomonas aeruginosa cystic fibrosis strains share a core proteome PRIDE Pseudomonas aeruginosa PAO1 TripleTOF 5600 Penesyan et al. (2015) Christoph Krisp Ian Paulsen 2015-10-14
PXD002124 Zebrafish Deyolking Survey PRIDE Danio rerio (Brachydanio rerio) LTQ Orbitrap Velos Rahlouni et al. (2015) Laszlo Prokai Laszlo Prokai 2015-10-14
PXD002758 strawberry leaves lysine acetylation LC-MS/MS PRIDE Strawberry leafy fruit phytoplasma Q Exactive Fang et al. (2015) jun zhu Xianping Fang 2015-10-14
PXD002793 Tumor selective proteotoxicity of verteporfin inhibits colon cancer progression independent of YAP1 PRIDE Homo sapiens Orbitrap Fusion ETD Zhang et al. (2015) Sadeesh Ramakrishnan Yatrik M. Shah 2015-10-14
PXD002669 Pathology tissue-quantitative mass spectrometry analysis to profile histone post-translational modification patterns in patient samples PRIDE Homo sapiens , Mus musculus Q Exactive Noberini et al. (2015) Roberta Noberini Tiziana Bonaldi 2015-10-14
PXD002570 The extracellular vesicles of the helminth pathogen, Fasciola hepatica: biogenesis pathways and cargo molecules involved in parasite pathogenesis PRIDE Fasciola hepatica (Liver fluke) TripleTOF 5600 Cwiklinski et al. (2015) Luz Valero Antonio Marcilla 2015-10-14
PXD002129 Proteomic analysis of integrin adhesion complex disassembly induced by nocodazole PRIDE Homo sapiens LTQ Orbitrap Elite Dataset with its publication pending Jon Humphries Martin J Humphries 2015-10-14
PXD002159 Proteomic analysis of integrin adhesion complex assembly PRIDE Homo sapiens LTQ Velos Dataset with its publication pending Jon Humphries Martin Humphries 2015-10-14
PXD002063 MPP profiling in yeast PRIDE Saccharomyces cerevisiae (Baker's yeast) Q Exactive Burkhart et al. (2015) Julia Maria Burkhart René Zahedi 2015-10-13
PXD002743 DUSP2 dephosphorylates STAT3 at Y705 and S727 residues PRIDE Homo sapiens LTQ Orbitrap Elite Lu et al. (2015) Dan Lu Yuxin Yin 2015-10-13
PXD002928 Mammalian Target of Rapamycin shapes the cytotoxic T cell proteome PRIDE Mus musculus LTQ Orbitrap Velos Hukelmann et al. (2015) Jens Hukelmann Doreen Ann Cantrell 2015-10-13
PXD002775 Extrarenal α-klotho expression in human tissues PRIDE Homo sapiens Q Exactive Lim et al. (2015) Laurent Gatto Kathryn Lilley 2015-10-13
PXD001066 Reference proteome of highly purified human Th1 cells reveals strong effects on metabolism and protein ubiquitination upon differentiation PRIDE Homo sapiens LTQ Orbitrap Velos Pagani et al. (2015) Janina Tomm Martin von Bergen 2015-10-13
PXD002731 Secretome profiling of Cryptococcus neoformans reveals regulation of a subset of virulence-associated proteins and potential biomarkers by protein kinase A PRIDE Cryptococcus neoformans var. grubii H99W LTQ Orbitrap Geddes et al. (2015) Jennifer Geddes-McAlister Jim Kronstad 2015-10-13
PXD002656 Dithiothreitol (DTT) acts as a specific, UV-inducible cross-linker in elucidation of protein-RNA interactions PRIDE Homo sapiens , Saccharomyces cerevisiae (Baker's yeast) Q Exactive; LTQ Orbitrap Velos Zaman et al. (2015) Uzma Zaman Henning Urlaub 2015-10-13
PXD003040 The SILAC fly allows for accurate protein quantification in vivo PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap Sury, Chen & Selbach (2010) Jia-Xuan Chen Matthias Selbach 2015-10-12
PXD002028 Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multi-algorithm Pipeline PRIDE Plutella xylostella (Diamondback moth) (Plutella maculipennis) LTQ Orbitrap Velos Dataset with its publication pending Xun Zhu Xun Zhu 2015-10-12
PXD000766 Plasma protein corona on superparamagnetic iron oxide nanoparticles (SPIONs) PRIDE Homo sapiens LTQ Orbitrap Velos Vogt et al. (2015) Maria Pernemalm Janne Lehtiö 2015-10-12
PXD000498 The quantitative and condition-dependent Escherichia coli proteome PRIDE Escherichia coli LTQ Orbitrap Elite Schmidt et al. (2015) Alexander Schmidt Alexander Schmidt 2015-10-12
PXD001934 Cdc42 controls DC-maturation PRIDE Mus musculus LTQ Orbitrap Velos Schulz et al. (2015) Stephan Mueller Thomas Brocker 2015-10-12
PXD001514 BACE1 KO mouse CSF LC-MSMS PRIDE Mus musculus Q Exactive Dislich et al. (2015) Stephan Mueller Stefan Lichtenthaler 2015-10-12
PXD003024 Proteomics of Cerebrospinal Fluid: Throughput and Robustness Using a Scalable Automated Analysis Pipeline for Biomarker Discovery PRIDE Homo sapiens LTQ Orbitrap Elite Núñez Galindo, Kussmann & Dayon (2015) LOIC DAYON Loïc Dayon 2015-10-09
PXD003015 Mouse bone marrow derived neutrophils, LC-MSMS PRIDE Mus musculus LTQ Orbitrap Velos Haurogné et al. (2015) Blandine Lieubeau Jean-Marie BACH 2015-10-09
PXD000914 Protrusion vs Cell-body SILAC proteomics PRIDE Homo sapiens LTQ Orbitrap Velos Mardakheh et al. (2015) Faraz Mardakheh Christopher J. Marshall 2015-10-09
PXD003019 Identification of AMPK phosphorylation sites reveals a network of proteins involved in cell invasion and facilitates large-scale substrate prediction PRIDE Homo sapiens LTQ Orbitrap Velos Schaffer et al. (2015) Rebecca Levin Kevan M. Shokat 2015-10-09
PXD002649 Protrusion vs Cell-body pulsed-SILAC proteomics PRIDE Homo sapiens , Mus musculus LTQ Orbitrap Velos Mardakheh et al. (2015) Faraz Mardakheh Christopher J Marshall 2015-10-09
PXD002840 Fusarium graminearum in vitro cellular proteome PRIDE Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (Wheat head blight fungus) (Fusarium graminearum) LTQ Orbitrap Elite Lowe et al. (2015) Rohan Lowe Marilyn Anderson 2015-10-08
PXD001687 Temporary Organ Specific Quantitative Proteomic Analysis of Soybean under Flooding and Drought Stresses PRIDE Glycine max (Glycine hispida) LTQ Orbitrap Wang et al. (2015) Wang Xin Setsuko Komatsu 2015-10-06
PXD002786 Fusarium graminearum in vitro secretome PRIDE Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (Wheat head blight fungus) (Fusarium graminearum) LTQ Orbitrap Elite Lowe et al. (2015) Rohan Lowe Marilyn Anderson 2015-10-06
PXD002434 Deep Proteomic Profiling of Vasopressin-Sensitive Collecting Duct Cells PRIDE Mus musculus LTQ Orbitrap Elite Yang et al. (2015)Yang et al. (2015) CHIN-RANG YANG Mark A. Knepper 2015-10-06
PXD002982 Mouse lung proteome response to a wild type infectious clone of H7N9 Influenza virus and mutants PRIDE Mus musculus LTQ Orbitrap; Exactive Dataset with its publication pending Matthew Monroe Thomas Metz 2015-10-06
PXD001511 Comparison of different sample preparation protocols reveals lysis buffer specific extraction biases in gram-negative bacteria and human cells PRIDE Homo sapiens , Pseudomonas aeruginosa PAO1 LTQ Orbitrap Velos; LTQ Orbitrap Elite Glatter, Ahrné & Schmidt (2015) Timo Glatter Alexander Schmidt 2015-10-06
PXD002798 Hb Oxidation in stored RBCs and Vesicles PRIDE Homo sapiens LTQ Orbitrap Velos Wither et al. (2015) Matthew Wither Angelo D'Alessandro 2015-10-05
PXD002397 Helianthus annuus (sunflower) allergen identification by mass spectrometry PRIDE Helianthus annuus (Common sunflower) autoflex; maXis Ghosh et al. (2015) Nandini Ghosh Swati Gupta Bhattacharya 2015-10-05
PXD002181 Metabolic pathways affected by Anaplasma in tick cells PRIDE Ixodes scapularis (Black-legged tick) (Deer tick) LTQ Villar et al. (2015) Margarita Villar Margarita Villar 2015-10-05
PXD002064 Sinorhizobium meliloti Ser/Thr/Tyr phosphoproteome PRIDE Rhizobium meliloti (Ensifer meliloti) (Sinorhizobium meliloti) TripleTOF 5600 Liu, Tian & Chen (2015) Chang Fu Tian Chang Fu TIAN 2015-10-05
PXD001646 E. coli source tracking PRIDE Escherichia coli LTQ Shao et al. (2015) Wenguang Shao Henry Lam 2015-10-05
PXD001956 Gingras_Mui_E4orf4_interactions_P107_V5 MassIVE Homo sapiens, Human adenovirus 5 LTQ Orbitrap Velos; LTQ Orbitrap Elite Mui et al. (2015) Gingras Lab Anne-Claude gingras 2015-10-05
PXD001714 Aging Yeast PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Janssens et al. (2015) Alexander Schmidt Alexander Schmidt 2015-10-05
PXD002220 LPS-stimulated endothelial cells using SILAC PRIDE Homo sapiens LTQ FT Kwon et al. (2015) Oh Kwang Kwon Sangkyu Lee 2015-10-05
PXD002668 Isolation of extracellular vesicles by PROSPR PRIDE Homo sapiens Q Exactive; LTQ Orbitrap Elite Gallart-Palau et al. (2015) Xavier Gallart Palau Siu Kwan Sze 2015-10-05
PXD002467 Integrated Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration in Old Rats PRIDE Rattus norvegicus LTQ Orbitrap Velos Dataset with its publication pending Alessandro Ori Martin Beck 2015-10-05
PXD001887 Deep, quantitative coverage of the lysine acetylome using novel anti-acetyl-lysine antibodies MassIVE Homo sapiens, Mus musculus Q Exactive; LTQ Orbitrap Elite Dataset with its publication pending Karl Clauser Steven A. Carr 2015-10-02
PXD002707 LC-MS/MS analysis of IαI proteoglycopeptides PRIDE Homo sapiens Q Exactive Gomez Toledo et al. (2015) Alejandro Gómez Göran Larson 2015-10-02
PXD000304 DNMT DKO proteomic analyses PRIDE Homo sapiens instrument model: Orbitrap_Velos; LTQ Orbitrap Velos; instrument model: LTQ-Orbitrap(2011) Koch et al. (2014) Jolien Hollebeke Jolien Hollebeke 2015-10-02
PXD002867 Peptidomics of circular cysteine-rich plant peptides – Analysis of the diversity of cyclotides from Viola tricolor by transcriptome- and proteome-mining PRIDE Viola tricolor subsp. tricolor, Viola tricolor Bruker Daltonics micrOTOF series Hellinger et al. (2015) Roland Hellinger Christian W. Gruber 2015-10-02
PXD001566 Macrophage migration inhibitory factor - a therapeutic target in gallbladder cancer PRIDE Homo sapiens LTQ Orbitrap Velos Subbannayya et al. (2015) Akhilesh Pandey Akhilesh Pandey 2015-10-02
PXD002285 Paracoccidioides response to antifungal argentilactone PRIDE Paracoccidioides lutzii (strain ATCC MYA-826 / Pb01) (Paracoccidioides brasiliensis) Synapt MS Prado et al. (2015) Alexandre Bailao Alexandre Melo Bailao 2015-10-02
PXD002053 Breast cancer exosome protein profiling using TMT quantitation and SVM analysis PRIDE Homo sapiens LTQ Orbitrap Clark et al. (2015) David Clark Austin Yang 2015-10-02
PXD002134 RDEB Mouse Model PRIDE Mus musculus LTQ Orbitrap Nyström et al. (2015) Joern Dengjel Joern Dengjel 2015-10-02
PXD001636 RhoA ko BMDC PRIDE Mus musculus LTQ Orbitrap Velos Li et al. (2015) Shuai Li Thomas Brocker 2015-10-01
PXD002900 Mouse Seminal Vesicle Preparations PRIDE Mus musculus LTQ Orbitrap Velos Ramm et al. (2015) Dean Hammond Paula Stockley 2015-10-01
PXD002831 Systems-level organisation of yeast methylotrophic lifestyle - organelle preparation PRIDE Komagataella pastoris DSMZ 70382 maXis Rußmayer et al. (2015) Clemens Gruber Friedrich Altmann 2015-10-01
PXD002036 Systems-level organisation of yeast methylotrophic lifestyle PRIDE Komagataella pastoris DSMZ 70382 maXis Rußmayer et al. (2015) Clemens Gruber Friedrich Altmann 2015-10-01
PXD002813 Human prion disease iTRAQ PRIDE Homo sapiens Q Exactive Chen et al. (2015) Xiaoping Dong Xiaoping Dong 2015-10-01
PXD002856 Soybean, Root, LC-MSMS PRIDE Glycine soja (Wild soybean) Q Exactive Pi et al. (2015) Erxu Pi Erxu Pi 2015-10-01
PXD000570 Substrate specificity divergence of granzyme tryptases. PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Plasman et al. (2014) Pieter-Jan De Bock Kris Gevaert 2015-09-30
PXD002802 Uncovering hidden layers of cell cycle regulation through integrative multi-omic analysis PRIDE Homo sapiens Q Exactive Aviner et al. (2015) Tamar Geiger Dr.Tamar Geiger 2015-09-30
PXD000636 A conserved AAA+ ATPase network regulates endoplasmic reticulum stress-induced transcription PRIDE Caenorhabditis elegans instrument model: LTQ Orbitrap XL; LTQ Orbitrap XL Marza et al. (2015) Dupuy Jean-William Chevet Eric 2015-09-30
PXD002557 Akt2 partners L6 myoblasts PRIDE Rattus norvegicus LTQ Orbitrap Elite Caruso et al. (2015) Michael Caruso Zhengping Yi 2015-09-30
PXD001900 Multiplexed, scheduled high resolution sMRM-HR acquisition on full scan MS/MS instruments MassIVE Bos taurus, Saccharomyces cerevisiae, Escherichia coli TripleTOF 5600 Schilling et al. (2015) Birgit Schilling Bradford W. Gibson 2015-09-29
PXD002265 Active Site Specificity Profiling of the Matrix Metalloproteinase Family: Proteomic Identification of 4,300 Cleavage Sites by MMPs 1, 2, 3, 7, 8, 9, 12, 13, and 14. PRIDE Homo sapiens QSTAR Pulsar; QSTAR XL Eckhard et al. (2015) Ulrich ECKHARD Prof. Christopher Mark Overall 2015-09-29
PXD002571 Tissue and organ matrix arrays for high throughput screening and systems analysis of cell function PRIDE Sus scrofa domesticus (domestic pig) Q Exactive; LTQ Orbitrap Velos Beachley et al. (2015) Akhilesh Pandey Jennifer H. Elisseeff 2015-09-28
PXD001435 Cervicovaginal dysbiosis is associated with significant changes in the cervicovaginal proteome related to immune activation and increased cell death PRIDE Homo sapiens LTQ Orbitrap Velos Borgdorff et al. (2015) Stuart Armstrong Jonathan M. Wastling 2015-09-25
PXD002442 Serum glycoprotein biomarker discovery and qualification pipeline reveals novel diagnostic biomarkers for esophageal adenocarcinoma PRIDE Homo sapiens 6520 Quadrupole Time-of-Flight LC/MS Shah et al. (2015) Alok Shah Dr. Michelle M. Hill 2015-09-25
PXD000546 Deciphering thylakoid microdomains using a mass spectrometry-based approach PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Tomizioli et al. (2014) Hesse Anne-Marie Myriam Ferro 2015-09-23
PXD002956 Comparative Proteomic Profiling of cranial (superior) cervical ganglia (CCG) from horses with the multiple system neuropathy – equine grass sickness (EGS) PRIDE Equus caballus LTQ Orbitrap Velos McGorum et al. (2015) Douglas Lamont Thomas M. Wishart 2015-09-23
PXD002870 Protein Turnover Rates in Normal and Hypertrophy Mouse Hearts PRIDE Mus musculus LTQ Orbitrap Elite Lau et al. (2016) Edward Lau Peipei Ping 2015-09-22
PXD002609 Quantitative Phosphoproteomics reveals new roles for PP6 in chromosome condensation and segregation MassIVE Homo sapiens Orbitrap Fusion; instrument model: Q Exactive Plus Dataset with its publication pending Mark Adamo Arminja Kettenbach 2015-09-22
PXD001298 B. subtilis phosphoproteome PRIDE Bacillus subtilis subsp. subtilis str. 168 Q Exactive; TripleTOF 5600 Lin, Sugiyama & Ishihama (2015) Miao-Hsia Lin Miao-Hsia Lin 2015-09-22
PXD001264 Bacterial phosphoproteome PRIDE Escherichia coli TripleTOF 5600 Lin, Sugiyama & Ishihama (2015) Miao-Hsia Lin Miao-Hsia Lin 2015-09-22
PXD001263 K. pneumoniae phosphoproteome PRIDE Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 Q Exactive; TripleTOF 5600 Lin, Sugiyama & Ishihama (2015) Miao-Hsia Lin Miao-Hsia Lin 2015-09-22
PXD001942 Quantitative interaction proteomics of neurodegenerative disease proteins PRIDE Homo sapiens LTQ Orbitrap; LTQ Orbitrap Velos Hosp et al. (2015) Mario Oroshi Matthias Selbach 2015-09-22
PXD001764 The dataset to discover ESCC related proteins PRIDE Homo sapiens TripleTOF 5600 Hou et al. (2015) Xue Hou siqi liu 2015-09-22
PXD002208 O-GlcNAc proteome of invasive ductal breast carcinomas PRIDE Homo sapiens Q Exactive Jiang et al. (2015) Kuan Jiang Kuan Jiang 2015-09-22
PXD001692 Protein Structure Determination in Biological Matrices by Mass Spectrometry and Computational Biology PRIDE Homo sapiens LTQ Orbitrap Velos Belsom et al. (2015) Adam Belsom Juri Rappsilber 2015-09-22
PXD002953 Secreted Proteins of Escherichia coli Serotypes O157:H7 and O104:H4 Cultured in Minimal Medium MassIVE Escherichia coli LTQ Orbitrap XL Dataset with its publication pending Nazrul Islam 2015-09-21
PXD002105 California sea lion cerebrospinal fluid LC-MS/MS PRIDE Zalophus californianus (California sealion) TripleTOF 5600 Neely et al. (2015) Benjamin Neely Michael G. Janech 2015-09-21
PXD002311 Proteogenomics of Gammarus roeseli ovaries PRIDE Gammarus roeselii LTQ Orbitrap Trapp et al. (2015) Jean ARMENGAUD Jean Armengaud 2015-09-21
PXD002310 Proteogenomics of Parhyale hawaiensis ovaries PRIDE Parhyale hawaiensis LTQ Orbitrap Trapp et al. (2015) Jean ARMENGAUD Jean Armengaud 2015-09-21
PXD002309 Proteogenomics of Gammarus pulex ovaries PRIDE Gammarus pulex LTQ Orbitrap Trapp et al. (2015) Jean ARMENGAUD Jean Armengaud 2015-09-21
PXD002308 Proteogenomics of Hyalella azteca ovaries PRIDE Hyalella azteca LTQ Orbitrap Trapp et al. (2015) Jean ARMENGAUD Jean Armengaud 2015-09-21
PXD002365 The Lipid Raft Proteome of Borrelia burgdorferi. PRIDE Borrelia burgdorferi B31 LTQ Orbitrap Toledo et al. (2015) Alvaro Toledo Jorge Benach 2015-09-21
PXD002509 Outer membrane vesicle proteome of Aggregatibacter actinomycetemcomitans serotype e strain 173 PRIDE Aggregatibacter actinomycetemcomitans (Actinobacillus actinomycetemcomitans) (Haemophilus actinomycetemcomitans) Synapt MS Kieselbach et al. (2015) Thomas Kieselbach Thomas Kieselbach 2015-09-21
PXD002676 Proteomic and bioinformatic analysis of the nuclear intrinsically disordered proteome PRIDE Homo sapiens micrOTOF-Q II Skupien-Rabian et al. (2015) Bozena Skupien-Rabian Sylwia Kedracka-Krok 2015-09-21
PXD002253 Proteogenomics of Gammarus fossarum ovaries PRIDE Gammarus fossarum LTQ Orbitrap Trapp et al. (2015) Jean ARMENGAUD Jean Armengaud 2015-09-21
PXD002605 Tracking the dynamic relationship between cellular systems and extracellular subproteomes in Pseudomonas aeruginosa biofilms PRIDE Pseudomonas aeruginosa PAO1 Q Exactive Park et al. (2015) Jonathan Krieger Cezar M. Khursigara 2015-09-21
PXD002428 DDX3Y and other Male Specific Region of Y Chromosome Genes may modulate neuronal differentiation and mediate various biological pathways in addition to their well described role regulating spermatogenesis PRIDE Homo sapiens LTQ Vakilian et al. (2015) Mehdi Mirzaei Ghasem Hosseini Salekdeh 2015-09-17
PXD001297 The Nuclear Proteome of a Vertebrate PRIDE Xenopus laevis (African clawed frog) Q Exactive Wühr et al. (2015) Martin Wuehr Steven Gygi 2015-09-17
PXD002804 Repairing oxidatively damaged proteins using electrons from the respiratory chain PRIDE Escherichia coli LTQ Gennaris et al. (2015) Didier Vertommen Jean-François Collet 2015-09-16
PXD002127 Phosphoproteome of PINK1 in HEK293 cells PRIDE Homo sapiens LTQ Orbitrap Velos Lai et al. (2015) Matthias Trost Matthias Trost 2015-09-16
PXD001986 Deciphering molecular consequences of the prohormone convertase 1/3 inhibition in macrophages for application in immunotherapy - Secretomes PRIDE Rattus norvegicus Q Exactive Duhamel et al. (2015) Maxence Wisztorski Michel Salzet 2015-09-15
PXD000885 Analysis of acetylation stoichiometry suggests that SIRT3 repairs nonenzymatic acetylation lesions PRIDE Mus musculus LTQ Orbitrap Velos; Q Exactive Weinert et al. (2015) Brian Weinert Chuna Choudahary 2015-09-15
PXD002473 Improving Genome Annotation of Enterotoxigenic Escherichia coli TW10598 by a Label-Free Quantitative MS/MS Approach PRIDE Escherichia coli LTQ Orbitrap Velos Pettersen, Steinsland & Wiker (2015) Veronika Kucharova Harald G. Wiker 2015-09-15
PXD002652 Lingula anatina shell proteome PRIDE Lingula anatina LTQ Luo et al. (2015) Takeshi Takeuchi Noriyuki Satoh 2015-09-15
PXD002454 Global quantitative proteomic analysis of human glioma cells profiled host protein expression in response to enterovirus type 71 infection PRIDE Homo sapiens TripleTOF 5600 Zhang et al. (2015) Lei-Ke Zhang Lei-Ke Zhang 2015-09-15
PXD000055 Casein Kinase 1 functions in eukaryotic non-transcriptional time keeping PRIDE Ostreococcus tauri LTQ Orbitrap; instrument model: LTQ Orbitrap Konícková, Matĕjícek & Vrabec (1973) Thierry Le Bihan Thierry Le Bihan 2015-09-15
PXD002378 Quantitative cross-linking analysis of chemoresistant HeLa cells PRIDE Homo sapiens LTQ FT Chavez et al. (2015) Juan Chavez James E. Bruce 2015-09-15
PXD002409 Systematic optimization of C-TAILS approach for deep screening of C-terminomics PRIDE Escherichia coli LTQ Orbitrap Elite Zhang et al. (2015) yang zhang xumin zhang 2015-09-15
PXD001951 The haemolymph proteome of Mytilus edulis: insights into the circulatory system and innate immunity of marine mussels PRIDE Mytilus edulis (Blue mussel) LTQ Orbitrap Velos Campos et al. (2015) Alexandre Campos Susana Cristobal 2015-09-14
PXD001391 Metastasis-related Intracellular Proteins in Human Breast Cancer Cells PRIDE Homo sapiens Waters instrument model Lund et al. (2015) Rikke Raaen Lund Henrik Jørn Ditzel 2015-09-14
PXD000963 Proteins from formalin-fixed paraffin-embedded prostate cancer sections that predict the risk of metastatic disease PRIDE Homo sapiens 4800 Proteomics Analyzer Dunne et al. (2015) Danyl Mclauchlan Bill Jordan 2015-09-14
PXD002556 Comparative proteome analysis across non-small cell lung cancer cell lines PRIDE Homo sapiens LTQ Orbitrap Grundner-Culemann et al. (2015) Kathrin Grundner-Culemann Henrik Daub 2015-09-14
PXD002880 mRNA binding PRIDE Homo sapiens LTQ Orbitrap Castello et al. (2012) Sophia Foehr Jeroen Krijgsveld 2015-09-11
PXD001830 Phosphorylation of Cohesin's Deposition Factor, Scc2 Regulates its Deposition Activity PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Woodman et al. (2015) Matthew Wither Paul C. Megee 2015-09-10
PXD002150 An integrated systems biology approach reveals positive and negative effects of suberoylanilide hydroxamic acid (SAHA) on HIV reactivation from latency PRIDE Homo sapiens LTQ Orbitrap Elite White et al. (2015) Harvey Johnston Spiros D. Garbis 2015-09-10
PXD000772 Temporal and ligand effects on phagosome maturation PRIDE Mus musculus LTQ Orbitrap Velos Dill et al. (2015) Matthias Trost Matthias Trost 2015-09-10
PXD002299 Protein ubiquitination in Aspergillus nidulans PRIDE Aspergillus Q Exactive Chu, Feng & Ying (2015) Sheng-hua Ying Sheng-hua Ying 2015-09-10
PXD002374 Mollivirus sibericum infection cycle characterization PRIDE unidentified Q Exactive Legendre et al. (2015) Yohann Couté Bruley 2015-09-10
PXD002375 Mollivirus sibericum particle characterization PRIDE unidentified LTQ Orbitrap Velos; Q Exactive Legendre et al. (2015) Yohann Couté Bruley 2015-09-10
PXD001984 Deciphering molecular consequences of the prohormone convertase 1/3 inhibition in macrophages for application in immunotherapy - Cellular Extracts PRIDE Rattus norvegicus Q Exactive Duhamel et al. (2015) Maxence Wisztorski Michel Salzet 2015-09-09
PXD002157 Proteomic characterization of the role of Snail1 in the differentiation of mesenchymal stem cell PRIDE Mus musculus LTQ Orbitrap Velos Peláez-García et al. (2015)Peláez-García et al. (2015) Alberto Pelaez Garcia Functional Proteomics 2015-09-09
PXD002396 Proteomic analysis of Nitric Oxide-related Post-translational modifications of PYR/PYL/RCAR receptors of ABA in Arabidopsis thaliana PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Castillo et al. (2015) Jose Leon Jose Leon 2015-09-09
PXD002170 Comparative analysis of label-free and 8-plex iTRAQ approach for quantitative tissue proteomic analysis PRIDE Homo sapiens LTQ Orbitrap Velos Latosinska et al. (2015) Agnieszka Latosinska Dr Antonia Vlahou 2015-09-09
PXD002130 Spatial differentiation of gene expression in Aspergillus niger colony grown for sugar beet pulp utilization PRIDE Aspergillus niger LTQ Orbitrap Benoit et al. (2015) Harm Post Ronald Peter de Vries 2015-09-09
PXD002331 Cx43-interaction network in the heart PRIDE Rattus norvegicus TripleTOF 5600 Martins-Marques et al. (2015) Sandra Anjo Bruno Manadas 2015-09-09
PXD002484 2-DE proteomics analysis of drought treated seedlings of Quercus ilex PRIDE Quercus ilex (Holly oak) 4800 Proteomics Analyzer Simova-Stoilova et al. (2015) J. Alberto Medina-Aunon Jesus Jorrin Novo 2015-09-09
PXD002075 ESCRTIII-associated protein AtALIX mediates high affinity phosphate transporter trafficking to maintain phosphate homeostasis in Arabidopsis PRIDE Arabidopsis thaliana (Mouse-ear cress) 4800 Proteomics Analyzer Cardona-López et al. (2015) J. Alberto Medina-Aunon Vicente Rubio Muñoz 2015-09-09
PXD002096 The influence of simulated microgravity on the proteome of Daphnia magna PRIDE Daphnia magna LTQ Dataset with its publication pending Kathrin Otte Georg Arnold 2015-09-09
PXD002052 Machine Learning Based Classification of Diffuse Large B-cell Lymphoma Patients by their Protein Expression Profiles PRIDE Homo sapiens Q Exactive Deeb et al. (2015) Sally Deeb Matthias Mann 2015-09-09
PXD002263 Identification of proteins interacting with extracellularly applied α-syn assemblies, Condition 4 - biological replicates (8/8) PRIDE Rattus norvegicus LTQ Orbitrap Shrivastava et al. (2015) Virginie Redeker Virginie Redeker; Ronald Melki 2015-09-07
PXD002262 Identification of proteins interacting with extracellularly applied α-syn assemblies, Condition 4 - controls (7/8) PRIDE Rattus norvegicus LTQ Orbitrap Velos Shrivastava et al. (2015) Virginie Redeker Virginie Redeker; Ronald Melki 2015-09-07
PXD002261 Identification of proteins interacting with extracellularly applied α-syn assemblies, Condition 3 - biological replicates (6/8) PRIDE Rattus norvegicus LTQ Orbitrap Velos Shrivastava et al. (2015) Virginie Redeker Virginie Redeker; Ronald Melki 2015-09-07
PXD002260 Identification of proteins interacting with extracellularly applied α-syn assemblies, Condition 3 - controls (5/8) PRIDE Rattus norvegicus LTQ Orbitrap Velos Shrivastava et al. (2015) Virginie Redeker Virginie Redeker; Ronald Melki 2015-09-07
PXD002259 Identification of proteins interacting with extracellularly applied α-syn assemblies, Condition 2 - biological replicates (4/8) PRIDE Rattus norvegicus LTQ Orbitrap Velos Shrivastava et al. (2015) Virginie Redeker Virginie Redeker; Ronald Melki 2015-09-07
PXD002258 Identification of proteins interacting with extracellularly applied α-syn assemblies, Condition 2 - controls (3/8) PRIDE Rattus norvegicus LTQ Orbitrap Velos Shrivastava et al. (2015) Virginie Redeker Virginie Redeker; Ronald Melki 2015-09-07
PXD002257 Identification of proteins interacting with extracellularly applied α-syn assemblies, Condition 1 - biological replicates (2/8) PRIDE Rattus norvegicus LTQ Orbitrap Velos Shrivastava et al. (2015) Virginie Redeker Virginie Redeker; Ronald Melki 2015-09-07
PXD002256 Identification of proteins interacting with extracellularly applied α-syn assemblies, Condition 1 - controls (1/8) PRIDE Rattus norvegicus LTQ Orbitrap Velos Shrivastava et al. (2015) Virginie Redeker Virginie Redeker; Ronald Melki 2015-09-07
PXD002578 Rat liver ESI-MS/MS PRIDE Rattus norvegicus electrospray ionization You et al. (2015) Young-Ah You Young-Ah, You 2015-09-07
PXD002440 Non-targeted LC-MS approach for identifying ancient proteins PRIDE Lagomorpha, Sciuridae, Meleagris gallopavo (Common turkey) LTQ Orbitrap Dataset with its publication pending Dale Chaput Steven Wolverton 2015-09-07
PXD002025 Liver lipid metabolism is altered by increased circulating estrogen to androgen ratio in the liver of male mouse PRIDE Mus musculus LTQ Orbitrap Velos Pursiheimo et al. (2015)Vehmas et al. (2015) Anni Vehmas Garry L. Corthals 2015-09-03
PXD002099 Optimization of statistical methods impact on quantitative proteomics data PRIDE Candida albicans LTQ Orbitrap Velos Pursiheimo et al. (2015) Anni Vehmas Laura L. Elo 2015-09-03
PXD002076 A piRNA like small RNA interacts with and modulates p-ERM proteins in human somatic cells PRIDE Homo sapiens LTQ Orbitrap Mei et al. (2015) David Clark Li Mao 2015-09-03
PXD002596 Androgen Receptor Activity is Regulated Through the Mobilization of Cell Surface Receptor Networks PRIDE Homo sapiens LTQ Hsiao et al. (2015) Jordy Hsiao Michael, Eugene, Wright 2015-09-03
PXD002496 Selective phospohorylation of macrophage differentiation PRIDE Homo sapiens LTQ Orbitrap Zhang, Qian & Ravasi (2015) Huoming Zhang Huoming Zhang 2015-09-02
PXD002835 Proteomic Analysis of Wildtype and mutant ALG-1 in C. elegans MassIVE Caenorhabditis elegans LTQ Orbitrap XL Dataset with its publication pending James Wohlschlegel Victor Ambros 2015-09-01
PXD000794 Regulatory T-cell LC-MSMS PRIDE Mus musculus LTQ Orbitrap Velos Barra et al. (2015) Jenny Hansson Jeroen Krijgsveld 2015-09-01
PXD002772 Structural determinants of heparin–transforming growth factor-β1 interactions and their effects on signalling PRIDE Homo sapiens LTQ Orbitrap Velos Lee et al. (2015) Rachel Li Victor Nurcombe; Simon COOL 2015-09-01
PXD002115 Proteomic map of the unsequenced kala-azar vector Phlebotomus papatasi PRIDE Phlebotomus papatasi LTQ Orbitrap Velos Pawar et al. (2015) Akhilesh Pandey Akhilesh Pandey 2015-08-31
PXD002483 EV71 proteomics PRIDE Homo sapiens TripleTOF 5600 Li et al. (2015) Haoyu Li Lin Guo 2015-08-31
PXD002005 Proteomic analysis of the effect of aluminum oxide nanoparticles on soybean root under flooding stress PRIDE Glycine max (Glycine hispida) LTQ Orbitrap Mustafa, Sakata & Komatsu (2015) Ghazala Mustafa Setsuko Komatsu 2015-08-31
PXD001977 Alterations in the sputum proteome and transcriptome in smokers and early-stage COPD patients PRIDE Homo sapiens Q Exactive Titz et al. (2015) Bjoern Titz Julia Hoeng 2015-08-28
PXD002559 Phosphoproteome Dynamics Mediate Revival of Bacterial Spores PRIDE Bacillus subtilis LTQ Orbitrap Rosenberg et al. (2015) Karsten Krug Boris Macek 2015-08-27
PXD002153 Proteomic changes occurring in Anopheles gambiae and Anopheles stephensi during aging PRIDE Anopheles gambiae (African malaria mosquito), Anopheles stephensi (Asian malaria mosquito) LTQ Orbitrap; ultraflex Sikulu et al. (2015) Keyur Dave Jeffrey J. Gorman 2015-08-26
PXD001960 Epigenetics and Proteomics join Transcriptomics on the quest towards TB Biomarkers PRIDE Homo sapiens LTQ Orbitrap Elite Dataset with its publication pending Etienne Caron Ruedi Aebersold 2015-08-26
PXD001506 Evaluation of iTRAQ and SWATH-MS for the quantification of proteins associated with insulin resistance in human duodenal biopsy samples PRIDE Homo sapiens TripleTOF 5600 Bourassa et al. (2015) Frederic Fournier Arnaud Droit 2015-08-26
PXD001590 Metaproteomics of Optimal vs Suboptimal Biocathode (MCL) PRIDE biofilm metagenome QSTAR Leary et al. (2015) Dasha Leary Dasha Leary 2015-08-26
PXD001500 Quantitative proteomics of Hematopoietic Stem Cells during acute inflammation PRIDE Mus musculus LTQ Orbitrap Velos Haas et al. (2015) Jenny Hansson Jeroen Krijgsveld 2015-08-26
PXD002791 Ubiquitin-activated interaction traps (UBAITs) identify E3 ligase binding partners MassIVE Homo sapiens, Saccharomyces cerevisiae LTQ Orbitrap Elite Dataset with its publication pending Andre Bui Jon Huibregtse 2015-08-25
PXD002595 Western black widow major ampullate, minor ampullate, and tubuliform silk gland LC-MSMS, Part 2 PRIDE Latrodectus hesperus (Western black widow spider) LTQ Orbitrap Velos Chaw et al. (2015) Ro Crystal Chaw Cheryl Y Hayashi 2015-08-25
PXD002592 Western black widow major ampullate silk gland and silk fiber LC-MSMS, Part 1 PRIDE Latrodectus hesperus (Western black widow spider) LTQ Orbitrap Velos Chaw et al. (2015) Ro Crystal Chaw Cheryl Y Hayashi 2015-08-25
PXD002140 AG3C glucose starvation time course PRIDE Escherichia coli LTQ Orbitrap Elite Houser et al. (2015) John Houser Claus O. Wilke 2015-08-24
PXD001937 Quantitative Proteomic Analysis of Catharanthus roseus with Induction of Indole Alkaloids PRIDE Catharanthus roseus var. roseus LTQ Orbitrap Zhu et al. (2015) xiaojian Yin Setsuko Komatsu 2015-08-24
PXD002404 Metaproteomic analysis of laboratory-scale floccular and granular biofilms enriched with Accumulibacter phosphatis PRIDE Candidatus Accumulibacter phosphatis LTQ Orbitrap Barr et al. (2015) Bas E. Dutilh Philip L. Bond 2015-08-24
PXD002662 Molecular responses of alveolar epithelial A549 cells to chronic exposure to titanium dioxide nanoparticles: a proteomic view PRIDE Homo sapiens Synapt MS Lucie et al. (2015) Jean-Marc STRUB Thierry, Rabilloud 2015-08-24
PXD001374 Label-free quantitative phosphoproteomics with novel pairwise abundance normalization reveals synergistic RAS and CIP2A signaling PRIDE Homo sapiens Q Exactive Kauko et al. (2015) Susumu Imanishi Susumu Y. Imanishi 2015-08-24
PXD002221 mouse liver microsomes phosphorylation PRIDE Mus musculus LTQ Orbitrap Velos Kwon et al. (2015) Oh Kwang Kwon Sangkyu Lee 2015-08-24
PXD000329 Chemical profiling of live cell temporal redox dynamics in a photoautotrophic cyanobacterium PRIDE Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum) LTQ Orbitrap Sadler et al. (2014) Matthew Monroe Aaron T. Wright 2015-08-24
PXD001017 Senescence 6 PRIDE Homo sapiens LTQ Orbitrap Pasillas et al. (2015) judith coppinger Judith Coppinger 2015-08-21
PXD001016 Senescence 5 PRIDE Homo sapiens LTQ Orbitrap Pasillas et al. (2015) judith coppinger Judith Coppinger 2015-08-21
PXD001015 Senescence 4 PRIDE Homo sapiens LTQ Orbitrap Pasillas et al. (2015) judith coppinger Judith Coppinger 2015-08-21
PXD001014 Senescence 3 PRIDE Homo sapiens LTQ Orbitrap Pasillas et al. (2015) judith coppinger Judith Coppinger 2015-08-21
PXD001013 Senescence 2 PRIDE Homo sapiens LTQ Orbitrap Pasillas et al. (2015) judith coppinger Judith Coppinger 2015-08-21
PXD001012 Senescence 1 PRIDE Homo sapiens LTQ Orbitrap Pasillas et al. (2015) judith coppinger Judith Coppinger 2015-08-21
PXD002770 Deconstruction of protein O-glycosylation PRIDE Homo sapiens LTQ Orbitrap Velos Schjoldager et al. (2015) Sergey Vakhrushev Henrik Clausen 2015-08-21
PXD000525 Candida albicans SC5314 and RMLU2 secretome and vesicle proteins PRIDE Candida albicans LTQ Orbitrap Velos Gil-Bona et al. (2015) Vital Vialas Vital Vialas 2015-08-21
PXD002166 Peroxidase B6T173 (ZmPrx35) from insect-resistant maize (Zea mays, p84C3) kernels PRIDE Zea mays LTQ Dataset with its publication pending Robert Winkler Robert Winkler 2015-08-21
PXD000485 Validation dataset on tamoxifen treated Estrogen Receptor (ER) positive breast cancer patients PRIDE Homo sapiens LTQ Orbitrap De Marchi et al. (2015) Tommaso De Marchi Tommaso De Marchi 2015-08-21
PXD000484 Discovery dataset on tamoxifen treated Estrogen Receptor (ER) positive breast cancer patients PRIDE Homo sapiens LTQ Orbitrap De Marchi et al. (2015) Tommaso De Marchi Tommaso De Marchi 2015-08-21
PXD001726 Venom proteomics of Indonesian king cobra PRIDE Ophiophagus hannah (King cobra) (Naja hannah) LTQ Orbitrap XL Petras et al. (2015) Daniel Petras Roderich Süssmuth 2015-08-20
PXD001727 Use of hide glue in 4th millennium BC Europe PRIDE Bos taurus , Ovis aries Q Exactive 10.1016/j.jas.2015.08.012 Enrico Cappellini Enrico Cappellini 2015-08-20
PXD000212 MCM9 is Required for Mammalian DNA Mismatch Repair PRIDE Homo sapiens LTQ Orbitrap Velos Traver et al. (2015) James Hutchins Marcel Mechali 2015-08-19
PXD001792 High-throughput phosphoproteomics reveals in vivo insulin signaling dynamics PRIDE Mus musculus Q Exactive Humphrey, Azimifar & Mann (2015) Mario Oroshi Matthias Mann 2015-08-19
PXD001060 Fe-IMAC column based phospho enrichment PRIDE Homo sapiens LTQ Orbitrap Velos Ruprecht et al. (2015) Benjamin Ruprecht Prof. Dr. Bernhard Kuster 2015-08-19
PXD002761 Mining the Human Urine Proteome for Monitoring Renal Transplant Injury MassIVE Homo sapiens LTQ Orbitrap Velos 0 Matthew Monroe Minnie M. Sarwal and David G. Camp 2015-08-18
PXD000863 Ion mobility tandem mass spectrometry enhances performance of bottom-up proteomics PRIDE Homo sapiens Synapt MS Helm et al. (2014) Hannes Hahne Bernhard Kuster 2015-08-18
PXD000747 Copy number analysis of the murine platelet proteome spanning the complete abundance range PRIDE Mus musculus Q Exactive Zeiler, Moser & Mann (2014) Nadin Neuhauser Matthias Mann 2015-08-18
PXD002337 F1 allele specific gene expression PRIDE Mus musculus Q Exactive Hou et al. (2015) Erik McShane Matthias Selbach 2015-08-18
PXD002264 Human Dental Pulp TAILS N-terminomics PRIDE Homo sapiens 6520 Quadrupole Time-of-Flight LC/MS Eckhard et al. (2015) Ulrich ECKHARD Prof. Christopher Mark Overall 2015-08-18
PXD002163 Prostasomes PRIDE Homo sapiens LTQ Orbitrap Dubois et al. (2015) Bo Ek Bo Ek 2015-08-18
PXD001496 Proteomic analysis of substantia nigra PRIDE Homo sapiens TripleTOF 5600 Fernández-Irigoyen et al. (2015) Enrique Santamaría Enrique Santamaria 2015-08-17
PXD000805 Nucleus basalis of meynert proteome PRIDE Homo sapiens TripleTOF 5600 Fernández-Irigoyen et al. (2015) Enrique Santamaría Enrique Santamaria 2015-08-17
PXD002062 Fluctuations in histone H4 isoforms during cellular reprogramming monitored by middle-down proteomics PRIDE Mus musculus LTQ Orbitrap Elite Benevento et al. (2015) Marco Benevento Javier Muñoz 2015-08-17
PXD002167 The Proteome of Mouse Vestibular Hair Bundles Over Development PRIDE Mus musculus LTQ Orbitrap Elite Dataset with its publication pending Peter Barr-Gillespie Peter Barr-Gillespie 2015-08-17
PXD002661 Global Metabonomic and Proteomic Analysis of Human Conjunctival Epithelial Cells (IOBA-NHC) in Response to Hyperosmotic Stress PRIDE Homo sapiens TripleTOF 5600 Chen et al. (2015) Liyan Chen Lei Zhou 2015-08-17
PXD002058 Tau interactome PRIDE Homo sapiens Orbitrap Fusion ETD Gunawardana et al. (2015) Gerold Schmitt-Ulms Gerold Schmitt-Ulms 2015-08-17
PXD002730 Multicopy single-stranded DNA directs intestinal colonization of enteric pathogens MassIVE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S LTQ Orbitrap Velos Dataset with its publication pending Matthew Monroe Helene L. Andrews-Polymenis and Josh Adkins 2015-08-14
PXD002107 Glycoproteomic Analyses of Prostate Cancer Cells PRIDE Homo sapiens Q Exactive Shah et al. (2015) Paul Aiyetan Hui Zhang 2015-08-12
PXD002420 Shotgun metaproteomic profiling of biomimetic anaerobic digestion processes treating sewage sludge PRIDE anaerobic digester metagenome Q Exactive Bize et al. (2015) Ariane Bize Théodore Bouchez 2015-08-12
PXD002332 Lysine acetyltransfer supports platelet function PRIDE Homo sapiens Orbitrap Fusion ETD Aslan et al. (2015) Joseph Aslan Owen J. T. McCarty 2015-08-12
PXD001132 Soybean Symbiosome Membrane Proteome PRIDE Glycine max (Glycine hispida) QSTAR Clarke et al. (2015) Victoria Clarke Penny Smith 2015-08-12
PXD001836 Vitrification of embryos modifies foetal placenta proteome. LCMSMS PRIDE Oryctolagus cuniculus algirus TripleTOF 5600 Saenz-de-Juano et al. (2015) Luz Valero Francisco Marco-Jiménez 2015-08-11
PXD001626 Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution PRIDE Homo sapiens Orbitrap Fusion Dataset with its publication pending Szilvia Solyom Haig H. Kazazian, Jr. 2015-08-11
PXD000975 Function of CK2-alpha in a minimal circadian system PRIDE Ostreococcus tauri LTQ Orbitrap Le Bihan et al. (2015) Thierry Le Bihan Thierry Le bihan 2015-08-11
PXD002581 Peanut LC-MS/MS, part 3 of 3 PRIDE Arachis hypogaea LTQ Orbitrap Velos Zhao et al. (2015) Chuanzhi Zhao Xingjun Wang 2015-08-10
PXD002580 Peanut LC-MS/MS, part 2 of 3 PRIDE Arachis hypogaea LTQ Orbitrap Velos Zhao et al. (2015) Chuanzhi Zhao Xingjun Wang 2015-08-10
PXD002579 Peanut LC-MS/MS, part 1 of 3 PRIDE Arachis hypogaea LTQ Orbitrap Velos Zhao et al. (2015) Chuanzhi Zhao Xingjun Wang 2015-08-10
PXD002126 Arabidopsis col and rglg iron deficiency response PRIDE Arabidopsis thaliana (Mouse-ear cress) Q Exactive Pan et al. (2015) I-Chun Pan Wolfgang Schmidt 2015-08-10
PXD000933 HEK293 cells LC-MSMS PRIDE Homo sapiens TripleTOF 5600 Oishi et al. (2015) Stefan Duscha Prof. Dr. Erik Christian Böttger 2015-08-10
PXD001471 Proteomic analysis of cellular soluble proteins from human bronchial smooth muscle cells by combining nondenaturing micro 2DE and quantitative LC-MS/MS: Preparation of more than 4000 native protein maps PRIDE Homo sapiens Synapt G2-S HDMS Jin et al. (2015)Jin et al. (2015) Ya Jin Ya Jin 2015-08-10
PXD002544 RNAi-mediated downregulation of poplar plasma membrane intrinsic proteins (PIPs) changes plasma membrane proteome composition and affects leaf physiology PRIDE Populus canescens (Grey poplar) (Populus tremula x Populus alba) LTQ Orbitrap XL Bi et al. (2015) Juliane Merl-Pham Jörg-Peter Schnitzler 2015-08-10
PXD002137 Proteome Landscapes of the Human Colorectal Mucosa, and its Adenoma and Cancer PRIDE Homo sapiens Q Exactive Wiśniewski et al. (2015) Mario Oroshi Jacek R Wisniewski 2015-08-10
PXD000700 Proteomic analysis of accessory gland in sexually mature Eriocheir sinensis PRIDE Eriocheir sinensis (Chinese mitten crab) LTQ Orbitrap Velos He et al. (2015) Lin He Qun Wang 2015-08-07
PXD001539 Quantitative proteomics of human pancreatic beta cells PRIDE Homo sapiens Synapt MS Brackeva et al. (2015) Gertjan Kramer J.M.F.G. Aerts 2015-08-07
PXD001737 c-Abl Dependent Tyrosine Phosphorylation of theCo-chaperone Aha1 Regulates Interaction with Hsp90 PRIDE Homo sapiens Q Exactive Dunn et al. (2015) Donald Wolfgeher Mehdi Mollapour 2015-08-06
PXD001998 Cooperative target mRNA destabilization and translation inhibition by miR-58 microRNA family in C. elegans PRIDE Caenorhabditis elegans LTQ Orbitrap Elite Subasic et al. (2015) Yibo Wu Yibo Wu 2015-08-06
PXD002388 Proteomic characterization of the interplay of Staphylococcus aureus and human alveolar epithelial cells during infection - host cell proteins PRIDE Homo sapiens LTQ Orbitrap Velos Surmann et al. (2015) Kristin Surmann Uwe Völker 2015-08-05
PXD002384 Proteomic characterization of the interplay of Staphylococcus aureus and human alveolar epithelial cells during infection - S. aureus proteins PRIDE Staphylococcus aureus LTQ Orbitrap Velos Surmann et al. (2015) Kristin Surmann Uwe Völker 2015-08-05
PXD000416 Y chromosome-located gene, lysine-specific demethylase 5D, associated with prostate cancer PRIDE Homo sapiens LTQ Jangravi et al. (2015) Mehdi mirzaei Mehdi mirzaei 2015-08-05
PXD001046 Comparative proteomics analysis of superior and inferior spikelets in hybrid rice during grain filling and response of inferior spikelets to drought stress using isobaric tags for relative and absolute quantification PRIDE Rice(O. sativa) Q Exactive Dong et al. (2014) Minghui Dong Minghui Dong 2015-08-05
PXD000632 FLAG-affinity pulldown experiments with sll1214 and sll1874 from Synechocystis PRIDE Synechocystis sp. (strain PCC 6803 / Kazusa) instrument model: Maxis UHR-TOF Hollingshead et al. (2012) Philip Jackson Philip Jackson 2015-08-05
PXD001817 Uncovering the abilities of Agaricus bisporus to degrade plant biomass throughout its life cycle PRIDE Agaricus bisporus (White button mushroom) Q Exactive Patyshakuliyeva et al. (2015) Harm Post R. P. de Vries 2015-08-05
PXD001816 Quantitative proteomics of rat and human pancreatic beta cells PRIDE Rattus norvegicus Synapt G2 MS Brackeva et al. (2015) Hans Vissers Geert Martens 2015-08-04
PXD001729 Quantitative Phosphoproteomic Identification of Novel Vasopressin-mediated Signaling Networks in Kidney Distal Convoluted Tubule Cells PRIDE Mus musculus Q Exactive Cheng et al. (2015) Qi Wu Robert A. Fenton 2015-08-04
PXD002239 Phosphoproteomic Network Analysis in the Sea Urchin Strongylocentrotus purpuratus Reveals New Candidates in Egg Activation PRIDE Strongylocentrotus purpuratus (Purple sea urchin) LTQ Orbitrap Velos Guo et al. (2015) Hongbo Guo Andrew Emili 2015-08-04
PXD002582 Proteomic analysis reveals distinct metabolic differences between GM-CSF and M-CSF grown macrophages derived from murine bone marrow cells PRIDE Mus musculus Q Exactive 0 Ji Hye Hong Kwang Pyo Kim 2015-08-04
PXD001597 In-depth characterization of the secretome of mouse CNS cell lines by LC-MS/MS without prefractionation PRIDE Mus musculus Q Exactive Woo et al. (2015) Jongmin Woo Youngsoo Kim 2015-08-04
PXD001933 The value of subcellular fractionation for protein identification in a B-cell line (Ramos) PRIDE Homo sapiens LTQ Orbitrap Velos Díez et al. (2015) Paula Díez Manuel Fuentes 2015-08-04
PXD002486 Target identification for 11q13 amplicon PRIDE Homo sapiens LTQ Orbitrap Velos Hoover et al. (2015) Heather Hoover Nancy Finkel 2015-08-04
PXD002034 Fludarabine resistance in Mantle cell lymphoma PRIDE Homo sapiens Q Exactive Dataset with its publication pending Jiri Petrak Jiri Petrak 2015-08-03
PXD001520 Geodermatophilus obscurus DSM43160 proteomics PRIDE Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) LTQ Orbitrap Sghaier et al. (2015) Jean ARMENGAUD Jean Armengaud 2015-08-03
PXD001518 Stone-dwelling actinobacteria Blastococcus saxobsidens, Modestobacter marinus and Geodermatophilus obscurus proteogenomes PRIDE Modestobacter marinus (strain BC501) LTQ Orbitrap Sghaier et al. (2015) Jean ARMENGAUD Jean Armengaud 2015-08-03
PXD001519 Blastococcus saxobsidens DD2 proteomics PRIDE Blastococcus saxobsidens LTQ Orbitrap Sghaier et al. (2015) Jean ARMENGAUD Jean Armengaud 2015-08-03
PXD002641 OR_Pilot-MBARI-OR_Algae PRIDE Chrysotila carteri (Marine alga) (Syracosphaera carterae) Orbitrap Elite Dataset with its publication pending Zhou Li Chongle Pan 2015-08-03
PXD002647 Mouse lung metabolome response to a wild type infectious clone of H7N9 Influenza virus and mutants MassIVE Mus musculus instrument model: GC-MS Dataset with its publication pending Matthew Monroe Yoshihiro Kawaoka, Katrina Waters, Richard Smith and Thomas Metz 2015-07-31
PXD002620 Human Ureter project PRIDE Homo sapiens Q Exactive Magdeldin et al. (2015) sameh MAGDELDIN Tadashi Yamamoto 2015-07-31
PXD002523 Human lung adenocarcinoma tissue LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Kim et al. (2015) Je-Yoel Cho Je-Yoel Cho 2015-07-31
PXD000702 Staphylococcus aureus HG001 PRIDE Staphylococcus aureus Q Exactive Depke et al. (2015) Maren Depke Frank Schmidt 2015-07-31
PXD001495 Mistargeted mitochondrial proteins activate a proteostatic response in the cytosol PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap; LTQ Orbitrap Elite Wrobel et al. (2015) Friedel Drepper Bettina Warscheid 2015-07-31
PXD001160 Mycobacterium tuberculosis extracellular vesicle proteome PRIDE Mycobacterium tuberculosis H37Rv LTQ Orbitrap Velos Lee et al. (2015) Jaewook Lee Yong Song Gho 2015-07-30
PXD002549 MStern Blot - Urinary Biomarker Study PRIDE Homo sapiens Q Exactive Berger et al. (2015) Sebastian Berger Hanno Steen, PhD 2015-07-30
PXD001800 Branch retinal vein occlusion in a porcine model PRIDE Sus scrofa domesticus (domestic pig) Q Exactive Cehofski et al. (2015) Allan Stensballe Allan Stensballe 2015-07-30
PXD002572 MStern Blot vs. FASP - Different sample types PRIDE Homo sapiens TripleTOF 5600 Berger et al. (2015) Sebastian Berger Hanno Steen, PhD 2015-07-30
PXD001786 Proteomics of Alzheimer's Disease mouse models - control dataset PRIDE Mus musculus LTQ Orbitrap Elite Nilsson et al. (2015) Per Nilsson Per Nilsson 2015-07-29
PXD000968 Proteomics of Alzheimer's Disease mouse models PRIDE Mus musculus LTQ Nilsson et al. (2015) Per Nilsson Lars Tjernberg 2015-07-29
PXD002583 Comprehensive computational identification and characterization of conserved small ORFs in animals PRIDE Mus musculus Q Exactive Dataset with its publication pending Henrik Zauber Matthias Selbach 2015-07-28
PXD000599 Phosphoproteomic analysis of breast epithelial cells with isogenic knockin of PIK3CA mutations PRIDE Homo sapiens LTQ Orbitrap Velos Wu et al. (2014) Akhilesh Pandey Akhilesh Pandey 2015-07-28
PXD002563 The quantitative proteome of mouse testicular cord formation PRIDE Mus musculus LTQ Orbitrap Velos Zheng et al. (2015) Tao Zhou Jiahao Sha 2015-07-28
PXD002083 CPTAC, TCGA Cancer Proteome Study of Colorectal Tissue: Proteome, VU, part 4 PRIDE Homo sapiens LTQ Orbitrap Velos Zhang et al. (2014) Nathan Edwards Daniel C. Liebler, Ph.D. 2015-07-28
PXD001547 Metaproteome of the waste water treatment plant Gerwisch/Germany PRIDE Bacteria autoflex Püttker et al. (2015) Fabian Kohrs Dr. Dirk Benndorf 2015-07-27
PXD002224 Mining Missing Membrane Proteins by High-pH Reverse Phase StageTip Fractionation and Validation by Multiple Reaction Monitoring Mass Spectrometry PRIDE Homo sapiens TripleTOF 5600; Synapt MS Kitata et al. (2015) Baby Rorielyn Dimayacyac-Esleta Baby Rorielyn T. Dimayacyac-Esleta 2015-07-27
PXD001712 Gel-free mass spectrometry analysis of Drosophila melanogaster heads PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap Velos Aradska et al. (2015) Jana Aradska Gert Lubec 2015-07-27
PXD001265 Mining potential serum biomarkers for gastric adenocarcinoma using quantitative proteomics PRIDE Homo sapiens LTQ Orbitrap Velos Subbannayya et al. (2015) Akhilesh Pandey Akhilesh Pandey 2015-07-27
PXD001740 Discovering new pneumococcal diagnostic tools protein-based PRIDE Streptococcus pneumoniae LTQ Orbitrap Olaya-Abril et al. (2015) Alfonso Olaya Abril Manuel Jos?? Rodr??guez Ortega 2015-07-27
PXD002070 Comprehensive protein interactome analysis of a key RNA helicase: the detection of novel stress granule proteins PRIDE Homo sapiens LTQ Orbitrap Velos Bish et al. (2015) Nerea Cuevas Polo Christine Vogel 2015-07-27
PXD001192 Regulation of microtubules by DIAPH3 loss influences amoeboid tumor cell sensitivity to taxanes PRIDE Homo sapiens LTQ Orbitrap Elite Morley et al. (2015) Wei Yang Wei Yang 2015-07-27
PXD002539 Proteomic study of fruit exocarp tissue in four cultivars of Vitis Vinifera PRIDE Vitis vinifera LCQ Classic Negri et al. (2015) Luca Espen Luca Espen 2015-07-27
PXD001219 Proteomics analysis of Pseudomonas putida F1: From Early-Exponential to Late-Stationary PRIDE Pseudomonas putida (strain F1 / ATCC 700007) Q Exactive Herbst et al. (2015) Florian-Alexander Herbst Per Halkjær Nielsen 2015-07-24
PXD000673 Psychroflexus torquis 1D LC/MS PRIDE Psychroflexus torquis (strain ATCC 700755 / ACAM 623) LTQ Orbitrap Feng et al. (2015) Shi Feng John Philip Bowman 2015-07-24
PXD001490 Metaproteomics analyses of three chronically petroleum-polluted sites PRIDE environmental samples LTQ Orbitrap Velos Bargiela et al. (2015) Florian-Alexander Herbst Martin von Bergen 2015-07-24
PXD000458 Quantitative proteomics of cryptococcal meningitis brain tissues PRIDE Homo sapiens LTQ Orbitrap Velos Selvan et al. (2015) Akhilesh Pandey 2015-07-24
PXD001805 ISG15 counteracts Listeria monocytogenes infection PRIDE Homo sapiens Q Exactive Radoshevich et al. (2015) Francis Impens Pascale Cossart 2015-07-24
PXD002183 Fgf and Esrrb integrate epigenetic and transcriptional networks that regulate self-renewal of Trophoblast Stem Cells PRIDE Mus musculus LTQ Orbitrap Velos Latos et al. (2015) David Oxley david oxley 2015-07-24
PXD001976 p53-regulated networks of protein, mRNA, miRNA and lncRNA expression revealed by integrated pSILAC and NGS analyses PRIDE Homo sapiens LTQ Orbitrap Elite Hünten et al. (2015) Friedel Drepper Bettina Warscheid 2015-07-23
PXD001610 Proteomic Analysis of the Response to Cell Cycle Arrests in Human Myeloid Leukemia Cells PRIDE Homo sapiens Q Exactive Ly, Endo & Lamond (2015) Vackar Afzal Angus Lamond 2015-07-23
PXD002322 Panorama of ancient metazoan macromolecular complexes: Homo sapiens PRIDE Homo sapiens LTQ XL; LTQ Orbitrap Velos Wan et al. (2015) Blake borgeson Andrew Emili 2015-07-23
PXD001988 cell surface glycoproteome liver and lung PRIDE Homo sapiens LTQ Orbitrap Ducret et al. (2015) Axel Ducret Axel Ducret 2015-07-22
PXD000771 Proteomic characterisation of the salt gland-enriched tissues of the mangrove tree species Avicennia officinalis PRIDE Avicennia TripleTOF 5600 Tan et al. (2015) Qingsong Lin Qingsong Lin 2015-07-22
PXD001983 Proteome-wide analysis of the amino terminal status of Escherichia coli proteins at the steady-state PRIDE Escherichia coli LTQ Orbitrap Bienvenut, Giglione & Meinnel (2015) Willy Bienvenut Willy V Bienvenut 2015-07-22
PXD002290 GRK2 influences the phosphorylation of PER proteins by LC-MS/MS PRIDE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending kerwin chiang Cheng-Kang Chiang 2015-07-21
PXD002040 Proteomic profiling of the extracellular matrix (slime sheath) of Dictyostelium discoideum PRIDE Dictyostelium discoideum (Slime mold) LTQ Huber & O'Day (2015) Robert Huber Robert Joseph Huber 2015-07-21
PXD001765 Time and compartment resolved proteome profiling of the extracellular niche in lung injury and repair PRIDE Mus musculus Q Exactive Schiller et al. (2015) Herbert Schiller Matthias Mann 2015-07-21
PXD002012 Proteome-wide analysis of the amino terminal status of Escherichia coli proteins at the steady-state and upon deformylation inhibition PRIDE Escherichia coli LTQ Orbitrap Bienvenut, Giglione & Meinnel (2015) Willy Bienvenut Willy V. Bienvenut 2015-07-21
PXD001979 Whole lysate and ribosome enriched fractions analyses of the amino terminal status of Escherichia coli at the steady state and upon deformylation inhibition PRIDE Escherichia coli LTQ Orbitrap Bienvenut, Giglione & Meinnel (2015) Willy Bienvenut Willy V Bienvenut 2015-07-21
PXD002395 11 human cell lines PRIDE Homo sapiens LTQ Orbitrap Velos Geiger et al. (2012) Chris Bielow Stefan Kempa 2015-07-21
PXD001291 Integrative Genomics Positions MKRN1 as a Novel Ribonucleoprotein within the Embryonic Stem Cell Gene Regulatory Network PRIDE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Gareth Palidwor Dr. William L. Stanford 2015-07-21
PXD001508 Metaproteomic analysis of a mixed microbial communities extracted from biogas plant sludge PRIDE Zea mays LTQ Orbitrap Elite Kohrs et al. (2015) Fabian Kohrs Dr. Dirk Benndorf 2015-07-21
PXD002577 Acropora digitifera stinging cells toxins MassIVE Acropora digitifera LTQ Orbitrap Velos Dataset with its publication pending Ranko Gacesa Dr Paul F Long 2015-07-21
PXD001436 Metaproteome, Deep Lake, Antarctica PRIDE environmental samples LTQ Orbitrap Velos Tschitschko et al. (2015) Bernhard Tschitschko Prof. Rick Cavicchioli 2015-07-21
PXD001855 Arabidopsis thaliana N-terminal proteome,LC-MS PRIDE Arabidopsis thaliana (Mouse-ear cress) Q Exactive Venne et al. (2015) Fiorella Andrea Solari René Peiman Zahedi 2015-07-20
PXD002400 5 cell lines PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Guido Mastrobuoni Stefan Kempa 2015-07-20
PXD000205 ProteoRed Multicentric Experiment for Proteomics Quality Control PRIDE Saccharomyces cerevisiae BY4741 LTQ Orbitrap Velos; LTQ Orbitrap XL Campos et al. (2015) Salvador Martinez-Bartolome Eliandre de Oliveira 2015-07-20
PXD001607 Proteome profiling of sea star epidermal secretions PRIDE Asterias rubens TripleTOF 5600 Hennebert et al. (2015) Elise Hennebert Igor Eeckhaut 2015-07-20
PXD001617 Global gene expression profiling through the complete life cycle of Trypanosoma vivax PRIDE Trypanosoma vivax (strain Y486) LTQ Orbitrap Velos Dataset with its publication pending Dong Xia Jonathan Wastling 2015-07-20
PXD002244 Mouse bone marrow derived neutrophils, LC-MSMS PRIDE Mus musculus LTQ Orbitrap Velos Haurogné et al. (2015) Blandine Lieubeau Jean-Marie Bach 2015-07-20
PXD002241 USSC secretome PRIDE Homo sapiens LTQ Orbitrap Velos; LTQ Orbitrap Elite Schira et al. (2015) Jessica Schira Jessica Schira 2015-07-20
PXD001484 Douglas fir proteome project PRIDE Pseudotsuga menziesii var. menziesii Q-Tof ultima Dziedzic & McDonald (2015) Jowita Laniak Armando McDoanld 2015-07-20
PXD000564 LC-MS/MS analysis of visceral and subcutaneous adipose tissue proteomes in young goats with focus on innate immunity and inflammation related proteins PRIDE Capra hircus QSTAR Restelli et al. (2014) Laura Restelli Laura Restelli 2015-07-20
PXD001691 An optimised protocol for protein extraction from salt gland-enriched tissues of a mangrove tree species for proteomic analysis PRIDE Avicennia officinalis TripleTOF 5600 Tan et al. (2015) Wee-Kee Tan Lin Qingsong 2015-07-20
PXD002371 Environmental interactions and epistasis are revealed in the proteomic responses to complex stimuli PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Dataset with its publication pending Andrew Link Andrew Link 2015-07-20
PXD001809 Mesenchymal stem cell integrin-associated complexes PRIDE Homo sapiens LTQ Velos; LTQ Orbitrap Elite Ajeian et al. (2015) Jon Humphries Martin J Humphries 2015-07-20
PXD001454 Investigation of human TFIID subcomplexes 7TAF and 8TAF by cross-linking mass spectrometry PRIDE Homo sapiens LTQ Orbitrap Velos Trowitzsch et al. (2015) Juan Zou Juri Rappsilber 2015-07-20
PXD002071 Distinct Serum Proteome Profiles Associated with Collagen-induced Arthritis, and Complete Freund’s Adjuvant-induced Inflammation in CD38-/- mice: the Discriminative Power of Protein Species or Proteoforms. Spot 269_Spot 500 PRIDE Mus musculus ultraflex Rosal-Vela et al. (2015) Antonio Rosal-Vela Jaime 2015-07-17
PXD001799 Distinct Serum Proteome Profiles Associated with Collagen induced Arthritis, and Complete Freund’s Adjuvant-induced Inflammation in CD38-/- mice: the Discriminative Power of Protein Species or Proteoforms. Protein identification by Peptide Mass Fingerpr PRIDE Mus musculus Voyager-DE PRO Rosal-Vela et al. (2015) Antonio Rosal-Vela Jaime Sancho Lopez 2015-07-17
PXD001788 Distinct Serum Proteome Profiles Associated with Collageninduced Arthritis, and Complete Freund’s Adjuvant-induced Inflammation in CD38-/- mice: the Discriminative Power of Protein Species or Proteoforms PRIDE Mus musculus 4800 Proteomics Analyzer Rosal-Vela et al. (2015) Antonio Rosal-Vela Jaime Sancho Lopez 2015-07-17
PXD002131 Franco-Swiss HPP project (Chromosomes 2 and 14) PRIDE Homo sapiens Q Exactive; LTQ Orbitrap Velos Carapito et al. (2015) Emmanuelle Mouton Barbosa Odile Bruley Schiltz 2015-07-17
PXD001665 Mytilus galloprovincialis, sperm, LC-MSMS PRIDE Mytilus galloprovincialis (Mediterranean mussel) LTQ Orbitrap Zhang et al. (2015) Yanjie Zhang QIU Jian-Wen 2015-07-17
PXD001827 Extinct Bison Latifrons Proteomics PRIDE Bos taurus LTQ Orbitrap Velos Hill et al. (2015) Matthew Wither Kirk Charles Hansen 2015-07-16
PXD001840 Vitrification of embryos modifies foetal placenta proteome. MALDI TOF/TOF PRIDE Oryctolagus cuniculus cuniculus TOF/TOF 5800 Saenz-de-Juano et al. (2015) Luz Valero Francisco Marco-Jiménez 2015-07-16
PXD002235 Comparative proteomic analysis of human liver tissue and isolated hepatocytes with a focus on proteins determining drug exposure PRIDE Homo sapiens LTQ Orbitrap Velos Vildhede et al. (2015) Jacek Wisniewski Jacek R Wisniewski 2015-07-16
PXD002497 Growth condition-dependent cell surface proteome analysis of Enterococcus faecium MassIVE Enterococcus faecium E1162 LTQ Orbitrap XL Dataset with its publication pending Sinnige JC Sinnige 2015-07-16
PXD001845 Benchmarking multiple fragmentation methods on an Orbitrap Fusion for top-down phospho-proteoform characterization PRIDE Homo sapiens Orbitrap Fusion ETD Brunner et al. (2015) Andrea Mizzi Brunner Albert J.R. Heck 2015-07-16
PXD002367 The human spermatozoa proteome PRIDE Homo sapiens LTQ Orbitrap Jumeau et al. (2015) Melanie Lagarrigue Charles Pineau 2015-07-16
PXD002281 Identification of HER2 peptides for quantification in formalin-fixed paraffin-embedded breast cancer tissues PRIDE Homo sapiens LTQ Orbitrap Velos Steiner et al. (2015) Carine Steiner Ducret Axel 2015-07-16
PXD001285 Apteronotus leptorhynchus central nervous system proteome PRIDE Apteronotus leptorhynchus maXis Salisbury et al. (2015) Joseph Salisbury Jeffrey N. Agar 2015-07-16
PXD002084 CPTAC, TCGA Cancer Proteome Study of Colorectal Tissue: Proteome, VU, part 5 PRIDE Homo sapiens LTQ Orbitrap Velos Zhang et al. (2014) Nathan Edwards Daniel C. Liebler, Ph.D. 2015-07-15
PXD002534 A method to characterize antibody selectivity immunoprecipitation, part 2 PRIDE Homo sapiens LTQ Orbitrap Velos Marcon et al. (2015) Hongbo Guo Jack Greenblatt 2015-07-15
PXD002403 Chicken embryo proteome PRIDE Gallus gallus Q Exactive Uebbing et al. (2015) Jia Mi Jonas Bergquist 2015-07-15
PXD002412 A method to characterize antibody selectivity immunoprecipitation PRIDE Homo sapiens LTQ Orbitrap Velos Marcon et al. (2015) Hongbo Guo Jack Greenblatt 2015-07-15
PXD002081 CPTAC, TCGA Cancer Proteome Study of Colorectal Tissue: Proteome, VU, part 2 PRIDE Homo sapiens LTQ Orbitrap Velos Zhang et al. (2014) Nathan Edwards Daniel C. Liebler, Ph.D. 2015-07-14
PXD001804 Mucus proteome in Clca1-/- PRIDE Mus musculus Q Exactive Erickson et al. (2015) Liisa Arike Gunnar C. Hansson 2015-07-14
PXD002255 Enrichment strategy for searching missing protein PRIDE Homo sapiens LTQ Orbitrap Velos Su et al. (2015) Na Su Ping Xu 2015-07-14
PXD001904 Digital mapping of immunopeptidomes: SWATH-MS PRIDE Homo sapiens TripleTOF 5600 Caron et al. (2015) Etienne Caron Ruedi Aebersold 2015-07-14
PXD001872 Digital mapping of immunopeptidomes PRIDE Homo sapiens LTQ Orbitrap; LTQ Orbitrap Elite; TripleTOF 5600 Caron et al. (2015) Etienne Caron Ruedi Aebersold 2015-07-14
PXD001835 3D topology of the SMC2/SMC4 sub-complex from chicken condensin I revealed by cross-linking and molecular modelling PRIDE Gallus gallus LTQ Orbitrap Velos Barysz et al. (2015) Zhuo Chen Juri Rappsilber 2015-07-13
PXD001875 The prion protein contributes to epithelial-to-mesenchymal transition in the mouse NMuMG epithelial cell model PRIDE Mus musculus Orbitrap Fusion ETD Mehrabian et al. (2015) Gerold Schmitt-Ulms Gerold Schmitt-Ulms 2015-07-10
PXD001331 Insight into the proteome of axenic Crithidia fasciculata choanomastigotes PRIDE Crithidia fasciculata 4800 Proteomics Analyzer Alcolea et al. (2014) J. Alberto Medina-Aunon Vicente Larraga 2015-07-10
PXD002482 Conservation of mRNA and Protein Expression during Development of C.elegans PRIDE Caenorhabditis elegans LTQ Orbitrap Dataset with its publication pending Henrik Zauber Matthias Selbach 2015-07-09
PXD002504 Type 1 Diabetes DNA Damage Checkpoint Pathway Quantitation MassIVE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Matthew Monroe Rohit Kulkarni 2015-07-08
PXD002389 IPG Strip-Based Peptide Fractionation for Shotgun Proteomics PRIDE Homo sapiens Q Exactive Eravci, Sommer & Selbach (2014) Henrik Zauber Prof. Dr. Matthias Selbach 2015-07-08
PXD002383 Human Proteome Dataset Hek293, k652 and HeLa cell lines PRIDE Homo sapiens Q Exactive Dataset with its publication pending Henrik Zauber Prof. Dr. Matthias Selbach 2015-07-08
PXD002086 CPTAC, TCGA Cancer Proteome Study of Colorectal Tissue: Proteome, VU, part 7 PRIDE Homo sapiens LTQ Orbitrap Velos Zhang et al. (2014) Nathan Edwards Daniel C. Liebler, Ph.D. 2015-07-08
PXD000703 Proteomic Analysis of Artemisia annua PRIDE Artemisia annua (Sweet wormwood) LTQ Orbitrap Dataset with its publication pending Rainer Cramer Rainer Cramer 2015-07-08
PXD000736 Altered brain pathways following Chikungunya virus infection PRIDE Mus musculus LTQ Orbitrap Velos Fraisier et al. (2014) Lionel Almeras Pr. Christophe ROGIER 2015-07-08
PXD002202 Ubiquitin S65 proteomics: Association of ubiquitin mutants with ubiqiutin binding domains PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Swaney, Rodríguez-Mias & Villén (2015) Danielle Swaney Judit Villen 2015-07-08
PXD002205 Ubiquitin S65 proteomics: Protein turnover analysis PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Swaney, Rodríguez-Mias & Villén (2015) Danielle Swaney Judit Villen 2015-07-07
PXD002204 Ubiquitin S65 proteomics: S65E Ubiquitin full replacement protein quantitation PRIDE Saccharomyces cerevisiae (Baker's yeast) Q Exactive Swaney, Rodríguez-Mias & Villén (2015) Danielle Swaney Judit Villen 2015-07-07
PXD002203 Ubiquitin S65 proteomics: S65E Ubiquitin full replacement ubiquitylation site quantitation PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos; Q Exactive Swaney, Rodríguez-Mias & Villén (2015) Danielle Swaney Judit Villen 2015-07-07
PXD002201 Ubiquitin S65 proteomics: Targets of ubiquitin phosphorylation PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos; Q Exactive Swaney, Rodríguez-Mias & Villén (2015) Danielle Swaney Judit Villen 2015-07-07
PXD002200 Ubiquitin S65 proteomics: H2O2 ubiquitylation response PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Swaney, Rodríguez-Mias & Villén (2015) Danielle Swaney Judit Villen 2015-07-07
PXD001890 Glioma-derived stem-like cells (GSCs): Quantitative Proteomics PRIDE Homo sapiens LTQ Orbitrap Elite Dataset with its publication pending Cheryl Lichti Carol Nilsson 2015-07-07
PXD002100 iTRAQ-Based Quantitative Proteomic Analysis of the Initiation of Head Regeneration in Planarians PRIDE Dugesia japonica Q Exactive Swaney, Rodríguez-Mias & Villén (2015)Geng et al. (2015) cunshuan xu Cunshuan Xu 2015-07-07
PXD002199 Ubiquitin S65 proteomics: H2O2 Histag affinity purification protein response PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Swaney, Rodríguez-Mias & Villén (2015) Danielle Swaney Judit Villen 2015-07-07
PXD002198 Ubiquitin S65 proteomics: H2O2 phosphorylation response PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Swaney, Rodríguez-Mias & Villén (2015) Danielle Swaney Judit Villen 2015-07-07
PXD002197 Ubiquitin S65 proteomics: H2O2 whole cell lysate protein response PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Swaney, Rodríguez-Mias & Villén (2015) Danielle Swaney Judit Villen 2015-07-07
PXD002217 Variations of secretome profiles according to conditioned medium preparation: the example of human mesenchymal stem cell derived adipocytes PRIDE Homo sapiens LTQ Orbitrap Velos Clabaut et al. (2015) Thibaut Léger Odile Broux 2015-07-03
PXD001247 The cellular and proteomic response of primary and immortalized murine Kupffer cells following immune stimulation diverges from that of monocyte-derived macrophages PRIDE Homo sapiens 6520 Quadrupole Time-of-Flight LC/MS Tweedell, Tao & Dinglasan (2015) Dingyin Tao Rhoel R. Dinglasan 2015-07-03
PXD001787 Interclonal proteomic responses to predator exposure in Daphnia magna may depend on predator composition of habitats PRIDE Daphnia (common water fleas) LTQ Orbitrap Otte et al. (2015) Kathrin Otte Christian Laforsch 2015-07-03
PXD002089 CPTAC, TCGA Cancer Proteome Study of Colorectal Tissue: Proteome, VU, part 10 PRIDE Homo sapiens LTQ Orbitrap Velos Zhang et al. (2014) Nathan Edwards Daniel C. Liebler, Ph.D. 2015-07-03
PXD002088 CPTAC, TCGA Cancer Proteome Study of Colorectal Tissue: Proteome, VU, part 9 PRIDE Homo sapiens LTQ Orbitrap Velos Zhang et al. (2014) Nathan Edwards Daniel C. Liebler, Ph.D. 2015-07-03
PXD002087 CPTAC, TCGA Cancer Proteome Study of Colorectal Tissue: Proteome, VU, part 8 PRIDE Homo sapiens LTQ Orbitrap Velos Zhang et al. (2014) Nathan Edwards Daniel C. Liebler, Ph.D. 2015-07-03
PXD002085 CPTAC, TCGA Cancer Proteome Study of Colorectal Tissue: Proteome, VU, part 6 PRIDE Homo sapiens LTQ Orbitrap Velos Zhang et al. (2014) Nathan Edwards Daniel C. Liebler, Ph.D. 2015-07-02
PXD002082 CPTAC, TCGA Cancer Proteome Study of Colorectal Tissue: Proteome, VU, part 3 PRIDE Homo sapiens LTQ Orbitrap Velos Zhang et al. (2014) Nathan Edwards Daniel C. Liebler, Ph.D. 2015-07-02
PXD002080 CPTAC, TCGA Cancer Proteome Study of Colorectal Tissue: Proteome, VU, part 1 PRIDE Homo sapiens LTQ Orbitrap Velos Zhang et al. (2014) Nathan Edwards Daniel C. Liebler, Ph.D. 2015-07-02
PXD001655 Metaproteomic analysis using the Galaxy framework PRIDE Homo sapiens LTQ Orbitrap Velos Jagtap et al. (2015) Pratik Jagtap Timothy J. Griffin 2015-07-02
PXD001615 Bacillus subtilis acetylome and succinylome PRIDE Bacillus subtilis subsp. subtilis str. 168 Q Exactive Kosono et al. (2015) Saori Kosono Saori Kosono 2015-07-02
PXD002464 HILIC-mode HAMMOC MassIVE Homo sapiens TripleTOF 5600 Dataset with its publication pending Masaki Wakabayashi Yasushi Ishihama 2015-07-01
PXD002447 Hydrophilic Interaction Chromatography Using a Meter-Scale Monolithic Silica Capillary Column MassIVE Homo sapiens TripleTOF 5600 Dataset with its publication pending tabata Kanta Horie, Yasushi Ishihama 2015-06-30
PXD002327 Panorama of ancient metazoan macromolecular complexes: Saccharomyces cerevisiae PRIDE Saccharomyces cerevisiae (Baker's yeast), Saccharomyces cerevisiae W303 LTQ XL; LTQ Orbitrap Velos Wan et al. (2015) Blake borgeson Andrew Emili 2015-06-29
PXD001426 EBprot: Bayesian Analysis of Labelling-based Quantitative Proteomics Data PRIDE Homo sapiens Q Exactive Koh et al. (2015) Rachel Li Hyung Won Choi 2015-06-29
PXD001694 Mass spectrometry based detergent-insoluble proteins of human cell lysates PRIDE Homo sapiens TripleTOF 5600 Chen et al. (2015) LI Yaxing Tong Wang 2015-06-29
PXD001668 Proteomic analyses reveal that loss of TDP-43 affects RNA processing and intracellular transport PRIDE Homo sapiens LTQ Orbitrap Štalekar et al. (2015) Xiaoke Yin Manuel Mayr 2015-06-29
PXD001947 Identification and characterization of the first Nα-acetyltransferase in plastids PRIDE Escherichia coli LTQ Orbitrap Dinh et al. (2015) Willy Bienvenut Willy V Bienvenut 2015-06-29
PXD002212 Quantification of cytokines secreted by primary human cells using MRM: evaluation of analytical parameters – shotgun secretome data of untreated HUVECs PRIDE Homo sapiens Q Exactive Muqaku et al. (2015) Christopher Gerner Christopher Gerner 2015-06-29
PXD002211 Quantification of cytokines secreted by primary human cells using MRM: evaluation of analytical parameters – shotgun secretome data of inflammatory stimulated HUVECs PRIDE Homo sapiens Q Exactive Muqaku et al. (2015) Christopher Gerner Christopher Gerner 2015-06-29
PXD002190 C. elegans SGK-1 IP-MS PRIDE Caenorhabditis elegans LTQ Orbitrap Zhu et al. (2015) Ming Zhu Meng-Qiu Dong 2015-06-29
PXD002222 Rice-xoo interaction phosphoproteome LC-MSMS PRIDE Rice(O. sativa) Q Exactive Hou et al. (2015) Jian Zhang Jian Zhang 2015-06-29
PXD000619 Quantitative proteomic analysis of gallbladder cancer PRIDE Homo sapiens LTQ Orbitrap Velos Sahasrabuddhe et al. (2014) Akhilesh Pandey 2015-06-26
PXD002228 Mammalian Bcnt/Cfdp1, a potential epigenetic factor characterized by an acidic stretch in the disordered N-terminal and S250 phosphorylation in the conserved C-terminal regions PRIDE Homo sapiens Q Exactive Dataset with its publication pending Takehiro Suzuki Takehiro Suzuki 2015-06-25
PXD001559 Global phosphoproteomic mapping of early mitotic exit in human cells identifies novel substrate dephosphorylation motifs PRIDE Homo sapiens LTQ Orbitrap Velos McCloy et al. (2015) Andrew Burgess Andrew Burgess 2015-06-25
PXD002065 TK SILACepedia PRIDE Homo sapiens LTQ Orbitrap Velos Stebbing et al. (2015) Georgios Giamas Georgios Giamas 2015-06-23
PXD001078 Middle infrared radiation on human metastatic breast cancer MDA-MB-231 cells PRIDE Homo sapiens LTQ Orbitrap Chang et al. (2015) Hsin-Yi Chang Hsueh-Fen Juan 2015-06-23
PXD001909 Proteomic Identification of Nuclear Processes Manipulated by Cytomegalovirus Early during Infection PRIDE Homo sapiens , Human cytomegalovirus (HHV-5) (Human herpesvirus 5) LTQ Orbitrap Velos Carter et al. (2015) Dominique Carter Scott Terhune 2015-06-23
PXD002192 Proteomic identification of cysteine cathepsin substrates shed from the surface of cancer cells PRIDE Homo sapiens LTQ Orbitrap Velos Sobotic et al. (2015) Marko Fonovic Marko Fonovic 2015-06-23
PXD002326 Panorama of ancient metazoan macromolecular complexes: Xenopus laevis PRIDE Xenopus laevis (African clawed frog) LTQ XL; LTQ Orbitrap Velos Wan et al. (2015) Blake borgeson Andrew Emili 2015-06-22
PXD001338 Comprehensive temporal protein dynamics during the diauxic shift in Saccharomyces cerevisiae, part 5 PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Elite Murphy et al. (2015) Patrick Murphy Steven Gygi 2015-06-22
PXD001439 Mariprofundus ferrooxydans proteomic profile - membrane PRIDE Mariprofundus ferrooxydans LTQ Orbitrap Barco et al. (2015) Roman Barco Katrina J. Edwards 2015-06-22
PXD001050 Mariprofundus ferrooxydans proteomic profile PRIDE Mariprofundus ferrooxydans LTQ Orbitrap Barco et al. (2015) Roman Barco Katrina J. Edwards 2015-06-22
PXD002156 Integrating Proteomics and Enzyme Kinetics Reveals Tissue-Specific Types of the Glycolytic and Gluconeogenic Pathways PRIDE Mus musculus Q Exactive Wiśniewski, Gizak & Rakus (2015) Jacek Wisniewski Jacek R Wisniewski 2015-06-22
PXD001335 Comprehensive temporal protein dynamics during the diauxic shift in Saccharomyces cerevisiae PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Elite Murphy et al. (2015) Patrick Murphy Steve Gygi 2015-06-19
PXD002093 Comprehensive temporal protein dynamics during the diauxic shift in Saccharomyces cerevisiae, part 3 PRIDE Saccharomyces cerevisiae (Baker's yeast) Orbitrap Fusion Murphy et al. (2015) Patrick Murphy Steve Gygi 2015-06-19
PXD002092 Comprehensive temporal protein dynamics during the diauxic shift in Saccharomyces cerevisiae, part 2 PRIDE Saccharomyces cerevisiae (Baker's yeast) Orbitrap Fusion Murphy et al. (2015) Patrick Murphy Steve Gygi 2015-06-19
PXD001334 Comprehensive temporal protein dynamics during the diauxic shift in Saccharomyces cerevisiae, part 1 PRIDE Saccharomyces cerevisiae (Baker's yeast) Orbitrap Fusion Murphy et al. (2015) Patrick Murphy Steve Gygi 2015-06-19
PXD002325 Panorama of ancient metazoan macromolecular complexes: Sea urchin PRIDE Strongylocentrotus purpuratus (Purple sea urchin) LTQ XL; LTQ Orbitrap Velos 0 Blake borgeson Andrew Emili 2015-06-19
PXD002324 Panorama of ancient metazoan macromolecular complexes: Nematostella vectensis PRIDE Nematostella vectensis LTQ XL; LTQ Orbitrap Velos Wan et al. (2015) Blake borgeson Andrew Emili 2015-06-18
PXD002323 Panorama of ancient metazoan macromolecular complexes: Mus musculus PRIDE Mus musculus LTQ XL; LTQ Orbitrap Velos Wan et al. (2015) Blake borgeson Andrew Emili 2015-06-17
PXD002278 Bacteriophage vB_EcoP_SU10, LC-MS/MS PRIDE Phage vB_EcoP_SU10 LTQ Orbitrap Velos Mirzaei et al. (2014) Kie Kasuga Anders S Nilsson 2015-06-17
PXD002321 Panorama of ancient metazoan macromolecular complexes: Drosophila melanogaster PRIDE Drosophila melanogaster (Fruit fly) LTQ XL; LTQ Orbitrap Velos 0 Blake borgeson Andrew Emili 2015-06-17
PXD002385 Human Calu-3 cell proteome response to a wild type infectious clone of H7N9 and mutant H7N9 viruses MassIVE Homo sapiens, Human Calu-3 cells LTQ Orbitrap Velos Dataset with its publication pending Matthew Monroe Yoshihiro Kawaoka, Katrina Waters, Richard Smith and Thomas Metz 2015-06-17
PXD002320 Panorama of ancient metazoan macromolecular complexes: Dictyostelium discoideum PRIDE Dictyostelium discoideum (Slime mold), Dictyostelium discoideum AX4 LTQ XL; LTQ Orbitrap Velos 0 Blake borgeson Andrew Emili 2015-06-17
PXD001723 Global proteomics analysis reveals a role for histone variant H3.3 in the response to starvation PRIDE Caenorhabditis elegans Q Exactive Larance et al. (2015) Vackar Afzal Angus Lamond 2015-06-17
PXD002377 The response of Chlamydomonas reinhardtii to nitrogen deprivation: a systems biology analysis PRIDE Chlamydomonas reinhardtii LTQ Orbitrap Velos Park et al. (2015) Evan McConnell Leslie M. Hicks 2015-06-17
PXD002006 Changes in proteome upon mTOR activation PRIDE Mus musculus LTQ Orbitrap Velos Chang et al. (2015) Ebbing de Jong Jeongsik Yong 2015-06-16
PXD001685 A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery PRIDE Homo sapiens LTQ FT Sjöström et al. (2015) Reto Ossola Emma Nimeus-Malmstroem 2015-06-16
PXD002045 CPTAC proteomic analysis of TCGA colon and rectal carcinomas using standard and customized databases, part 5 PRIDE Homo sapiens LTQ Orbitrap Velos Slebos et al. (2015) Robbert Slebos Daniel C. Liebler, Ph.D. 2015-06-16
PXD002043 CPTAC proteomic analysis of TCGA colon and rectal carcinomas using standard and customized databases, part 3 PRIDE Homo sapiens LTQ Orbitrap Velos Slebos et al. (2015) Robbert Slebos Daniel C. Liebler, Ph.D. 2015-06-16
PXD002042 CPTAC proteomic analysis of TCGA colon and rectal carcinomas using standard and customized databases, part 2 PRIDE Homo sapiens LTQ Orbitrap Velos Slebos et al. (2015) Robbert Slebos Daniel C. Liebler, Ph.D. 2015-06-16
PXD002319 Panorama of ancient metazoan macromolecular complexes: Caenorhabditis elegans PRIDE Caenorhabditis elegans LTQ XL; LTQ Orbitrap Velos 0 Blake borgeson Andrew Emili 2015-06-15
PXD001798 System-Wide Identification of Wild-Type SUMO-2 Conjugation Sites PRIDE Homo sapiens Q Exactive Hendriks et al. (2015) Ivo Hendriks Alfred C.O. Vertegaal 2015-06-15
PXD002041 CPTAC proteomic analysis of TCGA colon and rectal carcinomas using standard and customized databases, part 1 PRIDE Homo sapiens LTQ Orbitrap Velos Slebos et al. (2015) Robbert Slebos Daniel C. Liebler, Ph.D. 2015-06-15
PXD002180 Architecture of a host-parasite interface: complex targeting mechanisms revealed through proteomics PRIDE Trypanosoma brucei LTQ Orbitrap Velos Gadelha et al. (2015) Catarina Gadelha Catarina Gadelha 2015-06-15
PXD001901 Dynamic proteomic profiling of extra-embryonic endoderm differentiation in mouse embryonic stem cells PRIDE Mus musculus LTQ Orbitrap Velos Mulvey et al. (2015) Laurent Gatto Kathryn Lilley 2015-06-13
PXD002050 CPTAC proteomic analysis of TCGA colon and rectal carcinomas using standard and customized databases, part 10 PRIDE Homo sapiens LTQ Orbitrap Velos Slebos et al. (2015) Robbert Slebos Daniel C. Liebler, Ph.D. 2015-06-13
PXD002049 CPTAC proteomic analysis of TCGA colon and rectal carcinomas using standard and customized databases, part 9 PRIDE Homo sapiens LTQ Orbitrap Velos Slebos et al. (2015) Robbert Slebos Daniel C. Liebler, Ph.D. 2015-06-12
PXD002048 CPTAC proteomic analysis of TCGA colon and rectal carcinomas using standard and customized databases, part 8 PRIDE Homo sapiens LTQ Orbitrap Velos Slebos et al. (2015) Robbert Slebos Daniel C. Liebler, Ph.D. 2015-06-12
PXD002362 Calu-3 metabolome response to an infectious clone of H7N9 Influenza virus and mutant H7N9 viruses MassIVE Homo sapiens, Human Calu-3 cell instrument model: GC-MS Dataset with its publication pending Matthew Monroe Yoshihiro Kawaoka, Katrina Waters, Richard Smith and Thomas Metz 2015-06-12
PXD002360 Calu-3 lipidome response to an infectious clone of Middle Eastern Respiratory Syndrome coronavirus MassIVE Homo sapiens, Human Calu-3 cell LTQ Orbitrap Velos Dataset with its publication pending Matthew Monroe Yoshihiro Kawaoka, Ralph Baric, Katrina Waters, Richard Smith and Thomas Metz 2015-06-12
PXD002359 Calu-3 metabolome response to an infectious clone of Middle Eastern Respiratory Syndrome coronavirus MassIVE Homo sapiens, Human Calu-3 cell instrument model: GC-MS Dataset with its publication pending Matthew Monroe Yoshihiro Kawaoka, Ralph Baric, Katrina Waters, Richard Smith and Thomas Metz 2015-06-12
PXD002358 Calu-3 proteome response to an infectious clone of Middle Eastern Respiratory Syndrome coronavirus MassIVE Homo sapiens, Human Calu-3 cells LTQ Orbitrap Velos Dataset with its publication pending Matthew Monroe Yoshihiro Kawaoka, Ralph Baric, Katrina Waters, Richard Smith and Thomas Metz 2015-06-12
PXD002047 CPTAC proteomic analysis of TCGA colon and rectal carcinomas using standard and customized databases, part 7 PRIDE Homo sapiens LTQ Orbitrap Velos Slebos et al. (2015) Robbert Slebos Daniel C. Liebler, Ph.D. 2015-06-12
PXD002046 CPTAC proteomic analysis of TCGA colon and rectal carcinomas using standard and customized databases, part 6 PRIDE Homo sapiens LTQ Orbitrap Velos Slebos et al. (2015) Robbert Slebos Daniel C. Liebler, Ph.D. 2015-06-12
PXD002044 CPTAC proteomic analysis of TCGA colon and rectal carcinomas using standard and customized databases, part 4 PRIDE Homo sapiens LTQ Orbitrap Velos Slebos et al. (2015) Robbert Slebos Daniel C. Liebler, Ph.D. 2015-06-11
PXD002357 Mouse dendritic cell lipidome response to wild-type West Nile virus (WNV-NY) MassIVE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Matthew Monroe Yoshihiro Kawaoka, Michael Diamond, Katrina Waters, Richard Smith and Thomas Metz 2015-06-11
PXD002356 Mouse dendritic cell metabolome response to wild-type West Nile virus (WNV-NY) MassIVE Mus musculus instrument model: GC-MS Dataset with its publication pending Matthew Monroe Yoshihiro Kawaoka, Michael Diamond, Katrina Waters, Richard Smith and Thomas Metz 2015-06-11
PXD002355 Mouse dendritic cell proteome response to wild-type West Nile virus (WNV-NY) MassIVE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Matthew Monroe Yoshihiro Kawaoka, Michael Diamond, Katrina Waters, Richard Smith and Thomas Metz 2015-06-11
PXD002209 iTRAQ-Facilitated Proteomic Profiling of Cotton Anthers PRIDE Gossypium hirsutum (Upland cotton) (Gossypium mexicanum) LTQ Orbitrap Liu et al. (2015) Ji Liu Chaoyou Pang 2015-06-11
PXD002002 Giardia duodenalis Encystation Strain Variation PRIDE Giardia intestinalis assemblage A LTQ Velos Emery et al. (2015) Samantha Emery Paul A Haynes 2015-06-10
PXD001564 Comparative proteomics of the ewe cerebrospinal fluid under long or short photoperiod PRIDE Ovis aries LTQ Orbitrap Velos Teixeira-Gomes et al. (2015) G HARICHAUX Laurence Dufourny 2015-06-09
PXD001450 Characterization and quantification of chicken eggshell proteins during pivotal events of shell calcification PRIDE Gallus gallus LTQ Orbitrap Velos Marie et al. (2015) G HARICHAUX Joel GAUTRON 2015-06-09
PXD002113 C. trachomatis L2 inclusion proteome PRIDE Homo sapiens LTQ Orbitrap Aeberhard et al. (2015) Lukas Aeberhard Dagmar Heuer 2015-06-08
PXD002142 Quantitative cross-linking/mass spectrometry PRIDE Homo sapiens LTQ Orbitrap Velos Fischer, Chen & Rappsilber (2013) Sven Giese Juri Rappsilber 2015-06-08
PXD002067 Wheat Allergens MALDI-TOF/TOF PRIDE Triticum aestivum ultraflex Dataset with its publication pending Maksym Danchenko Martin Hajduch 2015-06-08
PXD002000 Mechanisms of antibiotic resistance to enrofloxacin in uropathogenic Escherichia coli in dog PRIDE Escherichia coli ultraflex; nanoACQUITY UPLC Piras et al. (2015) Paola Roncada Paola Roncada 2015-06-05
PXD001468 An Ultra-tolerant Database Search Identifies more than 100,000 Modified Peptides PRIDE Homo sapiens Q Exactive Chick et al. (2015) Joel Chick Steven P Gygi 2015-06-03
PXD001440 Systems-wide analysis of BCR signalosomes and downstream phosphorylation and ubiquitylation PRIDE Mus musculus Q Exactive Satpathy et al. (2015) Shankha Satpathy Chunaram Choudhary 2015-06-02
PXD001521 Human “free-N-terminome” analysis PRIDE Homo sapiens amaZon ETD; maXis 4G Jacome et al. (2015) Sebastian VACA Alain Van Dorsselaer 2015-06-02
PXD001171 Human Serum LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Velos Tsai et al. (2015) Habtom Ressom Habtom W. Ressom 2015-06-02
PXD001935 Proteomic Study of Different Culture Medium Serum Volume Fractions on RANKL-dependent Differentiating into Osteoclasts of RAW264.7 Cells PRIDE Mus musculus Q Exactive Xiong et al. (2015) Wei Ge Wei Ge 2015-06-02
PXD001523 Human “free-N-terminome” analysis PRIDE Homo sapiens maXis 4G Jacome et al. (2015) Sebastian VACA Alain Van Dorsselaer 2015-06-02
PXD001522 Human “free-N-terminome” analysis PRIDE Homo sapiens maXis 4G Jacome et al. (2015) Sebastian VACA Alain Van Dorsselaer 2015-06-02
PXD002287 Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae. PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos; Q Exactive Henriksen et al. (2012) Brian Weinert Chunaram Choudhary 2015-06-02
PXD002277 Lysine succinylation is a frequently occurring modification in prokaryotes and eukaryotes and extensively overlaps with acetylation PRIDE Escherichia coli, Homo sapiens , Mus musculus , Saccharomyces cerevisiae (Baker's yeast) Q Exactive Weinert et al. (2013) Brian Weinert Brian Weinert, Chunaram Choudhary 2015-06-02
PXD001158 Profiling the proteome of Mycobacterium tuberculosis during dormancy and reactivation PRIDE Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) Synapt MS Gopinath et al. (2015) Ajay Kumar R. Ajay Kumar 2015-06-01
PXD001437 N-terminal acetylome analyses reveals the substrate specificity profile of Naa50 (Nat5) and implicate NATs in influencing initiator Methionine processing PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Van Damme et al. (2015) Petra Van Damme Petra Van Damme 2015-05-29
PXD001428 Multiple protease based human phosphopeptide atlas PRIDE Homo sapiens Orbitrap Fusion; LTQ Orbitrap Elite Giansanti et al. (2015) Piero Giansanti Albert J. R. Heck, 2015-05-29
PXD000397 MDA-MB-231 Breast Cancer Bone Tropic vs Parental Hypoxic Secretome Analysis PRIDE Homo sapiens Q Exactive Cox et al. (2015) Thomas Cox Janine T Erler 2015-05-28
PXD001432 Tcell surface analysis PRIDE Homo sapiens LTQ Orbitrap XL Graessel et al. (2015) Kathrin Suttner Kathrin Suttner 2015-05-27
PXD000977 Shotgun proteomics study on Cabernet sauvignon cells exposed to hot and cold temperature stresses PRIDE Vitis vinifera LTQ Velos George et al. (2015) Iniga George Paul Haynes 2015-05-27
PXD001399 Protein Quantification and Identification from River Bank Grape, Vitis riparia: Comparing SDS-PAGE and FASP-GPF techniques for shotgun proteomic analysis. PRIDE Vitis labrusca x Vitis riparia, Vitis vinifera LTQ Orbitrap Velos George, Fennell & Haynes (2015) Iniga George Paul A Haynes 2015-05-27
PXD001608 Human colon biopsies (healthy and Ulcerative Colitis) LC-MS/MS PRIDE Homo sapiens Q Exactive Bennike et al. (2015) Tue Bennike Allan Stensballe 2015-05-26
PXD001907 SuperQuant: a Data Processing Approach to Increase Quantitative Proteome Coverage PRIDE Homo sapiens Orbitrap Fusion Gorshkov, Verano-Braga & Kjeldsen (2015) Vladimir Gorshkov Frank Kjeldsen 2015-05-26
PXD000754 Human Placenta profilling LTQ-OrbiTrap PRIDE Homo sapiens LTQ Orbitrap Lee et al. (2013)Jeong et al. (2013) SK Jeong Young-Ki Paik 2015-05-26
PXD001276 Modulation of cell metabolic pathways and oxidative stress signaling contribute to acquired melphalan resistance in multiple myeloma cells PRIDE Homo sapiens LTQ Orbitrap Zub et al. (2015) Animesh Sharma Geir Slupphaug 2015-05-26
PXD001271 HT-29 treated with mature fragilysin LC-MSMS PRIDE Homo sapiens TripleTOF 5600 Kharlampieva et al. (2015) Ilya Altukhov Vasiliy Lazarev 2015-05-26
PXD002104 ER/PR RIME Experiments in MCF7 and T47D cell lines PRIDE Homo sapiens LTQ Orbitrap Velos Mohammed et al. (2015) Hisham Mohammed Dr Jason Carroll 2015-05-26
PXD001567 Proteomics Analysis of Soybean Hypocotyl during Recovery after Flooding Stress PRIDE Glycine max (Glycine hispida) LTQ XL Khan, Sakata & Komatsu (2015) Mudassar Khan Setsuko Komatsu 2015-05-26
PXD001592 The impact II, a very high resolution quadrupole time-of-flight instrument for deep shotgun proteomics PRIDE Homo sapiens , Mus musculus , Saccharomyces cerevisiae (Baker's yeast) Bruker Daltonics instrument model Beck et al. (2015) Mario Oroshi Matthias Mann 2015-05-26
PXD002008 MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions MassIVE Mus musculus TripleTOF 5600 Dataset with its publication pending Birgit Schilling Bradford W. Gibson 2015-05-24
PXD001743 AP-MS MudPIT run of Swr1 complex MassIVE Saccharomyces cerevisiae LTQ Orbitrap Elite Watanabe et al. (2015) Mahadevan Lakshminarasimhan Michael P. Washburn, Craig L. Peterson, Thomas Walz 2015-05-22
PXD001742 AP-MS MudPIT run of Ino80 complex MassIVE Saccharomyces cerevisiae LTQ Orbitrap Elite Watanabe et al. (2015) Mahadevan Lakshminarasimhan Michael P. Washburn, Craig L. Peterson, Thomas Walz 2015-05-22
PXD002210 iTRAQ of NTHi phasevarions PRIDE Haemophilus influenzae TripleTOF 5600 Dataset with its publication pending John Atack Michael Jennings 2015-05-20
PXD001825 Aquired resistance mechanisms to EGFR-specific kinase inhibitors using chemical proteomics PRIDE Homo sapiens LTQ Orbitrap Koch et al. (2015) Heiner Koch Prof. Bernhard Kuster 2015-05-20
PXD000996 Proteomics analysis of cystic fluid from human cystic papillary thyroid carcinoma PRIDE Homo sapiens LTQ Orbitrap Dinets et al. (2015) Maria Pernemalm Janne Lehtiö 2015-05-20
PXD001449 Validation of alternatively spliced protein isoforms in human mesenchymal stem cells PRIDE Homo sapiens LTQ Orbitrap Velos Tay et al. (2015) A Tay Marc Wilkins 2015-05-20
PXD001972 Multi-organ proteomics of rhesus macaque for prototype proteome bank of non–human primate PRIDE Macaca mulatta (Rhesus macaque) LTQ Lee et al. (2015) Sunil Hwang Sunil Hwang 2015-05-19
PXD001353 Truncated Tau PRIDE Homo sapiens LTQ FT Derisbourg et al. (2015) Yann Verdier Joelle VINH 2015-05-15
PXD001239 Yeast exosome: immunoprecipitation 2 PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Frenk, Oxley & Houseley (2014) David Oxley David Oxley 2015-05-15
PXD001223 Yeast exosome: immunoprecipitation 1 PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Frenk, Oxley & Houseley (2014) David Oxley David Oxley 2015-05-15
PXD001946 Surface Proteome Analysis of Procyclic and Bloodstream forms of Trypanosoma brucei MassIVE Trypanosoma brucei LTQ Orbitrap XL; Q Exactive Dataset with its publication pending James Wohlschlegel James Wohlschlegel 2015-05-14
PXD000941 Differences in proteasome targeting in Arabidopsis leaf mesophyll, epidermal and vascular cells PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap XL Svozil, Gruissem & Baerenfaller (2015) Katja Baerenfaller Katja Baerenfaller 2015-05-14
PXD000942 Differences in proteasome targeting in Arabidopsis leaf mesophyll, epidermal and vascular cells PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap XL Svozil, Gruissem & Baerenfaller (2015) Katja Baerenfaller Katja Baerenfaller 2015-05-13
PXD002161 Effects of daf-2 mutation, dietary restriction and age on C.elegans proteome PRIDE Caenorhabditis elegans LTQ Orbitrap Depuydt et al. (2013)Depuydt et al. (2014) Vlad Petyuk Vladislav Petyuk 2015-05-13
PXD001389 Phosphoproteome Analysis of Magnaporthe oryzae During Appressorium Development PRIDE Magnaporthe oryzae (Rice blast fungus) (Pyricularia oryzae) LTQ Orbitrap Franck et al. (2015) Ralph Dean Dr. Ralph Dean 2015-05-13
PXD001039 Phosphoproteomics of the Milk Fat Globule Membrane: new insights into lipid droplet secretion from the mammary epithelial cell PRIDE Capra hircus Q Exactive Henry et al. (2015) HENRY CELINE Christelle CEBO 2015-05-12
PXD001993 Male accessory glands of Apis melifera drones PRIDE Apis mellifera LTQ FT Gorshkov et al. (2015) Vladimir Gorshkov Prof. Bernhard Spengler 2015-05-11
PXD000325 QuiXoT+ project: General Statistical framework for quantitative proteomics by stable isotope labeling PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap; LTQ Navarro et al. (2014) Marco Trevisan-Herraz Jesús Vázquez 2015-05-11
PXD001852 Protein gel band method for improving the identification of stem proteins PRIDE Arabidopsis thaliana (Mouse-ear cress) LCQ Classic Dataset with its publication pending Shihui Yang Hui Wei 2015-05-11
PXD001851 Protein solution method for direct identification of Arabidopsis stem proteins PRIDE Arabidopsis thaliana (Mouse-ear cress) LCQ Classic Dataset with its publication pending Shihui Yang Hui Wei 2015-05-11
PXD001532 Quantitative Analysis of the erythrocyte membrane proteins in polycythemia vera patients treated with hydroxycarbamide PRIDE Homo sapiens QSTAR; Q Exactive Dataset with its publication pending Susumu Imanishi Garry L. Corthals 2015-05-11
PXD001643 SILAC-iTRAQ-TAILS PRIDE Mus musculus Q Exactive Schlage et al. (2015) Ulrich auf dem Keller Ulrich auf dem Keller 2015-05-11
PXD001364 Widespread Proteome Remodeling and Aggregation in Aging C. elegans PRIDE Caenorhabditis elegans LTQ Orbitrap; LTQ Orbitrap Velos; LTQ Orbitrap Elite Walther et al. (2015) Mario Oroshi Matthias Mann 2015-05-11
PXD001722 Trypsin-digested whole cell lysates from Mycobacterium tuberculosis MassIVE Mycobacterium tuberculosis H37Rv instrument model: Orbitrap Velos mass spectrometer Dataset with its publication pending Michael Chase Sarah Fortune 2015-05-08
PXD002148 An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum PRIDE Phaeodactylum tricornutum (strain CCAP 1055/1) LTQ Orbitrap Veluchamy et al. (2015) Guillaume Arras Damarys Loew 2015-05-08
PXD001672 SPPL3 cleavage of glycosyltransferases regulates their activity PRIDE Homo sapiens LTQ Orbitrap Kuhn et al. (2015) Peer-Hendrik Kuhn Prof. Dr. Stefan Lichtenthaler 2015-05-08
PXD000793 PIA - iPRG2008 Benchmark Dataset PRIDE Mus musculus Q TRAP Uszkoreit et al. (2015) Julian Uszkoreit Katrin Marcus 2015-05-08
PXD000790 PIA - Mouse Benchmark Dataset PRIDE Mus musculus LTQ Orbitrap Elite Uszkoreit et al. (2015) Julian Uszkoreit Katrin Marcus 2015-05-08
PXD000792 PIA - Yeast Gold Standard Benchmark Dataset PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Uszkoreit et al. (2015) Julian Uszkoreit Katrin Marcus 2015-05-08
PXD001274 Comparison of ribosomes between control and dyskerin-depleted human cells PRIDE Homo sapiens LTQ Orbitrap Velos Penzo et al. (2015) Yohann Couté Christophe Bruley 2015-05-07
PXD000491 Proteomics reveals dynamic assembly of repair complexes during bypass of DNA cross-links part 2 of 2: AP-MS DATA (QUBIC) PRIDE Homo sapiens LTQ Orbitrap Räschle et al. (2015) Mario Oroshi Matthias Mann 2015-05-07
PXD000490 Proteomics reveals dynamic assembly of repair complexes during bypass of DNA cross-links, part 1 of 2: CHROMASS DATA PRIDE Xenopus laevis (African clawed frog) LTQ Orbitrap; Q Exactive; LTQ Orbitrap Velos Räschle et al. (2015) Mario Oroshi Matthias Mann 2015-05-07
PXD001695 A double-barrel LC-MS/MS system to quantify 96 interactomes per day PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap; Q Exactive Hosp et al. (2015) Mario Oroshi Matthias Mann 2015-05-07
PXD001606 California sea lion plasma chronic DAT biomarkers via 2D-GE PRIDE Zalophus californianus (California sealion) TripleTOF 5600 Neely et al. (2014) Benjamin Neely Michael Gregory Janech 2015-05-07
PXD002117 The quantitative proteome of a human cell line PRIDE Homo sapiens LTQ Orbitrap; LTQ FT; LTQ Orbitrap Velos Beck et al. (2011) Alexander Schmidt Alexander Schmidt 2015-05-07
PXD000774 Mitral Valve Tissue Shotgun Proteomics PRIDE Homo sapiens TripleTOF 5600 Tan et al. (2015) Hwee Tong Tan Hwee Tong Tan 2015-05-07
PXD001478 Proteome analysis of NGF stimulated PC12 cells PRIDE Rattus norvegicus Q Exactive Emdal et al. (2015) Kristina Bennet Emdal Jesper Velgaard Olsen 2015-05-06
PXD001115 Proteomics of NGF-TrkA signaling dynamics in neuroblastoma cells PRIDE Homo sapiens Q Exactive Emdal et al. (2015) Kristina Bennet Emdal Jesper V. Olsen 2015-05-06
PXD000691 Human Breast Cell Index PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending Paolo Cifani Peter James 2015-05-06
PXD001443 Proteomics analysis of dorsal striatum reveals changes in synaptosomal proteins following ethamphetamine self-administration in rats PRIDE Oryctolagus cuniculus LTQ Orbitrap Dataset with its publication pending Danyl Mclauchlan Lifeng Peng 2015-05-06
PXD001924 s54-dependent response to nitrogen limitation and virulence in Burkholderia cenocepacia H111 PRIDE Burkholderia cenocepacia H111 LTQ Orbitrap Velos Lardi et al. (2015) Ulrich Omasits Gabriella Pessi 2015-05-05
PXD001221 Targeting of non-phosphorylated lysosomal enzymes involves secretion and Lrp1-mediated recapture PRIDE Mus musculus LTQ Orbitrap Velos Markmann et al. (2015) Melanie Thelen Prof. Dr. Volkmar Gieselmann 2015-05-01
PXD001623 Bumblebee venom PRIDE Bombus terrestris (Buff-tailed bumblebee) (Apis terrestris) LTQ FT Sadd et al. (2015) Bart Devreese Bart Devreese 2015-04-29
PXD002114 ABRF PRG 2012: Longitudinal QC in Routine Peptide LC-MS/MS Analyses MassIVE Bos taurus instrument model: Various Dataset with its publication pending David L. Tabb Maureen Bunger 2015-04-28
PXD001245 Functional proteomics identifies acinus L as a direct insulin- and amino acid-dependent mTORC1 substrate PRIDE Homo sapiens LTQ Orbitrap; LTQ FT Schwarz et al. (2015) Friedel Drepper Prof. Dr. Kathrin Thedieck 2015-04-28
PXD001244 Functional proteomics identifies acinus L as a direct insulin- and amino acid-dependent mTORC1 substrate PRIDE Homo sapiens LTQ Orbitrap Schwarz et al. (2015) Friedel Drepper Prof. Dr. Kathrin Thedieck 2015-04-28
PXD001196 Functional proteomics identifies acinus L as a direct insulin- and amino acid-dependent mTORC1 substrate PRIDE Homo sapiens LTQ FT Schwarz et al. (2015) Friedel Drepper Prof. Dr. Kathrin Thedieck 2015-04-28
PXD001824 Improved protease digestion conditions for membrane protein detection PRIDE Escherichia coli Q TRAP Min, Choe & Lee (2015) Lie Min Kelvin H. Lee 2015-04-28
PXD002110 SIRT1 deacetylates RORgt and enhances Th17 cell generation MassIVE Mus musculus instrument model: TripleTOF 6600 (AB SCIEX) 0 Birgit Schilling Eric Verdin, Bradford W. Gibson 2015-04-27
PXD002109 SIRT5 Regulates Lysine Malonylation MassIVE Mus musculus TripleTOF 5600 Dataset with its publication pending Matt Rardin Bradford W. Gibson 2015-04-27
PXD000006 Identification of 15d-PGJ2 target proteins PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Marcone & Fitzgerald (2013) Simone Marcone 2015-04-27
PXD000621 Platelet Activation Results in Modulation of miRNA, mRNA, and Protein Expression Profiles: New Insights into the Pathophysiology of Platelet Activation PRIDE Homo sapiens QSTAR Cimmino et al. (2015) Tuula Nyman Tuula Nyman 2015-04-27
PXD000951 29RNP kinase idetification PRIDE Rice(O. sativa) LTQ FT Lu et al. (2015) Qingtao Lu Lu Qingtao 2015-04-27
PXD000857 29RNP phosphorylation site PRIDE Rice(O. sativa) LTQ Orbitrap Lu et al. (2015) Qingtao Lu Lu Qingtao 2015-04-27
PXD001168 29RNP kinase PRIDE Rice(O. sativa) LTQ Orbitrap Lu et al. (2015) Qingtao Lu Lu Qingtao 2015-04-27
PXD002098 Super-SILAC Allows Classification of Diffuse Large B-cell Lymphoma Subtypes by Their Protein Expression Profiles PRIDE Homo sapiens LTQ Orbitrap Velos; Q Exactive Deeb et al. (2012) Mario Oroshi Matthias Mann 2015-04-24
PXD000029 Combined proteomics and transcriptomics identifies carboxypeptidase B1 and NF-κB associated proteins as putative biomarkers of metastasis in low grade breast cancer PRIDE Homo sapiens LTQ Orbitrap Velos Bouchal et al. (2015) Pavel Bouchal Pavel Bouchal 2015-04-23
PXD001864 S. cerevisiae subjected to prolonged heat stress of 37 ºC PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Tyagi & Pedrioli (2015) Kshitiz Tyagi Patrick G.A. Pedrioli 2015-04-23
PXD001124 Tissue proteomics of splenic marginal zone lymphoma PRIDE Homo sapiens ion trap Polati et al. (2015) Daniela Cecconi Daniela Cecconi 2015-04-23
PXD001684 P. falciparum merozoites phoshoproteome PRIDE Bos taurus , Plasmodium falciparum (isolate 3D7) LTQ Lasonder et al. (2015) Edwin Lasonder Edwin Lasonder 2015-04-23
PXD001333 Anion-Exchange Chromatography of Tryptic and Phosphopeptides: WAX vs. SAX and AEX vs. ERLIC PRIDE Homo sapiens Q Exactive Alpert, Hudecz & Mechtler (2015) Otto Hudecz Andrew Alpert 2015-04-23
PXD001908 The fission yeast MTREC complex targets CUTs and unspliced mRNAs to the nuclear exosome PRIDE Schizosaccharomyces pombe LTQ Orbitrap Zhou et al. (2015) Tamas Fischer Dr. Tamas Fischer 2015-04-22
PXD001885 Arabidopsis endomembrane enrichments: Affinity enrichment of GFP bait PRIDE Arabidopsis thaliana (Mouse-ear cress) Orbitrap Fusion Heard et al. (2015) Alex Jones Alexandra M. E. Jones 2015-04-22
PXD001884 Arabidopsis endomembrane enrichments: Affinity enrichment of mCherry bait PRIDE Arabidopsis thaliana (Mouse-ear cress) Orbitrap Fusion Heard et al. (2015) Alex Jones Alexandra M. E. Jones 2015-04-22
PXD001883 Arabidopsis endomembrane enrichments: Affinity enrichment of RABF2b/RFP-ARA7 PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Heard et al. (2015) Alex Jones Alexandra M. E. Jones 2015-04-22
PXD001882 Arabidopsis endomembrane enrichments: Affinity enrichment ofYFP-RABD2a/ARA5 PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Heard et al. (2015) Alex Jones Alexandra M. E. Jones 2015-04-22
PXD001881 Arabidopsis endomembrane enrichments: Affinity enrichment of YFP-RABG3f PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Heard et al. (2015) Alex Jones Alexandra M. E. Jones 2015-04-22
PXD001880 Arabidopsis endomembrane enrichments: Affinity enrichment of CLC2-GFP in WS-2 PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Heard et al. (2015) Alex Jones Alexandra M. E. Jones 2015-04-22
PXD001879 Arabidopsis endomembrane enrichments: Affinity enrichment of RABF1/ARA6-RFP PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Heard et al. (2015) Alex Jones Alexandra M. E. Jones 2015-04-22
PXD001878 Arabidopsis endomembrane enrichments: Affinity enrichment of YFP-VAMP711 PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Heard et al. (2015) Alex Jones Alexandra M. E. Jones 2015-04-22
PXD001877 Arabidopsis endomembrane enrichments: Affinity enrichment of YFP-GOT1 PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Heard et al. (2015) Alex Jones Alexandra M. E. Jones 2015-04-22
PXD001306 Cell line adaptation PRIDE Canis familiaris (Canis lupus familiaris) ultraflex Dataset with its publication pending Sabine Kluge Erdmann Rapp 2015-04-22
PXD001614 Potato Aphid Salivary Proteome: Identification of Aphid Phosphoproteins and Tomato Host Proteins MassIVE Macrosiphum euphorbiae LTQ Dataset with its publication pending zhouxin shen Isgouhi Kaloshian 2015-04-21
PXD000729 TAF10 interacts with GATA1 transcription factor and controls mouse erythropoiesis PRIDE Homo sapiens , Mus musculus LTQ Orbitrap; LTQ Papadopoulos et al. (2015) Petros Papadopoulos Frank Grosveld 2015-04-21
PXD000791 Bacillus licheniformis exponential phase PRIDE Bacillus licheniformis LTQ Orbitrap; Fourier Transform Ion Cyclotron Resonance Mass Spectrometer Dataset with its publication pending Birgit Voigt Prof. Michael Hecker 2015-04-21
PXD002072 Low pH Solid Phase Amino-Labeling of Complex Peptide Digests with TMTs Improves Peptide Identification Rates for Multiplexed Global Phosphopeptide Analysis PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending Vikram Mitra Andrew H. Thompson 2015-04-21
PXD001782 The use of ubiquitin lysine mutants to characterize E2-E3 linkage specificity: mass spectrometry offers a cautionary 'tail' MassIVE Homo sapiens LTQ Velos Dataset with its publication pending Tharan Srikumar Brian Raught 2015-04-20
PXD002037 Reanalysis of spike-in samples PRIDE Streptoccous pyogenes LTQ Orbitrap XL ETD Sandin, Chawade & Levander (2015) Fredrik Levander Fredrik Levander 2015-04-20
PXD001938 Quantitative proteomics of human NPC1-I1061T mutant fibroblasts provides insights into the pathogenesis of Niemann-Pick Type C disease PRIDE Homo sapiens LTQ Orbitrap Velos Rauniyar et al. (2015) Navin Rauniyar John R Yates, 3rd 2015-04-20
PXD001218 Large yellow croaker skin mucus proteome PRIDE Larimichthys crocea (Large yellow croaker) (Pseudosciaena crocea) TripleTOF 5600 Ao et al. (2015) fan ding Xinhua Chen 2015-04-17
PXD001725 A Protein Deep Sequencing Evaluation of Metastatic Melanoma Tissues, unfractionated approach PRIDE Homo sapiens Q Exactive Welinder et al. (2015) Krzysztof Pawlowski György Marko-Varga 2015-04-17
PXD001724 A Protein Deep Sequencing Evaluation of Metastatic Melanoma Tissues, fractionated approach PRIDE Homo sapiens Q Exactive Welinder et al. (2015) Krzysztof Pawlowski György Marko-Varga 2015-04-17
PXD001070 Growth cone localization of the mRNA encoding a chromatin regulator modulates neurite outgrowth PRIDE Mus musculus Q Exactive Moretti et al. (2015) Alex von kriegsheim Alex von Kriegsheim 2015-04-17
PXD001464 Multiphasic chip performance characterization using human thyroid cancer cell line SW1736 and human plasma PRIDE Homo sapiens TripleTOF 5600 Krisp et al. (2015) Christoph Krisp Assoc Prof Mark P Molloy 2015-04-15
PXD001711 Casein kinase 2 (CK2) phosphorylates the deubiquitylase OTUB1 at Ser16 to trigger its nuclear localisation. PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Gopal Sapkota Gopal P Sapkota 2015-04-15
PXD001550 Human CRC cell line baseline phosphoproteomics PRIDE Homo sapiens Q Exactive Piersma et al. (2015) Sander Piersma Connie Ramona Jimenez 2015-04-15
PXD001546 Reproducibility of label-free single-shot phosphoproteomics applied to CRC cell lines PRIDE Homo sapiens Q Exactive Piersma et al. (2015) Sander Piersma Connie Ramona Jimenez 2015-04-15
PXD001081 Proteomics analysis of rough endoplasmic reticulum in pancreatic beta cells PRIDE Mus musculus QSTAR Lee et al. (2014) Xuequn Chen Xuequn Chen 2015-04-15
PXD002068 Venom proteome of the box jellyfish Chironex fleckeri MassIVE Chironex fleckeri TripleTOF 5600; QSTAR Elite Dataset with its publication pending Jason Mulvenna Jason Mulvenna 2015-04-14
PXD001927 An improved protocol to study the plant cell wall proteome PRIDE Medicago sativa LTQ Orbitrap XL Dataset with its publication pending kjell sergeant Jenny Renaut 2015-04-14
PXD001929 Label-free protein quantification in freshly ejaculated versus post-mating spermatophores of the noble crayfish Astacus astacus PRIDE Astacus astacus (Noble crayfish) (Astacus fluviatilis) LTQ Orbitrap Elite Niksirat et al. (2015) Hamid Niksirat Professor Peter James 2015-04-13
PXD001871 Proteomic analysis of Citrus sinensis roots and leaves in response to long-term magnesium-deficiency PRIDE Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis) TripleTOF 5600 Peng et al. (2015) Lintong Yang Lisong Chen 2015-04-13
PXD001858 Faustovirus global proteome PRIDE Faustovirus Synapt G2-S HDMS Reteno et al. (2015) ARMSTRONG Nicholas Eric CHABRIERE 2015-04-13
PXD001469 Silkworm cocoon LC-MS/MS PRIDE Bombyx mori (Silk moth) Q Exactive Zhang et al. (2015) Yan Zhang Qingyou Xia 2015-04-13
PXD001666 Quantitative proteomics of heat-treated human cells show an across-the-board mild depletion of housekeeping proteins to massively accumulate few HSPs PRIDE Homo sapiens LTQ Orbitrap Velos Finka et al. (2015) Manfredo Quadroni Pierre Goloubinoff 2015-04-10
PXD001848 Global Analysis of Protein Folding Thermodynamics for Disease State Characterization, MCF7 vs MDAMB231 PRIDE Homo sapiens Q Exactive Adhikari, West & Fitzgerald (2015) Jagat Adhikari Michael C. Fitzgerald 2015-04-10
PXD001847 Global Analysis of Protein Folding Thermodynamics for Disease State Characterization, MCF7 vs MCF10A PRIDE Homo sapiens Q Exactive Adhikari, West & Fitzgerald (2015) Jagat Adhikari Michael C. Fitzgerald 2015-04-10
PXD001383 Human Transcription Factors LC-MSMS PRIDE Homo sapiens LTQ Li et al. (2015) Xu Li Junjie Chen 2015-04-08
PXD001463 Identification of RNA binding proteins that interact with AU-rich elements of Lif 3`UTR PRIDE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Karsten Boldt Dr. Karsten Boldt 2015-04-08
PXD000288 Deep muscle proteome PRIDE Mus musculus Q Exactive Dataset with its publication pending Mario Oroshi Prof. Matthias Mann 2015-04-08
PXD001609 Validation of a novel shotgun proteomic workflow for the discovery of protein-protein interactions: focus on ZNF521 PRIDE Homo sapiens Q Exactive Bernaudo et al. (2015) SHIBU KRISHNAN Professor Giovanni Cuda 2015-04-07
PXD001943 Shotgun proteomic analysis of embryonic axis of soybean seeds during germination under salt stress PRIDE Glycine max (Glycine hispida) LTQ Orbitrap Velos Fercha et al. (2016) riccardo zenezini Aldo Laganà 2015-04-07
PXD002018 Refined preparation and use of K-GG antibody enables routine quantification of ubiquitination sites MassIVE Homo sapiens Q Exactive Dataset with its publication pending Karl Clauser Steven A. Carr 2015-04-03
PXD002017 Proteomic Mapping of Mitochondria in Living Cells via Spatially Restricted Enzymatic Tagging MassIVE Homo sapiens Q Exactive Dataset with its publication pending Karl Clauser Steven A. Carr 2015-04-03
PXD002016 EMRE is an Essential Component of the Mitochondrial Calcium Uniporter Complex MassIVE Homo sapiens Q Exactive Dataset with its publication pending Karl Clauser Steven A. Carr 2015-04-03
PXD001857 Rest recruits neuronal Tet3 to induce chromatin remodeling and gene expression PRIDE Mus musculus LTQ Orbitrap Dataset with its publication pending David Eisen Stylianos Michalakis 2015-04-02
PXD001526 Rumen metaproteomics PRIDE Eukaryota , Bacteria, Archaea Q Exactive Deusch & Seifert (2015) Jana Seifert Jana Seifert 2015-04-01
PXD001741 Piwi proteins and piRNAs in mammalian oocytes and early embryos PRIDE Bos taurus Q Exactive Roovers et al. (2015) F Butter Falk Butter 2015-04-01
PXD001991 Proteomic analysis of normal colon epithelium MassIVE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Robbert Slebos Daniel Liebler 2015-03-30
PXD001980 Two distinct modes for propagation of histone PTMs across the cell cycle PRIDE Homo sapiens LTQ Orbitrap Alabert et al. (2015) Andreas Schmidt Axel Imhof 2015-03-30
PXD000697 Alterations in the Interactome of Serine/Threonine Protein Phosphatase Type-1 in Atrial Fibrillation Patients PRIDE Homo sapiens , Mus musculus Q Exactive; LTQ Orbitrap Elite Chiang et al. (2015) Nicolas Lebesgue Arjen Scholten 2015-03-30
PXD001876 Identification of myristoylated proteins in zebrafish (Danio rerio) PRIDE Danio rerio (Brachydanio rerio) Q Exactive Broncel et al. (2015) Remigiusz Serwa Edward W. Tate 2015-03-30
PXD001863 Identification of myristoylated proteins in Human cell lines (HEK293, HeLa, MCF7) PRIDE Homo sapiens Q Exactive Broncel et al. (2015) Remigiusz Serwa Edward W. Tate 2015-03-30
PXD000728 Motif-based Isotopic Quantitative Proteomics for Absolute Phosphorylation Stoichiometry Measurement PRIDE Homo sapiens TripleTOF 5600 Dataset with its publication pending Chia-Feng Tsai Yu-Ju Chen 2015-03-30
PXD001474 Label-free analysis of HCV-associated hepatic fibrosis PRIDE Homo sapiens LTQ Orbitrap Elite Bracht et al. (2015) Thilo Bracht Jun. Prof. Dr. Barbara Sitek 2015-03-30
PXD001823 Feasibility of protein turnover studies in prototroph yeast PRIDE Saccharomyces cerevisiae (Baker's yeast) Q Exactive Martin-Perez & Villén (2015) Miguel Martin Perez Judit Villen 2015-03-27
PXD001541 Quantifying histone PTMs by bottom-up MS PRIDE Homo sapiens LTQ Orbitrap Velos Yuan et al. (2015) Zuo-Fei Yuan Benjamin A. Garcia 2015-03-27
PXD001719 Quantitative proteomics analysis of the Arg/N-end rule pathway of targeted degradation in Arabidopsis roots PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Zhang et al. (2015) Hongtao Zhang Frederica L. Theodoulou 2015-03-26
PXD000734 Proteomic Analysis of Human Liver S9 Fraction by 2D-LC-MSMS PRIDE Homo sapiens TripleTOF 5600 Dataset with its publication pending Lekha Sleno Lekha Sleno 2015-03-26
PXD000733 Proteomic Analysis of Mouse Liver S9 Fraction by 2D-LC-MSMS PRIDE Mus musculus TripleTOF 5600 Dataset with its publication pending Lekha Sleno Lekha Sleno 2015-03-26
PXD000731 Proteomic Analysis of Mouse Liver Microsomes by 2D-LC-MSMS PRIDE Mus musculus TripleTOF 5600 Dataset with its publication pending Lekha Sleno Lekha Sleno 2015-03-26
PXD000721 Proteomic Analysis of Human Liver Microsomes by 2D-LC-MSMS PRIDE Homo sapiens TripleTOF 5600 Dataset with its publication pending Lekha Sleno Lekha Sleno 2015-03-26
PXD000720 Proteomic Analysis of Rat Liver Microsomes by 2D-LC-MSMS PRIDE Rattus norvegicus TripleTOF 5600 Dataset with its publication pending Lekha Sleno Lekha Sleno 2015-03-26
PXD000717 Proteomic Analysis of Rat Liver S9 Fraction by 2D-LC-MSMS PRIDE Rattus norvegicus TripleTOF 5600 Dataset with its publication pending Lekha Sleno Lekha Sleno 2015-03-26
PXD000955 Highly accurate protein complex retrieval by affinity enrichment MS rather than affinity purification MS PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Keilhauer, Hein & Mann (2015) Mario Oroshi Matthias Mann 2015-03-26
PXD001385 Intensity-based label-free proteomics using a quadrupole orbitrap mass spectrometer PRIDE Escherichia coli, Homo sapiens Q Exactive Shalit et al. (2015) Yishai Levin Yishai Levin 2015-03-25
PXD001844 Analysis of the Candida albicans phosphoproteome PRIDE Candida albicans Q Exactive; Orbitrap Fusion Willger et al. (2015) Arminja Kettenbach Arminja Kettenbach 2015-03-25
PXD001793 Proteome response in maize to methyl jasmonate PRIDE Zea mays QSTAR Dataset with its publication pending Guohua Yin Guohua Yin 2015-03-25
PXD000724 Proteomic analysis of glycosomes from Leishmania donovani PRIDE Leishmania donovani LTQ Orbitrap Velos Jamdhade et al. (2015) Akhilesh Pandey AKHILESH PANDEY 2015-03-25
PXD001179 Spaceflight adaptation requires organ specific alterations in the proteomes of Arabidopsis PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Ferl et al. (2015) Jin Koh Jin Koh 2015-03-24
PXD001286 The dynamics of protein-bound methionine oxidation events in Arabidopsis thaliana during oxidative stress PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Jacques et al. (2015) Jonathan Vandenbussche Kris Gevaert 2015-03-24
PXD001957 Proteomic Analysis of wild-type and PIK3CA mutant cell lines MassIVE homo sapiens instrument model: orbi velos Dataset with its publication pending Robbert Slebos Daniel Liebler 2015-03-20
PXD001549 Hsp90 inhibition induces both protein-specific and global changes in the ubiquitinome PRIDE Homo sapiens LTQ Orbitrap; LTQ Orbitrap Velos Quadroni, Potts & Waridel (2015) Manfredo Quadroni Manfredo Quadroni 2015-03-19
PXD001602 Threonine concentration effect on L. lactis growth PRIDE Lactococcus lactis Q Exactive Aller et al. (2015) Karl Peebo Raivo Vilu 2015-03-19
PXD001411 Ancient proteins resolve the evolutionary history of Darwin's South American ungulates PRIDE Equus, Orycteropus afer , Cyclopes didactylus (Silky anteater) (Myrmecophaga didactyla), Mylodon darwinii (Giant ground sloth), Tapirus terrestris (Lowland tapir) (Brazilian tapir), unidentified, Hippopotamus amphibius Q Exactive; LTQ Orbitrap Velos; maXis Welker et al. (2015) Frido Welker Matthew Collins 2015-03-19
PXD001096 Bovine sperm plasma membrane proteomics through biotinylation and subcellular enrichment PRIDE Bos taurus LTQ Orbitrap Kasvandik et al. (2015) Sergo Kasvandik Andres Salumets 2015-03-19
PXD001660 Histone deacetylase inhibitors cause the selective depletion of bromodomain containing proteins PRIDE Homo sapiens LTQ Orbitrap Velos Mackmull et al. (2015) Alessandro Ori Martin Beck 2015-03-18
PXD000776 Quantitative proteomic analysis of large and small extracellular vesicles from prostate cancer cells PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending Wei Yang Wei Yang 2015-03-18
PXD001910 Subcellular organization of single-cell C4 photosynthesis in Bienertia sinuspersici determined by large scale proteomics PRIDE Bienertia sinuspersici, Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Offermann et al. (2015) Giulia Friso Giulia Friso c/o Klaas van Wijk's Lab 2015-03-17
PXD000474 Simulated phosphopeptide spectral library for confident site localization PRIDE Homo sapiens LTQ Orbitrap Velos; Q Exactive Suni et al. (2015) Susumu Imanishi Garry L. Corthals 2015-03-17
PXD001807 Apoplastic proteome under UVB PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Dataset with its publication pending Antonio Masi Antonio Masi 2015-03-17
PXD001561 Phosphoproteome characterization of Sendai-virus infection in human epithelial cells PRIDE Homo sapiens QSTAR Öhman et al. (2015) Tuula Nyman Tuula Nyman 2015-03-17
PXD001131 Microbial life in permafrost: predictions of microbial response to natural thaw using a multi-omics approach PRIDE environmental samples LTQ Orbitrap Velos Hultman et al. (2015) Manesh Shah Jenni Hultman 2015-03-17
PXD001280 Shotgun proteomic analysis of Bordetella pertussis response to iron availability PRIDE Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) LTQ Orbitrap Hayes et al. (2015) Kristin Surmann Frank Schmidt 2015-03-16
PXD001330 Temporal quantitative proteomics of Chikungunya virus infected cells PRIDE Cercopithecidae (Old World monkeys) LTQ FT Ultra Treffers et al. (2015) Emmely Treffers Peter A van Veelen 2015-03-16
PXD001810 SUMO-2 Orchestrates Chromatin Modifiers in Response to DNA Damage PRIDE Homo sapiens Q Exactive; LTQ Orbitrap Velos Hendriks et al. (2015) Ivo Hendriks Alfred C.O. Vertegaal 2015-03-16
PXD001736 System-wide analysis of SUMOylation dynamics in response to replication stress reveals novel SUMO target proteins and acceptor lysines relevant for genome stability PRIDE Homo sapiens Q Exactive Xiao et al. (2015) Jer-gung Chang Alfred Vertegaal 2015-03-12
PXD001572 Interactome analysis of PYHIN immune regulators PRIDE Homo sapiens LTQ Orbitrap Velos Diner et al. (2015) T Greco Ileana M Cristea 2015-03-12
PXD000887 Proteomics analysis of the effect of Slf1 deletion on yeast response to oxidative stress via LC-MSMS PRIDE Saccharomyces cerevisiae (Baker's yeast) Dionex instrument model; Mascot; Progenesis LC-MS; LTQ Orbitrap Elite Kershaw et al. (2015) David Talavera Christopher Grant 2015-03-12
PXD000780 Bacillus pumilus exponential phase PRIDE Bacillus pumilus (strain SAFR-032) LTQ Orbitrap Handtke et al. (2014) Birgit Voigt Michael Hecker 2015-03-12
PXD001351 Proteome profile of the endomembrane of developing coleoptiles from switchgrass PRIDE Panicum virgatum Q Exactive Lao et al. (2015) Jeemeng Lao Joshua Heazlewood 2015-03-12
PXD001202 Identification of cytoplasmic proteins interacting with unliganded estrogen receptor α and β- in human breast cancer cells PRIDE Homo sapiens QSTAR Stellato et al. (2015) Tuula Nyman Tuula Nyman 2015-03-11
PXD000528 Melanoma NRAS PRIDE Homo sapiens Q Exactive; LTQ Orbitrap Elite Vogel et al. (2015) Teck Yew Low Albert J.R. Heck 2015-03-11
PXD001649 Pom1-AS quantitative phosphoproteomics PRIDE Schizosaccharomyces pombe LTQ Orbitrap Kettenbach et al. (2015) Scott Gerber Scott Gerber 2015-03-09
PXD001611 Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium PRIDE Mycoplasma pneumoniae M29 LTQ Orbitrap Lluch-Senar et al. (2015) Javier Delgado Luis Serrano 2015-03-03
PXD000719 Rat Brain LC-MS/MS PRIDE Rattus norvegicus LTQ Orbitrap Elite Wildburger et al. (2015) Norelle Wildburger Carol Lynn Nilsson 2015-03-03
PXD000980 The proteome of Synechocystis sp. PCC 6803 cells grown under light-activated heterotrophic growth PRIDE Synechocystis sp. PCC 6803 Thermo Scientific instrument model Plohnke et al. (2015) Nicole Plohnke Sascha Rexroth 2015-03-03
PXD001349 Redox proteomics of Arabidopsis cells under salicylate and flg22 treatments PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Liu et al. (2015) Pei Liu Yiji Xia 2015-03-03
PXD001860 PNNL Biodiversity Library - Microbial Section MassIVE Acidiphilium cryptum JF-5, Actinosynnema mirum DSM 43827, Anabaena variabilis, Anaeromyxobacter dehalogenans, Anaplasma phagocytophilum, Arthrobacter sp. FB24, Bacillus anthracis str. Ames, Bacillus anthracis str. Sterne, Bacillus subtilis subsp. subtilis LTQ; LTQ FT; LTQ Orbitrap; LTQ Orbitrap Velos Dataset with its publication pending Sam Payne Sam Payne 2015-03-02
PXD001681 HA-mSLX4 wild type and SIMdependent interactors PRIDE Homo sapiens , Mus musculus Q Exactive González-Prieto et al. (2015) Román González-Prieto Alfred C O Vertegaal 2015-03-02
PXD001594 Specific growth rate-dependent proteome resource allocation dynamics in Escherichia coli PRIDE Escherichia coli LTQ Orbitrap Peebo et al. (2015) Karl Peebo Raivo Vilu 2015-02-27
PXD001362 Direct evidence of milk consumption from ancient human dental calculus, UK PRIDE Homo sapiens LTQ Orbitrap Velos; Q Exactive; LTQ Orbitrap Elite Warinner et al. (2014) Jessica Hendy Matthew Collins 2015-02-26
PXD001359 Direct evidence of milk consumption from ancient human dental calculus, northern southwest Asia PRIDE Homo sapiens Q Exactive Warinner et al. (2014) Jessica Hendy Matthew Collins 2015-02-26
PXD001272 Giardia duodenalis Assemblage A Quantitative Proteomics PRIDE Giardia intestinalis assemblage A LTQ Emery, Lacey & Haynes (2015) Samantha Emery Professor Paul A Haynes 2015-02-26
PXD001573 Enrichment or depletion? The impact of stool pretreatment on metaproteomic characterization of the human gut microbiota PRIDE Homo sapiens LTQ Orbitrap Velos Tanca et al. (2015) Alessandro Tanca Maria Filippa Addis 2015-02-25
PXD001361 Direct evidence of milk consumption from ancient human dental calculus, northern Europe PRIDE Homo sapiens LTQ Orbitrap Velos; Q Exactive Warinner et al. (2014) Jessica Hendy Matthew Collins 2015-02-25
PXD001360 Direct evidence of milk consumption from ancient human dental calculus, central Europe PRIDE Homo sapiens Q Exactive Warinner et al. (2014) Jessica Hendy Matthew Collins 2015-02-25
PXD001357 Direct evidence of milk consumption from ancient human dental calculus, St Helena PRIDE Homo sapiens Q Exactive; LTQ Orbitrap Elite Warinner et al. (2014) Jessica Hendy Matthew Collins 2015-02-25
PXD001241 ERLIC-based strategies for combined quantitative proteome and phosphoproteome analysis with limited sample amounts PRIDE Homo sapiens LTQ Orbitrap Velos Loroch et al. (2015) Stefan Loroch Albert Sickmann 2015-02-25
PXD001644 Proteomic analysis of Bombus terrestris queen haemolymph PRIDE Bombus terrestris (Buff-tailed bumblebee) (Apis terrestris) LTQ Orbitrap XL Dataset with its publication pending James Carolan James C Carolan 2015-02-24
PXD001612 Roles of proteome dynamics and cytokinin signaling in root-to-hypocotyl ratio changes induced by shading roots of Arabidopsis seedlings PRIDE Arabidopsis thaliana (Mouse-ear cress) maXis Novák et al. (2015) Martin Cerny Martin Cerny 2015-02-23
PXD001213 Tissue Engineered Rat Lung Proteomics PRIDE Rattus norvegicus LTQ Orbitrap Velos Hill et al. (2015) Ryan Hill Kirk Hansen 2015-02-20
PXD000808 Transcriptome and Proteomic Analysis of Mango (Mangifera indica Linn) Fruits PRIDE Mangifera indica LTQ Orbitrap Velos Wu et al. (2014) Hongxia Wu Hongxia Wu 2015-02-20
PXD001527 Proteomics of muscle chronological ageing in post-menopausal women PRIDE Homo sapiens LTQ Velos Gueugneau et al. (2014) Coudy-Gandilhon cécile Bechet Daniel 2015-02-19
PXD000164 A Metaproteomics Approach to Elucidate Host and Pathogen Protein Expression during Catheter-Associated Urinary Tract Infections PRIDE Pseudomonas sp., Homo sapiens , Morganella, Morganella LTQ Orbitrap Velos Lassek et al. (2015) Christian Lassek Katharina Riedel 2015-02-17
PXD001377 Unraveling Lysine Deacetylase Inhibitor Specificities for Endogenous Acetylation Sites PRIDE Homo sapiens , Mus musculus Q Exactive Dataset with its publication pending Christian Schölz Chunaram Choudhary 2015-02-16
PXD000876 Proteomic analysis of three Borrelia burgdorferi sensu lato species and disseminating clones: relevance for Lyme vaccine design. PRIDE Borrelia burgdorferi 297 ion trap Schnell et al. (2014) Schnell Gilles Laurence Sabatier 2015-02-16
PXD001811 Proteome analysis of human lymphotropic tumor viruses MassIVE Homo sapiens LTQ; LTQ XL ETD Dresang et al. (2011) Matthew Monroe Richard D. Smith 2015-02-12
PXD001467 Proteome resource allocation in bacteria PRIDE Escherichia coli TripleTOF 5600 Hui et al. (2015) Sheng Hui Terence Hwa 2015-02-12
PXD001401 Phytophthora hyphae and cysts PRIDE Phytophthora sojae, Phytophthora pisi LTQ Orbitrap Velos Hosseini et al. (2015) Svante Resjo Erik Andreasson 2015-02-10
PXD001536 Fast Profiling of Protease Specificity reveals similar substrate specificities for cathepsins K, L and S PRIDE Homo sapiens LTQ Orbitrap Velos Vizovišek et al. (2015) Emmy Van Quickelberghe Kris Gevaert 2015-02-10
PXD001293 Comaprison of the phagosome proteome of bone marrow-derived macrophages and RAW264.7 PRIDE Mus musculus Q Exactive Guo et al. (2014) Matthias Trost Matthias Trost 2015-02-10
PXD001553 Proteomic profiling of cathepsin specificity by FPPS PRIDE Homo sapiens LTQ Orbitrap Velos Vizovišek et al. (2015) Marko Fonovic Marko Fonovic 2015-02-10
PXD001479 The gut microbiota affects the mucus barrier PRIDE Mus musculus LTQ Orbitrap Jakobsson et al. (2015) Ana M. Rodriguez-Pineiro Gunnar C. Hansson 2015-02-09
PXD000298 Neospora Caninum whole proteome study PRIDE Neospora Caninum (strain Liverpool) LTQ Orbitrap Velos Krishna et al. (2015) Ritesh Krishna Ritesh Krishna 2015-02-09
PXD000297 Toxoplsama Gondii whole proteome study PRIDE Toxoplasma gondii RH LTQ Orbitrap Krishna et al. (2015) Ritesh Krishna Andrew Jones 2015-02-09
PXD001434 Interaction of cGMP-dependent protein kinase and HAP1 PRIDE Homo sapiens , Rattus norvegicus LTQ Orbitrap; LTQ Orbitrap Velos Corradini et al. (2015) Eleonora Corradini Albert J.R. Heck 2015-02-09
PXD001462 Identification of Alpha-Synuclein Interacting Synaptosomal Proteins PRIDE Sus scrofa domesticus (domestic pig) LTQ Orbitrap Betzer et al. (2015) Min Shi Poul Henning Jensen 2015-02-09
PXD001448 Myotubularin-related proteins control abscission_StDenis_MTMR_P84_VS6-7-8-11-12 MassIVE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Gingras Lab Anne-Claude Gingras 2015-02-06
PXD001641 Single muscle fiber proteomics reveals unexpected mitochondrial specialization PRIDE Mus musculus Q Exactive Murgia et al. (2015) Mario Oroshi Matthias Mann 2015-02-05
PXD000782 A quantitative proteomics tool to identify DNA-protein interactions in primary cells or blood PRIDE Homo sapiens Q Exactive Hubner et al. (2015) Nina Hubner Hendrik G. Stunnenberg 2015-02-04
PXD000672 PCT-SWATH kidney tissues PRIDE Homo sapiens TripleTOF 5600 Guo et al. (2015) Tiannan Guo Ruedi Aebersold 2015-02-04
PXD001065 Compartment resolved reference map from highly purified naive, activated, effector and memory CD8+ cells PRIDE Mus musculus LTQ Orbitrap Velos Zanker et al. (2015) Janina Tomm Martin von Bergen 2015-02-04
PXD001648 Characterization of the E.coli proteome and its modifications during growth and ethanol stress PRIDE Escherichia coli LTQ Orbitrap Elite Soufi et al. (2015) Karsten Krug Boris Macek 2015-02-03
PXD000660 TAILS with Arabidopsis thaliana wilde typ, tic56-1and ppi2 PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Köhler et al. (2015) Sacha Baginsky 2015-02-03
PXD001207 The proteome of tic56-1 plastids after thermolysin treatment PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Köhler et al. (2015) Sacha Baginsky Sacha Baginsky 2015-02-03
PXD000737 iTRAQ-based quantitative proteomics analysis of human HNSCC cells PRIDE Homo sapiens LTQ Orbitrap Syed et al. (2015) Akhilesh Pandey Akhilesh Pandey 2015-02-02
PXD001180 Human brain phosphoproteome analyzed by refined phosphopeptide enrichment and high resolution LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Elite Tan et al. (2015) xusheng wang Junmin Peng 2015-02-02
PXD001677 SIM-XL: a powerful and user-friendly tool for peptide cross-linking analysis PRIDE Homo sapiens Q Exactive Lima et al. (2015) Diogo Borges Lima Paulo Costa Carvalho 2015-02-02
PXD001771 ddDT results from 2014 MCP alpha-lytic protease proteomics paper MassIVE Schizosaccharomyces pombe instrument model: LTQ Orbitrap Velos ETD Dataset with its publication pending Jesse Meyer EA Komives 2015-01-30
PXD000994 TurboRAW2MGF: Removing isobaric-related ions improves the peptide/protein identification PRIDE Homo sapiens , Rattus norvegicus LTQ Orbitrap Velos Sheng et al. (2014) Quanhu Sheng Quanhu Sheng 2015-01-30
PXD001101 Identifying novel targets of oncogenic EGF receptor signaling in lung cancer through global phosphoproteomics PRIDE Homo sapiens LTQ Orbitrap; LTQ Orbitrap Elite Zhang et al. (2015) Udayan Guha Udayan Guha 2015-01-30
PXD001117 Human Cardiac Stem Cells Receptome PRIDE Homo sapiens LTQ Orbitrap Elite Gomes-Alves et al. (2014) Patrícia Gomes-Alves Paula M. Alves 2015-01-30
PXD001183 Proteomic characterisation of microtubule-dependent modulation of adhesion complexes PRIDE Homo sapiens LTQ Orbitrap Elite Ng et al. (2014) Daniel Ng Martin James Humphries 2015-01-30
PXD001493 YBX1 interacting protein PRIDE Homo sapiens LTQ Orbitrap Wang et al. (2014) Ruibing Chen Ruibing Chen 2015-01-30
PXD001524 Human testicular matrix PRIDE Homo sapiens LTQ Orbitrap Baert et al. (2015) Michael Landreh Hans Jornvall 2015-01-30
PXD001574 Phospho-iTRAQ PRIDE Homo sapiens Q Exactive; TripleTOF 5600; Synapt MS Glibert et al. (2015) Maarten Dhaenens Dieter Deforce 2015-01-30
PXD001761 Spike-in dilution series in S. pyogenes cell lysate, (Chawade et al. 2014) PeptideAtlas Streptococcus pyogenes TSQ Vantage Chawade et al. (2014) Fredrik Levander Fredrik Levander 2015-01-29
PXD001760 SWATH Analysis of Yeast Proteome over Time in Response to Osmotic Stress: SRM Dataset PeptideAtlas Saccharomyces cerevisiae TSQ Vantage Selevsek et al. (2015) Lucia Espona Pernas Ruedi Aebersold 2015-01-29
PXD001759 Mouse Liver Proteins implicated in Metabolism and Type 2 Diabetes. PeptideAtlas Mus musculus 4000 QTRAP no publication Alexander Schäfer Prof. Dr. Marius Ueffing 2015-01-29
PXD001757 Study of EphA2 involvement in cancer cells TEM PeptideAtlas Homo sapiens TSQ Vantage Locard-Paulet, et al. (submitted) Marie Locard-Paulet Claus Jorgensen 2015-01-29
PXD001756 Targeted proteomic analyses of nasal lavage fluid in persulfate-challenged hairdressers with bleaching powder-associated rhinitis PeptideAtlas Homo sapiens QTRAP 5500 Mörtstedt et al. (2015) Neserin Ali Division of Occupational and Environmental Medicine 2015-01-29
PXD001755 RPD and SID calibration standards for four human plasma peptides in various complex matrices PeptideAtlas Homo sapiens 4000 QTRAP Yau et al. (2014) Yunki Yau Prof. Mark Raftery 2015-01-29
PXD001754 Identification of Biomarkers for the Diagnosis of Rickettsial Disease: Qualification PeptideAtlas Homo sapiens TSQ Vantage no publication Kizhake Soman Allan R. Brasier 2015-01-29
PXD001753 Helicobacter Pylori-Induced PUD Biomarkers Qualification PeptideAtlas Homo sapiens TSQ Vantage no publication Kizhake Soman Allan R. Brasier, MD 2015-01-29
PXD001752 Dengue Fever (Brazil) biomarkers - Qualification PeptideAtlas Homo sapiens TSQ Vantage no publication Kizhake Soman Allan R. Brasier 2015-01-29
PXD001751 Human Serum LC-MRM-MS data collected from two cohorts of HCC and cirrhosis patients PeptideAtlas Homo sapiens TSQ Vantage no publication Habtom Ressom Habtom W. Ressom 2015-01-29
PXD001750 Extended MRM/SRM experiment for 112 Mouse/Rat Brian Proteins PeptideAtlas Mus musculus QTRAP 5500 Wei, et al. (submitted) Christopher Colangelo Christopher Colangelo 2015-01-29
PXD001749 Targeted Proteome Pipeline and Assay for 112 Rat Brain Synaptic Proteins, Data Collection PeptideAtlas Rattus norvegicus TripleTOF 5600 Colangelo et al. (2014) Christopher Colangelo Christopher Colangelo 2015-01-29
PXD001748 Candidate Biomarkers for Invasive Aspergillosis, Verification PeptideAtlas Homo sapiens TSQ Vantage no publication Kizhake Soman Allan R. Brasier 2015-01-29
PXD001747 PBMC Proteomic Analysis for the Identification of Biomarkers of Chagasic Cardiomyopathy PeptideAtlas Homo sapiens TSQ Vantage no publication Kizhake Soman Allan R. Brasier 2015-01-29
PXD001746 Signal transduction reaction monitoring deciphers site-specific PI3K-mTOR/MAPK pathway dynamics PeptideAtlas Homo sapiens TSQ Vantage Graaf, et al. Erik de Graaf Albert J.R. Heck 2015-01-29
PXD001745 Automated Absolute and Relative Quantification of SRM Data PeptideAtlas Drosophila melanogaster TSQ Vantage Unpublished Sandra Goetze Erich Brunner 2015-01-29
PXD001744 Label-free quantification of sentinel proteins, phosphopeptides and degradation products PeptideAtlas Saccharomyces cerevisiae QTRAP 5500 Soste et al. (2014) Martin Soste Paola Picotti 2015-01-29
PXD000984 Quantitative phosphoproteomic analysis of IL-33 mediated signaling PRIDE Mus musculus LTQ Orbitrap Elite Pinto et al. (2015) Akhilesh Pandey Akhilesh Pandey 2015-01-29
PXD001455 Global quantitative proteomics reveals novel factors in the ecdysone signaling pathway in Drosophila melanogaster. PRIDE Drosophila melanogaster (Fruit fly) Q Exactive Sap et al. (2014) Jeroen Demmers Jeroen AA Demmers 2015-01-29
PXD001555 Differentiation-inducing factor (DIF) SILAC PRIDE Dictyostelium discoideum (Slime mold) LTQ Orbitrap Elite Sugden et al. (2014) Chris Sugden JEFF WILLIAMS 2015-01-28
PXD001186 A role for CPT1A to prevent blood vessel permeability revealed by in depth proteomics PRIDE Homo sapiens LTQ Orbitrap Elite Dataset with its publication pending Sara Zanivan Sara Zanivan 2015-01-28
PXD001656 Quantitative proteomic analysis of Burkholderia pseudomallei Bsa Type III secretion system effectors using hyper-secreting mutants PRIDE Burkholderia pseudomallei (strain K96243) LTQ Orbitrap Velos Vander Broek et al. (2015) Charles Vander Broek Jo M. Stevens 2015-01-28
PXD001059 Differences in oocyte composition anticipate differences in embryo quality: a proteomic study in inbred mice PRIDE Mus musculus LTQ Orbitrap Velos Pfeiffer et al. (2014) Hannes Drexler Hannes C. A. Drexler 2015-01-28
PXD001153 Quantitative Phosphoproteomics Reveals Crosstalk Between Phosphorylation and O-GlcNAc in the DNA Damage Response Pathway PRIDE Mus musculus LTQ Orbitrap Velos Zhong et al. (2015) Akhilesh Pandey Akhilesh Pandey 2015-01-28
PXD001584 Importance of arginine trasporter ArgP in Francisella by comparative proteomics. PRIDE Francisella tularensis subsp. novicida (strain U112) Q Exactive Ramond et al. (2015) Chiara guerrera Ida Chiara GUERRERA 2015-01-28
PXD001194 PROMIS-Quan: a novel proteomic method for plasma biomarker quantification PRIDE Homo sapiens Q Exactive Harel et al. (2015) Tamar Geiger Tamar Geiger 2015-01-28
PXD000155 Proteomic analysis of integrin activation-state-dependent adhesion complexes PRIDE Homo sapiens instrument model: LTQ Velos; LTQ Velos Byron et al. (2015) Adam Byron 2015-01-27
PXD001370 Aging Mouse Brain Mitochondria LC-MS/MS PRIDE Mus musculus TripleTOF 5600 Stauch et al. (2014) Kelly Stauch Howard Fox 2015-01-27
PXD001733 Lenalidomide Causes Selective Degradation of IKZF1 and IKZF3 in Multiple Myeloma Cells MassIVE Homo sapiens Q Exactive Dataset with its publication pending Karl Clauser Steven A. Carr 2015-01-26
PXD001343 Characterization of the gila monster (Heloderma suspectum suspectum) venom proteome PRIDE Heloderma suspectum suspectum (Reticulate Gila monster) TripleTOF 5600 Sanggaard et al. (2015) Thomas F. Dyrlund Jan Johannes Enghild 2015-01-26
PXD001453 Spatial variation in transcript and protein abundance of Atlantic salmon during feeding migration in the Baltic Sea PRIDE Salmo salar (Atlantic salmon) LTQ Orbitrap Kanerva et al. (2014) Mirella Kanerva Kristiina A. Vuori 2015-01-26
PXD000979 K63 polyubiquitination is a new modulator of the oxidative stress response, SRM data PRIDE Saccharomyces cerevisiae (Baker's yeast) Q Exactive Silva, Finley & Vogel (2015) Gustavo Silva Christine Vogel 2015-01-26
PXD000960 K63 polyubiquitination is a new modulator of the oxidative stress response, shotgun data PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Silva, Finley & Vogel (2015) Gustavo Silva Christine Vogel 2015-01-26
PXD001126 Building high-quality assay libraries for targeted analysis of SWATH MS data PRIDE Saccharomyces cerevisiae (Baker's yeast) TripleTOF 5600 Schubert et al. (2015) Ben Collins Ruedi Aebersold 2015-01-26
PXD001212 A mammalian transcription factor-specific peptide repository for targeted proteomics PRIDE Mus musculus LTQ Orbitrap Simicevic et al. (2014) Romain Hamelin Marc Moniatte 2015-01-23
PXD001082 Quantitative comparison of CSF proteins from T. b. gambiense and T. b. rhodesiense HAT patients PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Natalia Tiberti Jean-Charles Sanchez 2015-01-23
PXD001010 SWATH Analysis of Yeast Proteome over Time in Response to Osmotic Stress PRIDE Saccharomyces cerevisiae (Baker's yeast) TSQ Quantum; TripleTOF 5600 Selevsek et al. (2015) Lucia Espona Pernas Ruedi Aebersold 2015-01-22
PXD001587 DIA-Umpire: comprehensive computational framework for data independent acquisition proteomics PRIDE Escherichia coli, Homo sapiens Q Exactive; TripleTOF 5600 Tsou et al. (2015) Chih-Chiang Tsou Alexey I. Nesvizhskii 2015-01-21
PXD001005 Comparative phosphoproteomic analysis of mammalian renal glomeruli PRIDE Rattus norvegicus , Bos taurus LTQ Orbitrap Rinschen et al. (2014) Markus Rinschen Markus Rinschen 2015-01-16
PXD001246 Synechocystis 6803 LC-MS/MS PRIDE Synechocystis sp. PCC 6803 LTQ Orbitrap Elite Gao et al. (2014) Yingchun Wang Yingchun Wang 2015-01-16
PXD001068 Phosphoproteome dynamics in onset and maintenance of Oncogene-Induced Senescence, proteome dataset PRIDE Homo sapiens LTQ Orbitrap Velos de Graaf et al. (2014) Erik L. de Graaf Albert Heck 2015-01-15
PXD001667 BioID-based identification of SCF-BTrCP1/2 E3 ligase substrates MassIVE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Tharan Srikumar Brian Raught 2015-01-15
PXD001492 Yeast - phosphoproteome PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Hustedt et al. (2014) Ragna Sack Susan M Gasser 2015-01-12
PXD000523 Phosphoproteome dynamics in onset and maintenance of Oncogene-Induced Senescence, phosphoproteome dataset PRIDE Homo sapiens LTQ Orbitrap Velos de Graaf et al. (2014) Erik L. de Graaf Albert Heck 2015-01-12
PXD000394 Mass spectrometry of HLA-I peptidomes reveals strong effects of protein abundance and turnover on antigen presentation PRIDE Homo sapiens Q Exactive Bassani-Sternberg et al. (2015) Mario Oroshi Matthias Mann 2015-01-12
PXD001394 Global and specific responses of the histone acetylome to systematic perturbation PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap Feller et al. (2015) Ignasi Forne Prof. Dr. Peter Becker 2015-01-09
PXD000033 ATM and ATR- dependent protein phosphorylation induced within 15 minutes after gamma irradiation in Arabidopsis thaliana PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Dataset with its publication pending Elisabeth Roitinger 2015-01-09
PXD001210 An Enhanced in vivo SILAC model for Quantification of Drug Metabolism Enzymes PRIDE Mus musculus LTQ Orbitrap MacLeod et al. (2015) Kenneth MacLeod Jeffrey Tze-Jen Huang 2015-01-09
PXD001647 Anopheles stephensi salivary gland LC-MS/MS PRIDE Anopheles stephensi (Asian malaria mosquito) ultraflex Vijay, Rawat & Sharma (2014) sonam vijay Dr. Arun Sharma 2015-01-08
PXD001651 Q-Exactive HCD data for FFPE colon tissues (five replicate RPLC experiments) MassIVE Homo sapiens Q Exactive Dataset with its publication pending David L. Tabb Daniel C. Liebler 2015-01-08
PXD001657 A Cell-based Systems Biology Assessment of Human Blood to Monitor Immune Responses After Influenza Vaccination PRIDE Homo sapiens LTQ Orbitrap Hoek et al. (2015) Andrew Link Andrew Link 2015-01-08
PXD001240 Benchmarking label-free quantification based on data-independent acquisition (DIA) workflows PRIDE Escherichia coli, Homo sapiens , Saccharomyces cerevisiae (Baker's yeast) Synapt MS Kuharev et al. (2014) Stefan Tenzer Stefan Tenzer 2015-01-07
PXD001184 Phosphoproteomic Analysis Suggests Compensatory Effects in the Piriform Cortex Region of the VX-Exposed Rat PRIDE Rattus norvegicus LTQ Orbitrap Elite Nirujogi et al. (2014) Jennifer Sekowski Jennifer W. Sekowski 2015-01-07
PXD001410 A Themis:SHP complex promotes T cell survival PRIDE Homo sapiens LTQ Orbitrap Paster et al. (2014) Kristin Katsch Professor Oreste Acuto 2015-01-07
PXD001296 Exoproteome of Aspergillus flavus corneal isolates and saprophytes PRIDE Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) LTQ Orbitrap Velos Selvam et al. (2014) Naveen Luke Dharmalingam Kuppamuthu 2015-01-07
PXD001224 A High-resolution Systems-wide Screen for Substrates of the SCFβTrCP Ubiquitin Ligase - reproducibility evaluation PRIDE Homo sapiens LTQ Orbitrap Low et al. (2014) Teck Yew Low Albert J.R. Heck 2015-01-06
PXD001088 A High-resolution Systems-wide Screen for Substrates of the SCFβTrCP Ubiquitin Ligase PRIDE Homo sapiens LTQ Orbitrap Elite Low et al. (2014) Teck Yew Low Albert J.R. Heck 2015-01-06
PXD000175 Proteomic analysis uncover a new function and mode of action for mDia2 PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending AFM Altelaar Maarten Altelaar 2015-01-06
PXD001529 Proteomic characterization of the role of Snail1 in the differentiation of 3T3-L1 fibroblasts PRIDE Mus musculus LTQ Orbitrap; LTQ Orbitrap Velos Peláez-García et al. (2015)Peláez-García et al. (2015) Alberto Pelaez Garcia Ignacio Casal 2015-01-06
PXD001447 AP-MS analysis of sirtuin-4 interactions in human fibroblasts PRIDE Homo sapiens LTQ Orbitrap Velos Mathias et al. (2014) T Greco Ileana Cristea 2015-01-06
PXD001517 Iridovirus and Microsporidian Linked to Honey Bee Colony Decline MassIVE Apis mellifera, Nosema LTQ Dataset with its publication pending Giselle Knudsen Cramer, Robert A. 2015-01-05
PXD001634 KCMF1 links RAD6 to UBR4 and lysosome-mediated degradation MassIVE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Tharan Srikumar Brian Raught 2015-01-05
PXD000991 Method to identify novel proteoform peptides from salivary supernatant. PRIDE Homo sapiens LTQ Orbitrap Jagtap et al. (2014) Pratik Jagtap Timothy Griffin 2015-01-05
PXD001064 Quantitative variability of 342 plasma proteins in a human twin population PRIDE Homo sapiens TripleTOF 5600 Liu et al. (2015) Yansheng Liu Ruedi Aebersold 2015-01-05
PXD000549 Quantitative proteomics of the Neisseria gonorrhoeae cell envelope and membrane vesicles PRIDE Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) 4800 Proteomics Analyzer Zielke et al. (2014) Aleksandra Sikora Aleksandra E. Sikora 2014-12-19
PXD001445 Phosphoproteomic analyses reveal novel cross-modulation mechanisms between two signaling pathways in yeast PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Vaga et al. (2014) Stefania Vaga Ruedi Aebersold 2014-12-19
PXD001461 The E. coli effector EspJ blocks Src kinase activity via amidation and ADP-ribosylation PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Andreas Schlosser Andreas Schlosser 2014-12-19
PXD000497 Proteomics and phosphoproteomics analysis of melanoma BRAF PRIDE Homo sapiens Q Exactive; LTQ Orbitrap Velos; LTQ Orbitrap Elite Smit et al. (2014) Teck Yew Low 2014-12-19
PXD001406 Impact of Regulatory Variation from RNA to Protein PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Zia Khan Yoav Gilad 2014-12-19
PXD001198 In Vivo Assessment of Protease Dynamics in Cutaneous Wound Healing by Degradomics Analysis of Porcine Wound Exudates PRIDE Sus scrofa domesticus (domestic pig) LTQ Orbitrap Sabino et al. (2014) Ulrich auf dem Keller Ulrich auf dem Keller 2014-12-19
PXD000997 Comprehensive Identification of Phosphorylation Sites on the Numb Endocytic Adaptor Protein PRIDE Homo sapiens LTQ Orbitrap; LTQ Orbitrap Velos Krieger et al. (2014) Jonathan Krieger Jane McGlade 2014-12-16
PXD001616 A search for protein biomarkers links olfactory signal transduction to social immunity PRIDE Apis mellifera LTQ Orbitrap; LTQ FT Guarna et al. (2015) Leonard Foster Leonard James Foster 2014-12-16
PXD001303 Analysis of epididymal sperm maturation by top-down mass spectrometry PRIDE Sus scrofa domesticus (domestic pig) LTQ Orbitrap Labas et al. (2015) Labas Valerie Valérie Labas 2014-12-16
PXD001379 LysargiNase cleavage specificity characterization PRIDE Escherichia coli QSTAR Huesgen et al. (2014) Pitter Huesgen Christopher M Overall 2014-12-16
PXD001378 Characterization of LysargiNase peptide fragmentation PRIDE Escherichia coli QSTAR Huesgen et al. (2014) Pitter Huesgen Christopher M Overall 2014-12-16
PXD001122 Specificity profiling of LysargiNase in comparison to trypsin PRIDE Escherichia coli QSTAR Huesgen et al. (2014) Pitter Huesgen Christopher M Overall 2014-12-16
PXD001121 Characterization of LysargiNase for use in phosphoproteomics experiments, part 1 PRIDE Homo sapiens LTQ Orbitrap Huesgen et al. (2014) Pitter Huesgen Christopher M. Overall 2014-12-16
PXD001114 Characterization of LysargiNase for use in phosphoproteomics experiments, partII PRIDE Homo sapiens LTQ Orbitrap Huesgen et al. (2014) Pitter Huesgen Christopher M. Overall 2014-12-16
PXD001113 LysargiNase and tryptic digest of MDA-MB 231 cell lysates PRIDE Homo sapiens LTQ Orbitrap Huesgen et al. (2014) Pitter Huesgen Christopher M Overall 2014-12-16
PXD000114 Metaproteomics of Premature Infant Gut Colonization PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Jacque Young 2014-12-16
PXD001352 Absolute protein quantification allows differentiation of cell specific metabolic routes and functions PRIDE Homo sapiens , Mus musculus Q Exactive Wiśniewski et al. (2014) Mario Oroshi Jacek R Wisniewski 2014-12-15
PXD000959 N-linked glycoproteome of human seminal plasma PRIDE Homo sapiens LTQ Orbitrap Velos Yang et al. (2014) zhou tao Jiahao Sha 2014-12-15
PXD001577 Functional characteristics of neonatal rat beta cells With distinct markers PRIDE Rattus norvegicus Synapt G2 MS Martens et al. (2014) Gertjan Kramer J.M.F.G Aerts 2014-12-12
PXD000814 Proteomics study of chaperone network in Escherichia coli PRIDE Escherichia coli Q Exactive Götzke et al. (2014) Gianluca Maddalo Albert J.R. Heck 2014-12-12
PXD001111 Combining solid phase extraction with ultra-short gradients in LC-MS/MS substantially improves protein identification per unit of time PRIDE Escherichia coli, Homo sapiens Q Exactive Binai et al. (2014) N. Binai Albert Heck 2014-12-12
PXD000899 Cell cycle dependent phosphorylation of transmembrane proteins on the Theileria annulata schizont surface PRIDE Theileria annulata LTQ Orbitrap Velos Wiens et al. (2014) Dong Xia Jonathan Wastling 2014-12-12
PXD001110 The role of PRDX1 in chemoresistance PRIDE Homo sapiens HCTultra Poschmann et al. (2014) Gereon Poschmann Gereon Poschmann 2014-12-12
PXD000716 Proteome-wide analysis of SUMO2 targets in response to pathological DNA replication stress in human cells PRIDE Homo sapiens Q Exactive Bursomanno et al. (2015) Petra Beli Petra Beli 2014-12-09
PXD001284 The Quantitative Changes in the Yeast Hsp70 and Hsp90 Interactomes upon DNA Damage PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Truman et al. (2014) Donald Wolfgeher Stephen J. Kron 2014-12-08
PXD001278 Off-target responses in the HeLa proteome subsequent to transient plasmid transfection using SILAC PRIDE Homo sapiens LTQ Orbitrap Elite Hagen et al. (2014) Animesh Sharma Geir Slupphaug 2014-12-08
PXD001350 Quantitative proteomics reveals the effect of protein glycosylation in soybean root under flooding stress PRIDE Glycine max (Glycine hispida) LTQ Orbitrap Mustafa & Komatsu (2014) Ghazala Mustafa Setsuko Komatsu 2014-12-08
PXD000402 Thermococcus gammatolerans shotgun analysis PRIDE Thermococcus gammatolerans LTQ Orbitrap Yang et al. (2014) Jean ARMENGAUD Jean Armengaud 2014-12-04
PXD001205 Different Binding Motifs of the Celiac Disease Associated HLA Molecules DQ2.5, DQ2.2 and DQ7.5 Revealed by Relative Quantitative Proteomics of Endogenous Peptide Repertoires PRIDE Homo sapiens Q Exactive Bergseng et al. (2015) Gustavo de Souza Gustavo de Souza 2014-12-04
PXD000853 Profiling of human lung tissues on 11 normal control, 11 patient and 11 corresponding mouse xenograft tumours PRIDE Homo sapiens LTQ Orbitrap Elite Li et al. (2014) Jiefei Tong Mike F. Moran 2014-12-04
PXD001259 Stadard peptide mixture plus HeLa PRIDE Homo sapiens , Bos taurus LTQ Orbitrap Aoshima et al. (2014) Ken Aoshima Ken Aoshima 2014-12-04
PXD000986 Quantitative proteomics of soybean root during recovery after flooding PRIDE Glycine max (Glycine hispida) LTQ XL Khan et al. (2014) Mudassar Khan Setsuko Komatsu 2014-12-04
PXD000543 Quantitative analysis of murine T-cells PRIDE Mus musculus LTQ Orbitrap; instrument model: LTQ Orbitrap Gruber et al. (2014) Alexander Schmidt 2014-12-02
PXD001075 Identification of biomarkers for PKD1 using urinary exosomes PRIDE Homo sapiens LTQ Orbitrap Hogan et al. (2014) Roman Zenka Daniel McCormick 2014-12-02
PXD000834 Positional proteomics identification of the natural substrates of cytosolic carboxypeptidases PRIDE Homo sapiens LTQ Orbitrap Velos Tanco et al. (2014) Sebastian Tanco Kris Gevaert 2014-12-02
PXD001381 Highly sensitive phosphoproteomics by tailoring solid-phase extraction to electrostatic repulsion-hydrophilic interaction chromatography PRIDE Homo sapiens LTQ Orbitrap Velos Loroch, Zahedi & Sickmann (2014) Stefan Loroch Albert Sickmann 2014-12-02
PXD001270 Identification of immunodominant antigen among Brucella species (B. abortus and B. melitensis) using hyper immune serum from naturally infected hosts PRIDE Brucella melitensis, Brucella abortus, Brucella ultraflex Wareth et al. (2015) Jayaseelan Murugaiyan Jayaseelan Murugaiyan 2014-12-01
PXD001152 PBC DIGE PRIDE Homo sapiens 4800 Proteomics Analyzer Dataset with its publication pending Chuiwen Deng Yongzhe Li 2014-11-27
PXD001242 The proteome of normal human retina PRIDE Homo sapiens LTQ Orbitrap Elite Zhang et al. (2014) Pingbo Zhang Richard D. Semba, M.D., M.P.H 2014-11-27
PXD001456 Project Grandiose, cell surface protein capture PRIDE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Carl White Peter W Zandstra 2014-11-27
PXD001397 PBC-DIGE PRIDE Homo sapiens 4800 Proteomics Analyzer Deng et al. (2015) Chuiwen Deng Chuiwen Deng 2014-11-27
PXD000382 MetaProSIP protein-SIP data PRIDE uncultured bacterium LTQ Orbitrap Sachsenberg et al. (2014) Timo Sachsenberg 2014-11-27
PXD001528 Paraquat Exposure and Sod2 Knockdown have Dissimilar Impacts on the Drosophila melanogaster Carbonylated Protein Proteome PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap Velos Narayanasamy et al. (2014) David Simpson Scott Gronert 2014-11-26
PXD001534 IDENTIFICATION OF SUMO-2/3 MODIFIED PROTEINS ASSOCIATED WITH MITOTIC CHROMOSOMES MassIVE Homo sapiens LTQ Orbitrap Velos Cubeñas-Potts et al. (2014) Tharan Srikumar Michael Matunis 2014-11-24
PXD001159 Identification of immunoreactive proteins of Mycobacterium avium subsp. Paratuberculosis PRIDE Other Actinobacteria , Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) ultraflex Piras et al. (2014) Paola Roncada Dr Paola Roncada 2014-11-20
PXD001386 Plant Natriuretic Peptides induce a specific set of proteins diagnostic for an adaptive response to abiotic stress PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Dataset with its publication pending Claudius Marondedze Christoph Gehring 2014-11-20
PXD001091 spike-in comparison PRIDE Streptoccous pyogenes LTQ Orbitrap XL ETD Chawade et al. (2014) Fredrik Levander Fredrik Levander 2014-11-20
PXD001031 Secretome of Solanum tuberosum grown in the presence of proalexin PRIDE Solanum tuberosum LTQ Orbitrap XL ETD Burra et al. (2014) Fredrik Levander Fredrik Levander 2014-11-20
PXD000413 Proteome dynamics of mouse embryonic fibroblast reprograming into iPS cells PRIDE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Marco Benevento 2014-11-20
PXD001283 Mass spectrometry imaging of phospholipids in mouse urinary bladder (imzML dataset) PRIDE Mus musculus LTQ Orbitrap Römpp et al. (2010) Andreas Roempp Bernhard Spengler 2014-11-19
PXD001301 CRISPR-Cas9-based knockout of the prion protein and its effect on the proteome PRIDE Mus musculus Orbitrap Fusion Mehrabian et al. (2014) Gerold Schmitt-Ulms Gerold Schmitt-Ulms 2014-11-19
PXD000715 Phosphoproteome of filamentous fungus Aspergillus nidulans PRIDE Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans) Q Exactive Ramsubramaniam, Harris & Marten (2014) Nikhil Ramsubramaniam Mark Marten 2014-11-18
PXD000837 Proteomic analysis of plasma membrane and tonoplast from the leaves of a mangrove plant Avicennia officinalis PRIDE Avicennia TripleTOF 5600 Krishnamurthy et al. (2014) Qingsong Lin Assistant Professor Lin Qingsong 2014-11-18
PXD001354 Hepatic proteome analysis of Atlantic salmon (Salmo salar) after exposure to environmental concentrations of human pharmaceuticals PRIDE Salmo sp. 4800 Proteomics Analyzer Hampel et al. (2014) Miriam Hampel Jesus Forja 2014-11-18
PXD001125 Maize seedling root cells LC-MS/MS PRIDE Zea mays Q Exactive Yu et al. (2014) Feng Yu Fazhan Qiu 2014-11-18
PXD001414 Tomato nuclear proteome reveals the involvement of specific E2 ubiquitin-conjugating enzymes in fruit ripening PRIDE Solanum lycopersicum TripleTOF 5600 Wang et al. (2014) Guozheng Qin gzqin@ibcas.ac.cn 2014-11-18
PXD000627 Proteomic analysis of Pichia pastoris GS115 PRIDE Komagataella pastoris (strain GS115 / ATCC 20864) (Pichia pastoris) LTQ Orbitrap Velos Renuse et al. (2014) Akhilesh Pandey 2014-11-18
PXD001375 Proteomic analysis of gliosomes from mouse brain for investigation of glial membrane proteins PRIDE Mus musculus TripleTOF 5600 Carney et al. (2014) Pim van Nierop Dr. Mark H.G. Verheijen 2014-11-17
PXD001430 Proteomic analysis of urinary exosomes in cystinuria patients PRIDE Homo sapiens LTQ Orbitrap Velos Bourderioux et al. (2014) Chiara guerrera Ida Chiara Guerrera 2014-11-17
PXD000898 Quantitative Proteomics Reveals the Role of Protein Phosphorylation in Initial Changes of Soybean Root Tip under Flooding Stress PRIDE Glycine max (Glycine hispida) LTQ Orbitrap Yin, Sakata & Komatsu (2014) xiaojian Yin Setsuko Komatsu 2014-11-13
PXD000922 Mycoplasma gallisepticum S6 PRIDE Mycoplasma gallisepticum S6 TripleTOF 5600 Mazin et al. (2014) Ilya Altukhov Govorun Vadim Markovich 2014-11-12
PXD001243 change in hypopharyngeal glands of overwintering bees Proteomics PRIDE Sphingobium chlorophenolicum TripleTOF 5600 Dataset with its publication pending Zhenguo Liu lzhenguo 2014-11-12
PXD001045 Biocathode metaproteomics PRIDE biofilm metagenome QSTAR Wang et al. (2014) Dasha Leary Dasha Leary 2014-11-11
PXD001090 Interactors associated to Sas3-dependent NuA3 histone acetyltransferase complex PRIDE Saccharomyces cerevisiae (Baker's yeast) TripleTOF 5600 10.1016/j.fob.2014.11.001 Luz Valero Mercè Pamblanco Rodríguez 2014-11-10
PXD001089 Interactors associated to Sas3-dependent NuA3 histone acetyltransferase complex PRIDE Saccharomyces cerevisiae (Baker's yeast) QSTAR 10.1016/j.fob.2014.11.001 Luz Valero Mercè Pamblanco Rodríguez 2014-11-10
PXD001203 The Q Exactive HF, a Benchtop Mass Spectrometer with a Pre-filter, High Performance Quadrupole and an Ultra-High Field Orbitrap Analyzer PRIDE Homo sapiens Q Exactive Scheltema et al. (2014) Richard Scheltema Matthias Mann 2014-11-10
PXD001074 BDNF stimulation of protein synthesis in cortical neurons requires the eIF4E kinase Mnk1 PRIDE Mus musculus LTQ Orbitrap Elite Genheden et al. (2015) Harvey Johnston Spiro D. Garbis 2014-11-06
PXD001165 Hendra virus infection of bat (Pteropus alecto) and human cells PRIDE Pteropus alecto (Black flying fox), Homo sapiens , Hendra virus (isolate Horse/Autralia/Hendra/1994) LTQ Orbitrap Velos Dataset with its publication pending David Matthews David A Matthews 2014-11-05
PXD001423 Comprehensive Assessment of Proteins Regulated by Dexamethasone Reveals Novel Effects in Primary Human Peripheral Blood Mononuclear Cells - secreted proteins of dexamethasone-treated inflammatory stimulated cells PRIDE Homo sapiens Q Exactive Bileck et al. (2014) Christopher Gerner Christopher Gerner 2014-11-04
PXD001422 Comprehensive Assessment of Proteins Regulated by Dexamethasone Reveals Novel Effects in Primary Human Peripheral Blood Mononuclear Cells - cytoplasmic proteins of dexamethasone-treated inflammatory stimulated cells PRIDE Homo sapiens Q Exactive Bileck et al. (2014) Christopher Gerner Christopher Gerner 2014-11-04
PXD001421 Comprehensive Assessment of Proteins Regulated by Dexamethasone Reveals Novel Effects in Primary Human Peripheral Blood Mononuclear Cells - nuclear proteins of dexamethasone-treated inflammatory stimulated cells PRIDE Homo sapiens Q Exactive Bileck et al. (2014) Christopher Gerner Christopher Gerner 2014-11-04
PXD001420 Comprehensive Assessment of Proteins Regulated by Dexamethasone Reveals Novel Effects in Primary Human Peripheral Blood Mononuclear Cells - secreted proteins of inflammatory stimulated cells PRIDE Homo sapiens Q Exactive Bileck et al. (2014) Christopher Gerner Christopher Gerner 2014-11-04
PXD001419 Comprehensive Assessment of Proteins Regulated by Dexamethasone Reveals Novel Effects in Primary Human Peripheral Blood Mononuclear Cells - cytoplasmic proteins of inflammatory stimulated cells PRIDE Homo sapiens Q Exactive Bileck et al. (2014) Christopher Gerner Christopher Gerner 2014-11-04
PXD001418 Comprehensive Assessment of Proteins Regulated by Dexamethasone Reveals Novel Effects in Primary Human Peripheral Blood Mononuclear Cells - nuclear proteins of inflammatory stimulated cells PRIDE Homo sapiens Q Exactive Bileck et al. (2014) Christopher Gerner Christopher Gerner 2014-11-04
PXD001417 Comprehensive Assessment of Proteins Regulated by Dexamethasone Reveals Novel Effects in Primary Human Peripheral Blood Mononuclear Cells - secreted proteins of untreated cells PRIDE Homo sapiens Q Exactive Bileck et al. (2014) Christopher Gerner Christopher Gerner 2014-11-04
PXD001416 Comprehensive Assessment of Proteins Regulated by Dexamethasone Reveals Novel Effects in Primary Human Peripheral Blood Mononuclear Cells - Cytoplasmic Proteins of Untreated Cells PRIDE Homo sapiens Q Exactive Bileck et al. (2014) Christopher Gerner Christopher Gerner 2014-11-04
PXD001415 Comprehensive Assessment of Proteins Regulated by Dexamethasone Reveals Novel Effects in Primary Human Peripheral Blood Mononuclear Cells - nuclear proteins of untreated cells PRIDE Homo sapiens Q Exactive Bileck et al. (2014) Christopher Gerner Christopher Gerner 2014-11-04
PXD000971 Proteomic Analysis of Livers from Fat-fed Mice Deficient in Either PKCδ or PKCɛ PRIDE Mus musculus LTQ Orbitrap Velos Liao et al. (2014) Bing Qing Liao Carsten Schmitz-Peiffer 2014-11-04
PXD001267 Male infertility G. fossarum PRIDE Gammarus fossarum LTQ Orbitrap Elite Dataset with its publication pending Jean ARMENGAUD Jean Armengaud 2014-11-04
PXD001257 Shotgun ecotoxicoproteomics of Daphnia pulex: biochemical effects of the anticancer drug tamoxifen PRIDE Daphnia pulex (Water flea) LTQ Orbitrap Borgatta et al. (2014) Patrice Waridel Manfredo Quadroni 2014-10-31
PXD001305 Rapid and Deep Proteomes by Faster Sequencing on a Benchtop Quadrupole Ultra-High-Field Orbitrap Mass Spectrometer PRIDE Homo sapiens Q Exactive HF; Q Exactive Kelstrup et al. (2014) Christian Kelstrup Jesper V. Olsen 2014-10-31
PXD000964 MS approach assessment and Mad1 phosphopeptide analysis PRIDE Homo sapiens LTQ Orbitrap Velos Bauer et al. (2014) Alexander Schmidt Alexander Schmidt 2014-10-31
PXD001387 Proteomics of Skin Proteins in Psoriasis PRIDE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Kathleen Lundberg Mark R. Chance 2014-10-30
PXD001217 Snake venom serine proteinases specificity mapping by proteomic identification of cleavage sites PRIDE Bothrops jararaca (Bothrops jajaraca) LTQ Orbitrap Zelanis et al. (2015) Andre Zelanis Solange M. T. Serrano 2014-10-30
PXD001108 Listeria monocytogenes phosphoproteomics PRIDE Listeria monocytogenes EGD-e LTQ Orbitrap Dataset with its publication pending Sandeep Misra Celine Henry 2014-10-29
PXD001260 Identification of miR-145 targets using SILAC PRIDE Homo sapiens LTQ Orbitrap Velos Huang et al. (2014) Akhilesh Pandey Akhilesh Pandey 2014-10-28
PXD000473 Alpha-1-Antitrypsin: A Novel Human High Temperature Requirement Protease A1 (HTRA1) Substrate in Human Placental Tissue PRIDE Homo sapiens LTQ FT Frochaux et al. (2014) Violette Frochaux 2014-10-24
PXD000906 Deciphering changes to human platelet proteome and degradome during storage before transfusion PRIDE Homo sapiens QSTAR Prudova et al. (2014) Anna Prudova Christopher Mark Overall 2014-10-24
PXD001062 Substrate Trapping Proteomics Reveals Targets of the βTrCP2/FBXW11 Ubiquitin Ligase PRIDE Homo sapiens LTQ Orbitrap Velos; LTQ Orbitrap Elite Kim et al. (2014) Dennis Goldfarb Michael Ben Major 2014-10-24
PXD001162 Analysis low level Hsp90 proteome by SILAC in yeast PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Elite Gopinath et al. (2014) Scott Schuyler Scott C. Schuyler 2014-10-24
PXD001403 Proteome profiling of ovarian cancer and cirrhosis ascites PRIDE Homo sapiens TripleTOF 5600 Shender et al. (2014) Georgij Arapidi Georgij Arapidi 2014-10-23
PXD001402 Proteome profiling of microvesicles, exosomes and supernatant from SKOV3 PRIDE Homo sapiens TripleTOF 5600 Shender et al. (2014) Georgij Arapidi Georgij Arapidi 2014-10-23
PXD001404 Off-line high pH reversed-phase fractionation for in-depth phosphoproteomics PRIDE Mus musculus Q Exactive Batth, Francavilla & Olsen (2014) Tanveer Batth Jesper V. Olsen 2014-10-23
PXD000499 miRNA-mediated regulation of hBC cell proteome PRIDE Homo sapiens QSTAR Nassa et al. (2014) Tuula Nyman 2014-10-23
PXD000788 Human EGFR AP-MS project PRIDE Homo sapiens Q Exactive Tong, Taylor & Moran (2014) Jiefei Tong Mike Moran 2014-10-23
PXD001342 Soluble lymph node proteome during anthrax infection in mice PRIDE Mus musculus LTQ Orbitrap Popova et al. (2014) Serguei Popov Serguei Popov 2014-10-21
PXD001252 Arabidopsis thaliana proteomics/phosphoproteomics PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Dataset with its publication pending Ines Lassowskat Justin Lee 2014-10-20
PXD001200 Hela-S3 ATPome PRIDE Homo sapiens Q Exactive Adachi et al. (2014) Jun Adachi Jun Adachi 2014-10-20
PXD001390 Re-analysis of: ‘CSF proteome mapping: Human cerebrospinal fluid LC-MS/MS, Part 2’ (PXD000652) to demonstrate the ProteoAnnotator software for mapping identifications to Ensembl genomes PRIDE Homo sapiens LTQ Orbitrap Ghali et al. (2014) Fawaz Ghali Andy Jones 2014-10-20
PXD001042 Proteogenomic analysis of Toxoplasma gondii (comparing genome releases 6 and 10) to demonstrate the performance of the ProteoAnnotator software PRIDE Toxoplasma gondii ME49 LTQ Orbitrap Ghali et al. (2014) Fawaz Ghali Andrew R. Jones 2014-10-20
PXD000867 Cell type-resolved quantitative proteomics of mouse liver PRIDE Mus musculus Q Exactive Azimifar et al. (2014) Mario Oroshi Matthias Mann 2014-10-20
PXD001398 Accessibilome of Human Glioblastoma PRIDE Homo sapiens , Mus musculus Bruker Daltonics esquire series Turtoi et al. (2014) Andrei Turtoi Vincent Castronovo 2014-10-17
PXD001373 Major Proteomic Changes Associated with Amyloid Induced Biofilm Formation in Pseudomonas aeruginosa PAO1 PRIDE Pseudomonas aeruginosa PAO1 Q Exactive Herbst et al. (2014) Florian-Alexander Herbst Per Halkjær Nielsen 2014-10-17
PXD000078 'Life and death' of extracytoplasmic proteins PRIDE Bacillus subtilis subsp. subtilis str. 168 LTQ Orbitrap Krishnappa et al. (2013) Andreas Otto 2014-10-15
PXD001281 Proteome-wide identification of SUMO2 modification sites PRIDE Homo sapiens Q Exactive Tammsalu et al. (2014) Triin Tammsalu Ronald T. Hay 2014-10-15
PXD001094 Phosphoproteomics study of N-terminal tyrosine sites of SLP-76 PRIDE Homo sapiens LTQ Orbitrap Velos Ji, Ding & Salomon (2015) QINQIN JI Arthur Salomon 2014-10-15
PXD001033 in-depth phosphoproteomic profiling of mouse microglia BV-2 cell line PRIDE Mus musculus Q Exactive Han et al. (2014) Dohyun Han Dohyun Han 2014-10-15
PXD000452 Proteomic analysis in Giardia duodenalis yields insights into strain virulence and antigenic variation PRIDE Giardia intestinalis assemblage A LTQ Dataset with its publication pending Samantha Emery 2014-10-14
PXD000576 Proteogenomics of Gammarus fossarum PRIDE Gammarus fossarum LTQ Orbitrap Trapp et al. (2014) Jean ARMENGAUD 2014-10-13
PXD001084 Label-free LC-MSe in tissue and serum reveals protein networks underlying differences between benign and malignant serous ovarian tumors PRIDE Homo sapiens Synapt G2 MS Wegdam et al. (2014) Gertjan Kramer Johannes M.F.G. Aerts 2014-10-13
PXD000877 In-depth proteomic analysis of carp (Cyprinus carpio L) spermatozoa PRIDE Cyprinus carpio (Common carp) LTQ Dietrich et al. (2014) Mariola Dietrich Mariola A. Dietrich 2014-10-13
PXD000961 Integrated metagenomic and metaproteomic analyses of marine biofilm communities PRIDE biofilm metagenome QSTAR Leary et al. (2014) Dasha Leary Dasha Leary 2014-10-13
PXD000767 Phosphoproteome of mouse testis PRIDE Mus musculus LTQ Orbitrap Qi et al. (2014) zhou tao Jiahao Sha 2014-10-10
PXD001339 Huh-7 exosomes and HBV PRIDE Homo sapiens Q Exactive Zhao et al. (2014) Jing Liu Youhua Xie 2014-10-09
PXD001382 ancient_maize_MS MassIVE Zea mays subsp. mays LTQ Dataset with its publication pending Sunghee Woo Lisandra Zepeda 2014-10-06
PXD001034 Biomarkers for Cervical Cancer. iTRAQ Discovery. PRIDE Homo sapiens Agilent instrument model Boichenko et al. (2014) Alexander Boichenko Rainer Bischoff 2014-10-06
PXD001055 Biomarkers for cervical cancer. Verfification. PRIDE Homo sapiens Agilent instrument model Boichenko et al. (2014) Alexander Boichenko Rainer Bischoff 2014-10-06
PXD001380 Specific Non-Gluten Proteins of Wheat are Novel Target Antigens in Celiac Disease Humoral Response MassIVE Triticum aestivum, Specific Non-Gluten Proteins of Wheat are Novel Target Antigens in Celiac Disease Humoral Response LTQ Orbitrap Elite Dataset with its publication pending William Vensel Armin Alaedini, Columbia University Medical Center; 1130 Saint Nicholas Ave., 9th Floor; New York, NY 10032; Phone: 212-851-4582; Email: aa819@columbia.edu. 2014-10-05
PXD000554 Convergence of Ubiquitylation and Phosphorylation Signaling in Rapamycin-Treated Yeast Cells PRIDE Saccharomyces cerevisiae (Baker's yeast) Q Exactive Iesmantavicius, Weinert & Choudhary (2014) Brian Weinert Chunaram Choudhary 2014-10-03
PXD001076 Quantitative phosphoproteomics of cytotoxic T cells to reveal Protein Kinase D 2 regulated networks PRIDE Mus musculus LTQ Orbitrap Velos Navarro et al. (2014) Jens Hukelmann Doreen Ann Cantrell 2014-10-03
PXD001216 Analysis of differential expression patterns of mRNA and protein during cold- and de-acclimation in Arabidopsis PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap XL Nakaminami et al. (2014) Kentaro Nakaminami Motoaki Seki 2014-10-02
PXD000705 Extending proteome coverage through an on-line 2D SCX-RP ultra-high pressure system PRIDE Homo sapiens Q Exactive Dataset with its publication pending Fabio Marino Albert J.R. Heck 2014-09-30
PXD001226 Protein deacetylation affects acetate metabolism, motility and acid stress response in Escherichia coli PRIDE Escherichia coli Q Exactive; LTQ Orbitrap Velos; LTQ Orbitrap Elite Castaño-Cerezo et al. (2014) Harm Post Manuel Cánovas 2014-09-30
PXD000786 BMP1/Tolloid-like substrates by iTRAQ degradomics PRIDE Homo sapiens QSTAR Delolme et al. (2014) Frederic DELOLME Frederic Delolme 2014-09-29
PXD001266 A transcriptional regulator Sll0794 regulates tolerance to biofuel ethanol in photosynthetic Synechocystis sp. PCC 6803 PRIDE Synechocystis sp. PCC 6803 TripleTOF 5600 Song et al. (2014) Guangsheng Pei Weiwen Zhang 2014-09-26
PXD000763 Identification of inositol 1,4,5-trisphosphate-binding proteins by heparin-agarose affinity purification and LTQ ORBITRAP MS in Oryza sativa PRIDE Rice(O. sativa) LTQ Orbitrap Nie et al. (2014) Shengcheng Han Shengcheng Han 2014-09-25
PXD000886 Bacillus cereus proteomics PRIDE Bacillus cereus (strain ATCC 14579 / DSM 31) LTQ Orbitrap Laouami et al. (2014) Jean ARMENGAUD Jean ARMENGAUD 2014-09-25
PXD001175 Proteomic dissection of nanoparticle-containing vesicles reveals a major role for a macropinocytic-like uptake mechanism and multivesicular bodies during intracellular nanoparticle trafficking PRIDE Homo sapiens Synapt G2-S HDMS Hofmann et al. (2014) Stefan Tenzer Stefan Tenzer 2014-09-25
PXD000590 In-depth protein profiling of mouse hippocampal postsynaptic density using data-independent acquisition proteomics PRIDE Mus musculus Synapt MS Distler et al. (2014) Ute Distler Ute Distler 2014-09-25
PXD001129 Dissection of IL-2 and IL-15 signaling pathways PRIDE Homo sapiens Q Exactive Osinalde et al. (2014) Nerea Osinalde Nerea Osinalde 2014-09-23
PXD001328 Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts PRIDE Homo sapiens LTQ Orbitrap Velos Groessl et al. (2014) Christopher Gerner Christopher Gerner 2014-09-23
PXD001327 Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts PRIDE Homo sapiens Q Exactive Groessl et al. (2014) Christopher Gerner Christopher Gerner 2014-09-23
PXD001326 Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts PRIDE Homo sapiens Q Exactive Groessl et al. (2014) Christopher Gerner Christopher Gerner 2014-09-23
PXD001325 Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts PRIDE Homo sapiens Q Exactive Groessl et al. (2014) Christopher Gerner Christopher Gerner 2014-09-23
PXD001324 Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts PRIDE Homo sapiens Q Exactive Groessl et al. (2014) Christopher Gerner Christopher Gerner 2014-09-23
PXD001323 Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts PRIDE Homo sapiens LTQ Orbitrap Velos Groessl et al. (2014) Christopher Gerner Christopher Gerner 2014-09-23
PXD001311 Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts PRIDE Homo sapiens LTQ Orbitrap Velos Groessl et al. (2014) Christopher Gerner Christopher Gerner 2014-09-23
PXD001022 Proteomic analyses of embryogenic tissues in Picea balfouriana treated by 6-BAP PRIDE Picea likiangensis var. rubescens TripleTOF 5600 Li, Zhang & Wang (2014) Qingfen Li Junhui Wang 2014-09-23
PXD001063 Proteomic analysis of cAMP-mediated signaling during differentiation of 3T3-L1 preadipocytes PRIDE Mus musculus 4800 Proteomics Analyzer Borkowski et al. (2014) Kamil Borkowski Karsten Kristiansen 2014-09-22
PXD000892 Reproducible Automated Phosphopeptide Enrichment using Magnetic TiO2 and Ti-IMAC PRIDE Mus musculus LTQ Orbitrap Velos; Q Exactive Tape et al. (2014) Christopher Tape Claus Jørgensen 2014-09-22
PXD001253 iTRAQ proteomics of non fibrotic carcinoma on Human Liver PRIDE Homo sapiens LTQ Orbitrap Negroni et al. (2014) Luc NEGRONI Eric Chevet 2014-09-18
PXD000279 MaxLFQ label-free quantification algorithm benchmark datasets PRIDE Escherichia coli, Homo sapiens LTQ Orbitrap; Q Exactive Cox et al. (2014) Mario Oroshi 2014-09-17
PXD000661 A ‘proteomic ruler’ for protein copy number and concentration estimation without spike-in standards PRIDE Homo sapiens , Mus musculus LTQ Orbitrap; LTQ Orbitrap Velos; Q Exactive Wiśniewski et al. (2014) Mario Oroshi 2014-09-16
PXD000605 The human plasma proteome before and after remote ischemic preconditioning PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Helgeland et al. (2014) Marc Vaudel 2014-09-16
PXD000333 Human Primary T-cells Phospoproteomic WorkFlow PRIDE Homo sapiens LTQ Orbitrap Gallardo et al. (2014) Óscar Gallardo Román 2014-09-16
PXD001006 CPTAC System Suitability (CompRef) Study: Proteome, VU PRIDE Homo sapiens , Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Nathan Edwards Daniel C. Liebler, Ph.D. 2014-09-16
PXD001000 CPTAC System Suitability (CompRef) Study: Phosphoproteome, PNNL PRIDE Homo sapiens , Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Nathan Edwards Richard D. Smith, Ph.D. 2014-09-16
PXD000966 CPTAC System Suitability (CompRef) Study: Proteome, PNNL PRIDE Homo sapiens , Mus musculus LTQ Orbitrap Velos Dataset with its publication pending Nathan Edwards Richard D. Smith, Ph.D. 2014-09-16
PXD001310 Polysome pellet digests PRIDE Homo sapiens Agilent instrument model Dataset with its publication pending Eric Fang Isabel Zaror 2014-09-16
PXD001127 C-terminal Domain Small Phosphatase 1 and MAP kinase reciprocally control REST stability and neuronal differentiation. PRIDE Rattus norvegicus LTQ Nesti et al. (2014) Phillip Wilmarth Gail Mandel 2014-09-15
PXD001318 GNPS Bacteria CB0028 associated to Acromyrmex sp. MassIVE Bacteria CB0028 instrument model: Thermo Finnigan LTQ-FT-ICR Dataset with its publication pending Cristopher Boya Marcelino Gutierrez / Pieter Dorrestein 2014-09-12
PXD001317 GNPS Interaction between bacteria CB0028 and Escovopsis sp. (CBacro424) MassIVE Bacteria CB0028 and Escovopsis sp. instrument model: Thermo Finnigan LTQ-FT-ICR Dataset with its publication pending Cristopher Boya Marcelino Gutierrez / Pieter Dorrestein / Hermogenes Fernandez-Marin 2014-09-12
PXD001316 GNPS Bacteria CB0028 associated to Acromyrmex sp. MassIVE Bacteria CB0028 associated to Acromyrmex sp. instrument model: Thermo Finnigan LTQ-FT-ICR Dataset with its publication pending Cristopher Boya Marcelino Gutierrez / Pieter Dorrestein 2014-09-12
PXD001315 GNPS Escovopsis sp. (CBacro424) associated to nest of Acromyrmex sp. MassIVE Escovopsis sp. instrument model: Thermo Finnigan LTQ-FT-ICR Dataset with its publication pending Cristopher Boya Marcelino Gutierrez / Pieter Dorrestein 2014-09-12
PXD001314 GNPS Streptomyces (CBR38) associated to Acromyrmex sp. MassIVE Streptomyces instrument model: Thermo Finnigan LTQ-FT-ICR Dataset with its publication pending Cristopher Boya Marcelino Gutierrez / Pieter Dorrestein 2014-09-12
PXD001313 GNPS Streptomyces sp.(CBR53) associated to Acromyrmex sp. Direct infusion MassIVE Streptomyces sp. micrOTOF-Q III Dataset with its publication pending Cristopher Boya Gutierrez/Dorrestein 2014-09-12
PXD001312 GNPS Octocoral-Associated Bacteria from Panama II MassIVE Bacteria associated to octocorals collected in Panama LTQ FT; LTQ Orbitrap Dataset with its publication pending Daniel Torres-Menoza Pieter C. Dorrestein / Marcelino Gutierrez 2014-09-12
PXD000872 Forty-four novel protein-coding loci discovered using a PIT approach in rat male germ cells PRIDE Rattus norvegicus LTQ Orbitrap XL Chocu et al. (2014) Sophie Chocu Sophie Chocu 2014-09-12
PXD001248 Determination of Supplier-To-Supplier and Lot-To-Lot Variability in Glycation of Recombinant Human Serum Albumin Expressed in Oryza sativa PRIDE Homo sapiens Synapt MS Frahm et al. (2014) Marybeth Creskey Michael J.W. Johnston 2014-09-12
PXD001309 GNPS Octocoral-Associated Bacteria from Panama MassIVE Bacteria associated to Octocorals collected in Panama LTQ FT; LTQ Orbitrap Dataset with its publication pending Daniel Torres-Menoza Pieter C. Dorrestein / Marcelino Gutierrez 2014-09-11
PXD001308 Raj_nSR100_interactions_P36_V21_P105_V17 MassIVE Homo sapiens, Mus musculus LTQ; TripleTOF 5600 0 Gingras Lab Anne-Claude Gingras 2014-09-11
PXD001080 Entamoeba histolytica splicing/mRNP proteome PRIDE Entamoeba histolytica LTQ Orbitrap Valdés et al. (2014) Robert Winkler Dr. Jesus Valdes Flores 2014-09-11
PXD001304 Trichoderma RUT C-30 secretome after growth on different cellulosic substrates PRIDE Trichoderma reesei RUT C-30 Q Exactive Peciulyte et al. (2014) George Anasontzis Lisbeth Olsson 2014-09-11
PXD001135 Relative protein quantification in mouse hippocampal synaptosomes during aging series PRIDE Mus musculus TOF/TOF 5800 Vegh et al. (2014) Pim van Nierop Dr. Ronald van Kesteren 2014-09-10
PXD001292 Comprehensive phosphoproteome analysis unravels the core signaling network that initiates the earliest synapse pathology in preclinical Alzheimer's disease brain PRIDE Mus musculus TripleTOF 5600 Tagawa et al. (2014) Hidenori Homma Hitoshi Okazawa 2014-09-10
PXD001182 Metabolic changes in adaptation to biofilm growth by streptococcus pneumoniae PRIDE Streptococcus pneumoniae SP14-BS69 Q-Tof ultima Allan et al. (2014) Paul Skipp Dr Paul Skipp 2014-09-10
PXD000778 Mouse SCN in LC-MSMS PRIDE Mus musculus LTQ Orbitrap Dataset with its publication pending kerwin chiang Daniel Figeys 2014-09-10
PXD000666 Deep proteomic evaluation of primary and cell line motoneuron disease models delineates major differences in neuronal characteristics PRIDE Mus musculus Q Exactive Hornburg et al. (2014) Mario Oroshi Matthias Mann 2014-09-09
PXD001199 Systematic identification of hypothetical bacteriophage proteins targeting key protein complexes of Pseudomonas aeruginosa PRIDE Pseudomonas aeruginosa PAO1 LTQ; LTQ Orbitrap Velos Van den Bossche et al. (2014) Jean-Paul Noben Prof Rob Lavigne 2014-09-09
PXD000935 A normative study of the synovial fluid proteome from healthy porcine knee joints PRIDE Sus scrofa domesticus (domestic pig), Homo sapiens Q Exactive; TripleTOF 5600 Bennike et al. (2014) Tue Bennike Hanno Steen 2014-09-09
PXD001295 GNPS - Streptomyces cattleya media screening MassIVE Streptomyces cattleya NRRL 8057 = DSM 46488 6520 Quadrupole Time-of-Flight LC/MS Dataset with its publication pending Ellis O'Neill Bradley Moore 2014-09-08
PXD001294 GNPS - Streptomyces CNB091, CNS615 and CNT302 on 8 media MassIVE Streptomyces sp. CNB091, Streptomyces sp. CNS615, Streptomyces sp. CNT302 6520 Quadrupole Time-of-Flight LC/MS Dataset with its publication pending Ellis O'Neill Bradley Moore 2014-09-08
PXD001288 GNPS - Streptomyces on A1, MS and R5 agar MassIVE Streptomyces sp. CNB091, Streptomyces sp. CNT302, Streptomyces sp. TAA204, Streptomyces sp. CNY228, Streptomyces sp. CNY243, Streptomyces sp. CNT372, Streptomyces sp. TAA486, Streptomyces sp. TAA040, Streptomyces sp. CNS335, Streptomyces sp. CNT318, Strep 6520 Quadrupole Time-of-Flight LC/MS Dataset with its publication pending Ellis O'Neill Bradley Moore 2014-09-04
PXD001287 Gonzalez et al. MCP 2014 (PSM peptides); Cell Chemisty & Biology 2014 (N-AgrD Peptides) MassIVE Staphylococcus aureus strain TCH1516 USA300 LTQ Dataset with its publication pending Max Cruesemann David Gonzalez, Ph.D 2014-09-04
PXD001054 Redox Proteome of Skeletal Muscle PRIDE Mus musculus Q Exactive McDonagh et al. (2014) Brian McDonagh Brian McDonagh 2014-09-04
PXD001061 Uncovering Global SUMOylation Signaling Networks in a Site-Specific Manner PRIDE Homo sapiens Q Exactive Hendriks et al. (2014) Ivo Hendriks Alfred C.O. Vertegaal 2014-09-04
PXD000294 Novel insights into the metabolic and biochemical underpinnings assisting dry-season survival in female malaria mosquitoes of the Anopheles gambiae complex PRIDE Anopheles gambiae str. PEST AB SCIEX TOF/TOF T2D file Hidalgo et al. (2014) Hidalgo Kevin 2014-09-03
PXD001277 Mouse, Hippocampus, LC-MSMS PRIDE Mus musculus LTQ Orbitrap English et al. (2013) Caitriona Scaife David R. Cotter 2014-09-02
PXD000888 Anoxia in Ralstonia eutropha H16 PRIDE Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (Ralstonia eutropha) LTQ Orbitrap Kohlmann et al. (2014) Andreas Otto Andreas Otto 2014-09-01
PXD001251 Identification of long-lived proteins retained in cells undergoing repeated asymmetric divisions PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Thayer et al. (2014) Nathaniel Thayer Daniel E. Gottschling 2014-09-01
PXD001003 Comparative analysis of the adaptation of Staphylococcus aureus to internalization by different types of human non-professional phagocytic host cells PRIDE Staphylococcus aureus Q Exactive Surmann et al. (2014) Maren Depke Frank Schmidt 2014-09-01
PXD001174 Un-conditioned commercial embryo culture media contain a large variety of non-declared proteins: a comprehensive proteomics analysis PRIDE Homo sapiens TripleTOF 5600 Dyrlund et al. (2014) Thomas F. Dyrlund Jan J. Enghild 2014-09-01
PXD001118 Histione HCD and CID datasets for evaluation of search engines PRIDE Homo sapiens LTQ Orbitrap Velos Yuan et al. (2014) Zuo-Fei Yuan Benjamin A. Garcia 2014-09-01
PXD000268 AKT isoform specific signaling PRIDE Mus musculus LTQ Orbitrap Reinartz et al. (2014) Michael Reinartz 2014-08-28
PXD001258 Correction To - Confetti: A Multi-protease Map of the HeLa Proteome for Comprehensive Proteomics PRIDE Homo sapiens Q Exactive; LTQ Orbitrap Elite Guo et al. (2014) David Trudgian Hamid Mirzaei 2014-08-28
PXD000874 Cardiac myofilament isoforms PRIDE Rattus norvegicus LTQ Orbitrap Kooij et al. (2014) Vidya Venkatraman Dr. Jennifer E Van Eyk 2014-08-28
PXD001268 Preterm birth CVF proteomics discovery PRIDE Homo sapiens LTQ Orbitrap Parry et al. (2014) Suhong Zhang Ian A Blair 2014-08-28
PXD000804 Exploring potential virulence regulators in Paracoccidioides brasiliensis isolates of varying virulence through quantitative proteomics PRIDE Paracoccidioides brasiliensis (strain Pb18) LTQ Orbitrap Velos Castilho et al. (2014) Alexandre Keiji Tashima Alexandre Keiji Tashima 2014-08-28
PXD000552 Deep and precise quantification of the mouse synaptosomal proteome reveals substantial remodeling during postnatal maturation PRIDE Mus musculus LTQ Orbitrap Velos Moczulska et al. (2014) Michael Schutzbier 2014-08-28
PXD001018 Divergent Cysteines in FOXO3 and FOXO4 Mediate Paralog-Specific Redox Signaling PRIDE Homo sapiens LTQ Orbitrap Velos Putker et al. (2014) Harmjan Vos Tobias Dansen 2014-08-26
PXD001040 Divergent Cysteines in FOXO3 and FOXO4 Mediate Paralog-Specific Redox Signaling PRIDE Homo sapiens LTQ Orbitrap Velos Putker et al. (2014) Harmjan Vos Tobias Dansen 2014-08-26
PXD000765 Label-free mass spectrometry-based profiling of urinary proteins and metabolites for non-invasive diagnosis of idiopathic nephrotic syndrome in children PRIDE Homo sapiens Synapt MS Sedic et al. (2014) Hans Vissers Sandra Kraljevic Pavelic 2014-08-26
PXD001041 Divergent Cysteines in FOXO3 and FOXO4 Mediate Paralog-Specific Redox Signaling PRIDE Homo sapiens LTQ Orbitrap Velos Putker et al. (2014) Harmjan Vos Tobias Dansen 2014-08-26
PXD001254 Qualitative and quantitative analysis of chicken semen PRIDE Gallus gallus LTQ Orbitrap Labas et al. (2014) Labas Valerie Valérie Labas 2014-08-22
PXD000693 LC-MS/MS to identify proteins present in apoplastic fluid extracted from WT and ca1ca4 mutant Arabidopsis plants grown under low and high CO2 conditions PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Engineer et al. (2014) Jeff Anderson Scott C Peck 2014-08-22
PXD000692 LC-MS/MS of apoplast proteins from Arabidopsis wild type and ca1ca4 mutant plants PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Engineer et al. (2014) Jeff Anderson Scott C Peck 2014-08-22
PXD000956 Carbonic anhydrases, EPF2 peptide and a novel protease, CRSP, mediate CO2 control of stomatal development PRIDE Arabidopsis thaliana (Mouse-ear cress) TripleTOF 5600 Engineer et al. (2014) Majid Ghassemian Majid Ghassemian 2014-08-22
PXD000572 Hematopoietic Stem Cell (HSC) and Multipotent Progenitor (MPP1) quantitative proteomics PRIDE Mus musculus LTQ Orbitrap Velos Cabezas-Wallscheid et al. (2014) Jenny Hansson 2014-08-21
PXD000467 Endogenous S-nitrosoproteome in colorectal cancer patients PRIDE Homo sapiens Q-Tof Premier Chen et al. (2014) Yi-Ju Chen 2014-08-20
PXD000380 KMH2 control treatment PRIDE Homo sapiens Q Exactive Carvalho et al. (2014) Rune Matthiesen 2014-08-20
PXD001235 Systematic evaluation of quantotypic peptides for targeted analysis of the human kinome (Worboys, et al.) PeptideAtlas Homo sapiens TSQ Vantage Worboys et al. (2014) Jonathan Worboys Claus Jorgensen 2014-08-19
PXD001234 Biomarkers for cervical cancer. Validation. (Alexander, et al. submitted) PeptideAtlas Homo sapiens 6410 Triple Quadrupole LC/MS no publication Alexander Boichenko Rainer Bischoff 2014-08-19
PXD001233 SRM analysis of breast tumor samples (Waldemarson, et al) PeptideAtlas Homo sapiens TSQ Vantage Waldemarson, et al. (submitted) Sofia Waldemarson Peter James 2014-08-19
PXD001232 Automated Phosphopeptide Enrichment SRM Analysis (Tape, et al.) PeptideAtlas Homo sapiens TSQ Vantage no publication Christopher Tape Claus Jorgensen 2014-08-19
PXD001231 Clinical validation of potential urinary biomarkers of UPJ obstruction in newborns (Lacroix et al.) PeptideAtlas Homo sapiens QTRAP 5500 Lacroix, et al. (submitted) Anne Gonzalez de Peredo B. Monsarrat 2014-08-18
PXD001230 Effects of EGFR, EGFRvIII, PTEN on invasion-promoting proteins secreted by glioblastoma cells (Sangar et al. 2014) PeptideAtlas Homo sapiens 6490 Triple Quadrupole LC/MS Sangar et al. (2014) Vineet Sangar Dr Nathan D Price 2014-08-18
PXD001229 Cell-Specific Labeling Enzymes For Analysis of Cell-Cell Communication in Continuous Co-Culture (Tape et al. 2014) PeptideAtlas Mycobacterium tuberculosis TSQ Vantage Tape et al. (2014) Christopher Tape Claus Jorgensen 2014-08-18
PXD001228 DNA-repair enzymes measure before and after gamma-irradiation of breast cancer-derived cell lines (James, et al.) PeptideAtlas Homo sapiens TSQ Vantage no publication Paolo Cifani Peter James 2014-08-18
PXD000992 Chicken uterine fluid protein description and quantification PRIDE Gallus gallus LTQ Orbitrap Velos Dataset with its publication pending G HARICHAUX Joel Gautron 2014-08-18
PXD000822 Ram seminal plasma PRIDE Ovis aries LTQ Orbitrap Velos Soleilhavoup et al. (2014) G HARICHAUX Xavier Druart 2014-08-18
PXD001163 Proteomic analysis of the Plasmodium male gamete reveals a key role for glycolysis in flagellar motility PRIDE Plasmodium sp. pBT9 LTQ Orbitrap Talman et al. (2014) Ceereena Ubaida Mohien Arthur M. Talman 2014-08-18
PXD000965 N-glycosylation site occupancy in human prostaglandin H synthases expressed in Pichia pastoris PRIDE Homo sapiens , Komagataella pastoris (Pichia pastoris) LTQ Orbitrap; Q Exactive Kukk, Kasvandik & Samel (2014) Sergo Kasvandik Nigulas Samel 2014-08-18
PXD001227 HPP Chr18: depleted plasma and HepG2 cells, SRM BIO (Ponomarenko et al. 2014) PeptideAtlas Homo sapiens 6490 Triple Quadrupole LC/MS Ponomarenko et al. (2014) Aleksey Filimonov Alexander Archakov 2014-08-15
PXD000649 HPP Chr18: depleted plasma and HepG2 cells, SRM QC (Ponomarenko et al. 2014) PeptideAtlas Homo sapiens 6490 Triple Quadrupole LC/MS Ponomarenko et al. (2014) Aleksey Filimonov Alexander Archakov 2014-08-15
PXD000167 HPP Chr18: depleted plasma and HepG2 cells, SRM scouting (Ponomarenko et al. 2014) PeptideAtlas Homo sapiens 6490 Triple Quadrupole LC/MS Ponomarenko et al. (2014) Aleksey Filimonov Alexander Archakov 2014-08-15
PXD000103 Label-sparse (Chang et al. 2014) PeptideAtlas Mus musculus 4000 QTRAP Chang et al. (2014) Eduard Sabido Olga Vitek 2014-08-15
PXD000311 Analysis of mouse hippocampus membrane proteome by gel-based LC/MS PRIDE Mus musculus instrument model: Thermo Orbitrap Velos Pro Heo et al. (2014) Gert Lubec 2014-08-15
PXD000862 Metaproteomics: Optimization and evaluation of protein extraction from activated sludge PRIDE environmental samples Q Exactive Hansen et al. (2014) Florian-Alexander Herbst Per Halkjær Nielsen 2014-08-15
PXD001220 Characterization of native protein complexes and protein isoform variation using size-fractionation-based quantitative proteomics. PRIDE Homo sapiens LTQ Orbitrap Velos Kirkwood et al. (2013) Vackar Afzal Prof Angus Lamond 2014-08-14
PXD000999 DeMix:efficient identification of co-fragmented peptides PRIDE Homo sapiens Q Exactive Zhang et al. (2014) Bo Zhang Roman A. Zubarev 2014-08-14
PXD001167 Quantitative Histone Acetylation PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Cieniewicz et al. (2014) Alan Tackett Alan J Tackett 2014-08-14
PXD001019 Quantitative Proteomic Analysis Reveals Posttranslational Responses to Aneuploidy in Yeast PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap; LTQ Orbitrap Velos Dephoure et al. (2014) Noah Dephoure Noah Dephoure 2014-08-14
PXD001156 YLR455 affinity purification PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Gilbert et al. (2014) Alan Tackett Alan J. Tackett 2014-08-14
PXD000770 Cellular and proteomics analysis of the endomembrane system from the unicellular Entamoeba histolytica PRIDE Entamoeba histolytica HM-1:IMSS LTQ Orbitrap Velos Perdomo et al. (2014) gagan jhingan Nancy Guillen 2014-08-13
PXD000893 secretome study for human hepatic model during entamoeba invasion PRIDE Homo sapiens , Entamoeba histolytica HM-1:IMSS-A, Bos taurus LTQ Orbitrap Velos Dataset with its publication pending gagan jhingan Nancy Guillen 2014-08-13
PXD001058 Unravelling the proteomic profile of rice meiocytes during early meiosis PRIDE Rice(O. sativa) LTQ Orbitrap Velos Collado-Romero, Alós & Prieto (2014) Enriqueta Alos Pilar Prieto 2014-08-13
PXD000750 Metastatic pancreatic cancer signaling PRIDE Homo sapiens LTQ Orbitrap XL; LTQ Orbitrap Elite Kim et al. (2014) Akhilesh Pandey Min-Sik Kim 2014-08-13
PXD000759 Phosphopeptide enrichment on synthetic libraries and HeLa cells digest PRIDE Homo sapiens LTQ Orbitrap Elite Matheron et al. (2014) Lucrece Matheron Albert Heck 2014-08-11
PXD001009 Deletion of Jagunal homolog 1 (Jagn1) impairs neutrophil mediated responses against Candida albicans PRIDE Mus musculus Q Exactive Dataset with its publication pending Gerhard Duernberger Josef Penninger 2014-08-11
PXD001008 Deletion of Jagunal homolog 1 (Jagn1) impairs neutrophil mediated responses against Candida albicans PRIDE Mus musculus Q Exactive Dataset with its publication pending Gerhard Duernberger Josef Penninger 2014-08-11
PXD000773 SILAC-based Quantitative Proteomic Analysis of Secretome between Activated and Reverted Hepatic Stellate Cells PRIDE Homo sapiens LTQ FT Zhang et al. (2014) Hongyu Zhang Ying Jiang 2014-08-11
PXD000640 Analysis of the interactome of RPS19 mutants PRIDE Homo sapiens 6340 Ion Trap LC/MS Caterino et al. (2014) Marianna Caterino Margherita Ruoppolo 2014-08-11
PXD001026 Systematic evaluation of quantotypic peptides for targeted analysis of the human kinome PRIDE Homo sapiens LTQ Orbitrap Velos; TSQ Vantage Worboys et al. (2014) Jonathan Worboys Claus Jørgensen 2014-08-08
PXD001099 Piezo1 integration of vascular architecture with physiological force LC-MSMS PRIDE Homo sapiens LTQ Orbitrap Velos Li et al. (2014) David Beech David J. Beech 2014-08-08
PXD001120 Adenovirus particles SILAC analysis of different batches and mutant virus PRIDE Homo sapiens LTQ Orbitrap Velos Alqahtani et al. (2014) David Matthews David Matthews 2014-08-08
PXD001211 Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver. PRIDE Mus musculus LTQ Orbitrap Velos Mauvoisin et al. (2014) Manfredo Quadroni Frederic Gachon 2014-08-08
PXD001032 SIK2 phosphorylation in response to glucagon or insulin in murine hepatocytes PRIDE Homo sapiens , Mus musculus LTQ Orbitrap; Q TRAP Patel et al. (2014) David Campbell Kei Sakamoto 2014-08-08
PXD000957 Proteomic analysis of human vitreous humor PRIDE Homo sapiens LTQ Orbitrap Velos Murthy et al. (2014) Akhilesh Pandey Akhilesh Pandey 2014-08-08
PXD000954 The Pan-Human Library: A repository of assays to quantify 10 000 proteins by SWATH-MS / SWATH-MS validation data PRIDE Homo sapiens TripleTOF 5600 Rosenberger et al. (2014) George Rosenberger Ruedi Aebersold 2014-08-08
PXD000953 The Pan-Human Library: A repository of assays to quantify 10 000 proteins by SWATH-MS PRIDE Homo sapiens TripleTOF 5600 Rosenberger et al. (2014) George Rosenberger Ruedi Aebersold 2014-08-08
PXD000593 Human CDK Family PRIDE Homo sapiens LTQ Orbitrap Xu et al. (2014) Xu Li Junjie Chen 2014-08-08
PXD000748 LACI Plasma Microvesicle Biomarker PRIDE Homo sapiens QSTAR Datta, Chen & Sze (2014) Siu Kwan Sze Newman Sze 2014-08-07
PXD000513 Photo-cross-linking mass spectrometry for single amino acid assignment of RNA-binding sites in RNA-binding proteins PRIDE Homo sapiens , Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Dataset with its publication pending Timo Sachsenberg Oliver Kohlbacher 2014-08-07
PXD000612 Ultra-deep human phosphoproteome reveals different regulatory nature of Tyr and Ser/Thr-based signaling PRIDE Homo sapiens Q Exactive Sharma et al. (2014) Mario Oroshi Matthias Mann 2014-08-06
PXD000287 Comparative analysis of chicken seminal plasma PRIDE Gallus gallus LTQ Orbitrap Velos Labas et al. (2014) Labas Valerie 2014-08-06
PXD000677 14-3-3 affinity capture to identify new targets of 14-3-3 signaling during dsRNA-stimulation in human keratinocytes. PRIDE Homo sapiens QSTAR Ohman et al. (2014) Tuula Nyman Tuula A Nyman 2014-08-05
PXD001185 Colonization state influences the hemocyte proteome in a beneficial squid-vibrio symbiosis PRIDE Euprymna scolopes (Hawaiian bobtail squid) Q Exactive; TripleTOF 5600 Schleicher et al. (2014) Tyler Schleicher Spencer V. Nyholm 2014-08-05
PXD000657 CSF proteome mapping: Human plasma LC-MS/MS, Part 7 PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Guldbrandsen et al. (2014) Astrid Guldbrandsen 2014-08-05
PXD000656 CSF proteome mapping: Human Plasma LC-MS/MS, Part 6 PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Guldbrandsen et al. (2014) Astrid Guldbrandsen 2014-08-04
PXD000655 CSF proteome mapping: Human cerebrospinal fluid LC-MS/MS, Part 5 PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Guldbrandsen et al. (2014) Astrid Guldbrandsen 2014-08-04
PXD000654 CSF proteome mapping: Human cerebrospinal fluid LC-MS/MS, Part 4 PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Guldbrandsen et al. (2014) Astrid Guldbrandsen 2014-08-04
PXD000653 CSF proteome mapping: Human cerebrospinal fluid LC-MS/MS, Part 3 PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Guldbrandsen et al. (2014) Astrid Guldbrandsen 2014-08-04
PXD000652 CSF proteome mapping: Human cerebrospinal fluid LC-MS/MS, Part 2 PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Guldbrandsen et al. (2014) Astrid Guldbrandsen 2014-08-04
PXD000651 CSF proteome mapping: Human cerebrospinal fluid LC-MS/MS, Part 1 PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Guldbrandsen et al. (2014) Astrid Guldbrandsen 2014-08-04
PXD000154 MSe_Bsubtilis168 PRIDE Bacillus subtilis (strain 168) Synapt MS Muntel et al. (2014) Sandra Maass 2014-08-04
PXD000624 SILAC analysis of PDGF-treated primary bladder smooth muscle cells PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Yang et al. (2014) Wei Yang 2014-08-04
PXD001190 Similar is not the same: Differences in the function of the (hemi-)cellulolytic regulator XlnR (Xlr1/Xyr1) in filamentous fungi PRIDE Aspergillus nidulans TN02A3, Trichoderma reesei QM9414, Aspergillus niger, Fusarium graminearum GZ3639, Magnaporthe oryzae B157 LTQ Orbitrap Elite Klaubauf et al. (2014) Harm Post Ronald Peter de Vries 2014-08-01
PXD000858 SILAC-Based Strategy for Proteome-Wide Analysis of Protein-Ligand Binding Interactions (Part 1/2) PRIDE Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 6520 Quadrupole Time-of-Flight LC/MS Tran, Adhikari & Fitzgerald (2014) Jagat Adhikari Michael C. Fitzgerald 2014-07-31
PXD000860 SILAC-Based Strategy for Proteome-Wide Analysis of Protein-Ligand Binding Interactions (Part 2/2) PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Tran, Adhikari & Fitzgerald (2014) Jagat Adhikari Michael C. Fitzgerald 2014-07-31
PXD000987 Membrane proteomis profile along human colon PRIDE Homo sapiens LTQ Orbitrap van der Post & Hansson (2014) S.S van der Post Gunnar C Hansson 2014-07-31
PXD001072 Characterization of the surfaceome of the metal-reducing bacterium Desulfotomaculum reducens PRIDE Desulfotomaculum reducens (strain MI-1) Q Exactive Dalla Vecchia et al. (2014) Romain Hamelin Marc Moniatte 2014-07-31
PXD000897 Protein Redox Dynamics During Light-to-Dark Transitions in Cyanobacteria and Impacts Due to Nutrient Limitation PRIDE Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum) LTQ Orbitrap; LTQ Orbitrap Velos Ansong et al. (2014) Matthew Monroe Richard D. Smith 2014-07-31
PXD001107 Detection of Dichlorvos Aducts in Hepatocyte Cell Line LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Velos Bui-Nguyen et al. (2014) William Dennis John A Lewis 2014-07-31
PXD000758 Identification of Drosophila centromere associated proteins PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap Barth et al. (2014) Andreas Thomae Axel Imhof 2014-07-31
PXD000801 Effects of Campylobacter jejuni CJIE1 prophage on protein expression experiment 4 PRIDE Campylobacter jejuni subsp. jejuni LTQ Orbitrap Velos Clark et al. (2014) Clifford Clark Garrett R. Westmacott 2014-07-31
PXD000800 Effects of Campylobacter jejuni CJIE1 prophage on protein expression experiment 3 PRIDE Campylobacter jejuni subsp. jejuni LTQ Orbitrap Velos Clark et al. (2014) Clifford Clark Garrett R. Westmacott 2014-07-31
PXD000799 Effects of Campylobacter jejuni CJIE1 prophage on protein expression experiment 2 PRIDE Campylobacter jejuni 10186 LTQ Orbitrap Velos Clark et al. (2014) Clifford Clark Garret R. Westmacott 2014-07-31
PXD000798 Effects of Campylobacter jejuni CJIE1 prophage on protein expression experiment 1 PRIDE Campylobacter jejuni 10227 LTQ Orbitrap Velos Clark et al. (2014) Clifford Clark Garrett R. Westmacott 2014-07-31
PXD000923 Rice Pistil LC-MSMS PRIDE Rice(O. sativa) TripleTOF 5600 Wang et al. (2014) Kun Wang wangkun 2014-07-31
PXD001187 Influence of digestion protocol in Protein Quantitation PRIDE Escherichia coli LTQ Orbitrap Velos Chiva, Ortega & Sabidó (2014) Cristina Chiva Eduard Sabidó 2014-07-30
PXD000249 DNA repair in Mycoplasma gallisepticum PRIDE Mycoplasma gallisepticum TripleTOF 5600 Gorbachev et al. (2013) Dmitry Alexeev Dmitry Ischenko 2014-07-30
PXD001049 Nitrated protein profile of rat hypoxic brain PRIDE Rattus norvegicus 4800 Proteomics Analyzer Peinado et al. (2014) Santos Blanco Maria Angeles Peinado 2014-07-30
PXD000459 Identification of SUMO sites by LC-MSMS PRIDE Homo sapiens LTQ Orbitrap Velos Impens et al. (2014) Francis Impens 2014-07-29
PXD001029 Species identification of archaeological skin objects from Danish bogs PRIDE Capra hircus , Bos taurus , Ovis aries Q Exactive; LTQ Orbitrap Velos Brandt et al. (2014) Enrico Cappellini Enrico Cappellini 2014-07-29
PXD000909 Silkworm testis LC-MS/MS PRIDE Bombyx mori (Silk moth) Q Exactive Zhang et al. (2014) Yan Zhang Ping Zhao 2014-07-28
PXD000349 2D-DIGE global protein profiling of alcohol-dependent mouse brain PRIDE Mus musculus instrument model: AB SCIEX TOF/TOF™ 5800 System Gorini, Roberts & Mayfield (2013) Giorgio Gorini 2014-07-28
PXD000813 Sex-partitioning of the Plasmodium falciparum gametocyte proteome provides insight into falciparum-specific cell biology PRIDE Homo sapiens , Plasmodium falciparum 6520 Quadrupole Time-of-Flight LC/MS Tao et al. (2014) Dingyin Tao Rhoel R Dinglasan 2014-07-25
PXD000902 Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs PRIDE Xenopus laevis (African clawed frog) LTQ Orbitrap Velos; Q Exactive Smits et al. (2014) A.H. Smits Michiel Vermeulen 2014-07-23
PXD000764 Discovery of cerebrospinal fluid new biomarkers for meningitis in children PRIDE Homo sapiens , Streptococcus pneumoniae (strain ATCC BAA-255 / R6) LTQ Orbitrap Velos Ternent et al. (2014) Da Qi Rob Beynon 2014-07-22
PXD001157 Oligosaccharide Substrate Preferences of Human Extracellular Sulfatase Sulf2 PRIDE Bos taurus 6520 Quadrupole Time-of-Flight LC/MS Huang et al. (2014) Yu Huang Joseph Zaia 2014-07-22
PXD000756 Comparative analysis of the secretome from a model filarial nematode (Litomosoides sigmodontis) reveals maximal diversity in gravid female parasites PRIDE Litomosoides sigmodontis (Filarial nematode worm) LTQ Orbitrap Armstrong et al. (2014) Stuart Armstrong Benjamin Makepeace 2014-07-22
PXD000594 An investigation into the protein composition of the Glossina morsitans morsitans peritrophic matrix PRIDE Glossina morsitans instrument model: LTQ; LTQ Rose et al. (2014) Stuart Armstrong 2014-07-22
PXD000534 Identification of novel biomarker candidates for the immunohistochemical diagnosis of cholangiocellular carcinoma - LC-MS Part PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Padden et al. (2014) Julian Uszkoreit 2014-07-22
PXD000471 Characterization of functional reprogramming during osteoclast development using quantitative proteomics and mRNA profiling PRIDE Mus musculus LTQ Orbitrap Velos An et al. (2014) Aleksandra Nita-Lazar 2014-07-22
PXD000990 Cocaine and Environmental Enrichment Proteomics Study of Rat Nucleus Accumbens PRIDE Rattus norvegicus LTQ Orbitrap Velos Lichti et al. (2014) Cheryl Lichti Thomas Green 2014-07-22
PXD000881 Identification of Drosophila USP2 partners PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap Velos Engel et al. (2014) Yohann Couté Christophe Bruley 2014-07-18
PXD000357 Identification of ERK1 direct substrates using stable isotope labeled kinase assay linked phosphoproteomics PRIDE Homo sapiens LTQ Orbitrap Velos Xue et al. (2014) Liang Xue 2014-07-17
PXD001073 Metallothionein-like peptides of Russula atropurpurea PRIDE Russula atropurpurea maXis Leonhardt et al. (2014) Jiri Santrucek Pavel Kotrba 2014-07-16
PXD001025 Basement Membranes from Human Retinal Blood Vessels, Inner Limiting Membranes, and Lens Capsules PRIDE Homo sapiens LTQ Orbitrap Velos Uechi et al. (2014) Guy Uechi Guy T. Uechi 2014-07-16
PXD000931 Disclosure of selective advantages in the “modern” sublineage of the Mycobacterium tuberculosis Beijing genotype family by quantitative proteomics. PRIDE Mycobacterium tuberculosis C LTQ FT de Keijzer et al. (2014) Jeroen de Keijzer Peter van Veelen 2014-07-16
PXD000364 A magnetic immunoenrichment strategy for N-terminal-oriented proteogenomics applied to the marine bacterium Roseobacter denitrificans PRIDE Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans) LTQ Orbitrap Bland, Bellanger & Armengaud (2014) Jean ARMENGAUD 2014-07-16
PXD000441 Human AML cell lines LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Velos; LTQ Orbitrap Elite Aasebø et al. (2014) Elise Aasebø Frode Steingrimsen Berven 2014-07-15
PXD000683 Genomics and Proteomics Provide New Insight into the Commensal and Pathogenic Lifestyles of Bovine and Human-associated Staphylococcus epidermidis PRIDE Staphylococcus epidermidis QSTAR Savijoki et al. (2014) Pia Siljamäki Tuula A Nyman 2014-07-15
PXD000744 CNB Lipid Rafts reAnalysis. PRIDE Homo sapiens Bruker Daltonics esquire series Dataset with its publication pending J. Alberto Medina-Aunon J.P. Albar 2014-07-14
PXD000662 Proteomic profiling and characterization of differential allergens in the nematodes Anisakis simplex sensu stricto and A. pegreffii PRIDE Anisakis simplex instrument model: 4800 Plus MALDI TOF/TOF Arcos et al. (2014) Sergio Ciordia Higuera 2014-07-11
PXD000396 Development and performance evaluation of an ultra-low flow nano liquid chromatography-tandem mass spectrometry set-up PRIDE Homo sapiens Q Exactive Köcher et al. (2014) thomas koecher 2014-07-10
PXD000905 Proteomic signatures of the Pacific oyster Crassostrea gigas cellular response to Ostreid herpes virus -1 (OsHV-1) infection: a metabolic response. PRIDE Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Bruker Daltonics HCT Series Corporeau et al. (2014) E Com Charles Pineau 2014-07-10
PXD000119 Nano HPLC Chip Ion Trap MS/MS of human pancreatic cancer cells PRIDE Homo sapiens instrument model: nano HPLC Chip Ion Trap Brandi et al. (2013) Daniela Cecconi 2014-07-10
PXD001038 Differentially embedded glioblastoma tumor protein quantitation PRIDE Homo sapiens TripleTOF 5600 Dataset with its publication pending Hannah Johnson Forest M White 2014-07-09
PXD000161 Protemoic analysis of Yeast during retenostat cultivation PRIDE Saccharomyces cerevisiae (Baker's yeast) instrument model: Q-exactive; Q Exactive Dataset with its publication pending N. Binai 2014-07-09
PXD000384 V5-tagged LIMD1 in HEK293 cells with or without JNK2 activation PRIDE Homo sapiens instrument model: LTQ; LTQ Sun & Irvine (2013) Gongping Sun 2014-07-09
PXD000722 pTyr-CoIP HP/AGS PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending Christian Koehler Bernd Thiede 2014-07-09
PXD000253 Quantitative Mass Spectrometry Reveals Plasticity of Metabolic Networks in Mycobacterium smegmatis PRIDE Mycobacterium smegmatis (strain ATCC 700084 / mc155) LTQ Orbitrap Elite Chopra et al. (2014) Romain Hamelin Moniatte 2014-07-09
PXD000670 Phosphoproteomics combined with quantitative 14-3-3-affinity capture identifies SIRT1 and RAI as new regulators of cytosolic dsRNA-induced innate immune response PRIDE Homo sapiens QSTAR Ohman et al. (2014) Tuula Nyman Tuula Nyman 2014-07-08
PXD000978 Proteomic profiling of MDC1A muscle using TMT quantitation, Bruno Oliveira PRIDE Mus musculus LTQ Orbitrap Menezes de Oliveira et al. (2014) Carina Sihlbom Carina Sihlbom 2014-07-08
PXD000710 Proteogenomics of Venturia pirina PRIDE Venturia pirina ultraflex; Bruker Daltonics HCT Series; LTQ Orbitrap Elite Cooke et al. (2014) Ira Cooke Suresh Mathivanan 2014-07-02
PXD001001 A substrate trapping approach identifies proteins regulated by reversible S-nitrosylation PRIDE Homo sapiens , Mus musculus LTQ Orbitrap Ben-Lulu et al. (2014) Tamar Ziv Moran Benhar 2014-07-02
PXD001020 Redox-state of pentraxin 3 as a novel biomarker for resolution of inflammation and survival in sepsis PRIDE Mus musculus LTQ Orbitrap Cuello et al. (2014) Xiaoke Yin Manuel Mayr 2014-07-01
PXD000496 Proteomics of TGF beta signaling PRIDE Homo sapiens Q Exactive Dataset with its publication pending Mario Oroshi 2014-07-01
PXD000216 Proteome Changes Induced by Imatinib and Novel Imatinib Derivatives in K562 Human Chronic Myeloid Leukemia Cells PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Dataset with its publication pending Pieter-Jan De Bock 2014-06-30
PXD000875 The membrane proteome of Medicago truncatula roots displays qualitative and quantitative changes in response to arbuscular mycorrhizal symbiosis PRIDE Medicago truncatula var. truncatula LTQ Orbitrap Abdallah et al. (2014) cosette abdallah Ghislaine Recorbet 2014-06-30
PXD000577 PhosFox: a software tool for peptide-level processing of LC-MS/MS-based phosphoproteomic data PRIDE Homo sapiens QSTAR Söderholm et al. (2014) Tuula Nyman 2014-06-30
PXD000536 HCMV-NEC analysis PRIDE Homo sapiens , Human cytomegalovirus (strain AD169) (HHV-5) (Human herpesvirus 5) LTQ Orbitrap Velos Milbradt et al. (2014) Yohann Couté Christophe Bruley 2014-06-30
PXD001092 Extracellular Matrix Signatures of Human Primary Metastatic Colon Cancers and their Liver Metastases MassIVE Homo sapiens LTQ Orbitrap Dataset with its publication pending Karl Clauser Steven A. Carr 2014-06-27
PXD001053 Rescue of disrupted mechanotransduction as a new therapeutic strategy in human dilated cardiomyopathy PRIDE Mus musculus LTQ Orbitrap Dataset with its publication pending Jason Maynes Jason T Maynes 2014-06-26
PXD000015 Esca proper and apoplexy on trunk wood of Vitis vinifera L. cv.Chardonnay PRIDE Vitis Bruker Daltonics amaZon series; instrument model: Bruker Ion Trap amaZon Dataset with its publication pending Tchilabalo Dilezitoko ALAYI 2014-06-25
PXD000435 Potato secretome during Phytophthora infection PRIDE Solanum tuberosum instrument model: LTQ Orbitrap XL; LTQ Orbitrap XL Ali et al. (2014) Fredrik Levander 2014-06-24
PXD000439 Reconstructing targetable pathways in lung cancer by integrating diverse omics data PRIDE Homo sapiens LTQ Velos Balbin et al. (2013) Damian Fermin 2014-06-24
PXD001077 PeptideShaker PRIDE Pyrococcus furiosus LTQ Orbitrap Velos Vaudel et al. (2012) Marc Vaudel Lennart Martens 2014-06-24
PXD000502 Mouse cerebellum (phospho)proteome LC-MSMS PRIDE Mus musculus Q Exactive; LTQ Orbitrap Elite Corradini et al. (2014) Eleonora Corradini 2014-06-17
PXD001030 Proteomic analysis of proteins related to rice grain chalkiness using iTRAQ based on a notched-belly mutant with white-belly PRIDE Rice(O. sativa) TripleTOF 5600 Lin et al. (2014) Zhaomiao Lin Zhenghui Liu 2014-06-17
PXD000629 Proteomics analysis of B. bigemina PRIDE Babesia bigemina, Babesia sp. LTQ Orbitrap; instrument model: LTQ Orbitrap Jackson et al. (2014) Dong Xia 2014-06-16
PXD000783 The Phophoproteome of Chlamydomonas reinhardtii PRIDE Chlamydomonas reinhardtii CC3269 LTQ Orbitrap Velos; TripleTOF 5600 Wang et al. (2014) William Slade Leslie M. Hicks 2014-06-11
PXD000404 Comparative Proteome Profiling of Bovine and Human Staphylococcus epidermidis Strains to Search for Cell-surface Bound Factors with Plausible Roles in Virulence or Adaptation PRIDE Staphylococcus epidermidis QSTAR Siljamäki et al. (2014) Pia Siljamäki Tuula A Nyman 2014-06-10
PXD001047 Additional precursor purification in isobaric mass tagging experiments by traveling wave ion mobility separation (TWIMS). PRIDE Homo sapiens , Saccharomyces cerevisiae (Baker's yeast) Synapt MS Shliaha et al. (2014) Pavel Shliaha Kathryn Susan Lilley 2014-06-10
PXD000362 Systems Biology Proteomic Analysis of Cerebral Cavernous Malformation PRIDE Homo sapiens LTQ Orbitrap Edelmann et al. (2014) Kevin Knagge 2014-06-09
PXD000817 Phosphoproteome profiles of the phytopathogenic fungi Alternaria brassicicola and Botrytis cinerea PRIDE Alternaria brassicae, Botryotinia fuckeliana (strain B05.10) (Noble rot fungus) (Botrytis cinerea) LTQ Davanture et al. (2014) Marlène Davanture Michel Zivy 2014-06-09
PXD000186 AtT 20 endogenous peptides PRIDE Mus musculus LTQ Orbitrap Hayakawa et al. (2013) Eisuke Hayakawa 2014-06-09
PXD000591 Human Adenovirus 5 (HAdV5), LC-MSMS PRIDE Human adenovirus C serotype 5 (HAdV-5) (Human adenovirus 5) LTQ Orbitrap; Q Exactive Benevento et al. (2014) Marco Benevento Albert J.R. Heck 2014-06-09
PXD000761 Phosphoproteome profiling of toll-like receptor response to different ligand stimulation in macrophages identifies differences in global phosphorylation dynamics PRIDE Mus musculus LTQ Orbitrap Velos Sjoelund, Smelkinson & Nita-Lazar (2014) Aleksandra Nita-Lazar Aleksandra Nita-Lazar 2014-06-09
PXD000948 Macro-porous Reversed Phase Separation of Proteins Combined with Reversed Phase Separation of Phosphopeptides and Tandem Mass Spectrometry for Profiling the Phosphoproteome of MDA-MB-231 cells PRIDE Homo sapiens Waters instrument model Ye & Li (2014) Xiaoxia Ye Xiaoxia Ye 2014-06-06
PXD000878 Phosphoproteomics of MuSK Signaling PRIDE Mus musculus LTQ Orbitrap Velos Duernberger et al. (2014) Gerhard Duernberger Karl Mechtler 2014-06-05
PXD000558 Phosphoproteomics of MuSK Signaling PRIDE Mus musculus LTQ Orbitrap Velos Duernberger et al. (2014) Gerhard Duernberger Karl Mechtler 2014-06-05
PXD000501 In-depth proteomic analysis of secretome and whole cells of mouse astrocyte PRIDE Mus musculus Q Exactive Han et al. (2014) Dohyun Han 2014-06-05
PXD000548 Proteome analyses of the human anterior temporal lobe PRIDE Homo sapiens LTQ Orbitrap Martins-de-Souza et al. (2014) Daniel Martins-de-Souza Daniel Martins-de-Souza 2014-06-05
PXD000547 Proteome of the Human Corpus Callosum PRIDE Homo sapiens LTQ Orbitrap Martins-de-Souza et al. (2014) Daniel Martins-de-Souza Daniel Martins-de-Souza 2014-06-05
PXD000457 Large scale proteomics of cholesteatoma PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Britze et al. (2014) Johan Palmfeldt 2014-06-04
PXD000631 Comparative Exoprotein Profiling of Different Staphylococcus epidermidis strains Reveals Potential Link between Non-classical Protein Export and Virulence PRIDE Staphylococcus epidermidis QSTAR Siljamäki et al. (2014) Pia Siljamäki Tuula A Nyman 2014-06-04
PXD000587 Large-scale proteome characterization of the cassava root PRIDE Manihot esculenta (Jatropha manihot) LTQ Orbitrap XL Vanderschuren et al. (2014) Katja Baerenfaller Herve Vanderschuren 2014-06-03
PXD000866 iPSC-derived neurons from GBA1-associated Parkinson's disease patients show autophagic/lysosomal dysfunction and impaired calcium homeostasis PRIDE Homo sapiens LTQ Orbitrap Elite Schöndorf et al. (2014) Fiona McAllister Michela Deleidi 2014-06-03
PXD001007 Genome-wide identification and functional analysis of Apobec-1 mediated C-to-U RNA editing in mouse small intestine and liver PRIDE Mus musculus Q Exactive Blanc et al. (2014) Johannes Graumann Johannes Graumann 2014-06-02
PXD000926 Deep Proteomics of the Xenopus laevis Egg using an mRNA-derived Reference Database PRIDE Xenopus laevis (African clawed frog) Q Exactive Wühr et al. (2014) Martin Wuehr Steven Gygi 2014-05-30
PXD000871 Cell-Specific Labeling Enzymes For Analysis of Cell-Cell Communication in Continuous Co-Culture, Part 2 / 2 PRIDE Mus musculus LTQ Orbitrap Tape et al. (2014) Christopher Tape Claus Jorgensen 2014-05-29
PXD000870 Cell-Specific Labeling Enzymes For Analysis of Cell-Cell Communication in Continuous Co-Culture, Part 1 / 2 PRIDE Homo sapiens , Mus musculus LTQ Orbitrap Tape et al. (2014) Christopher Tape Claus Jorgensen 2014-05-29
PXD000743 Insight into the protein composition of immunoglobulin light chain deposits of eyelid, orbital, and conjunctival amyloidosis. PRIDE Homo sapiens TripleTOF 5600 Dataset with its publication pending Nadia Sukusu Nielsen Jan J. Enghild 2014-05-29
PXD000368 Grayling Pleiotropy on plastic adaptive protein expression change PRIDE Thymallus thymallus (Salmo thymallus) LTQ Orbitrap Velos Papakostas et al. (2014) Spiros Papakostas 2014-05-28
PXD000865 Mass spectrometry based draft of the human proteome PRIDE Homo sapiens LTQ Orbitrap Velos; LTQ Orbitrap Elite Wilhelm et al. (2014) Hannes Hahne Bernhard Kuster 2014-05-28
PXD000781 Huwe1-mediated ubiquitylation of Dvl defines a novel negative feedback loop in the Wnt signaling pathway PRIDE Mus musculus LTQ Orbitrap Elite de Groot et al. (2014) Katerina Sedova Zbynek Zdrahal 2014-05-28
PXD000746 Proteomics of Fuchs’ Endothelial Corneal Dystrophy indicate altered assembly and modulation of the extracellular matrix in Descemet’s membrane PRIDE Homo sapiens TripleTOF 5600 Poulsen et al. (2014) Ebbe Toftgaard Poulsen Jan Johannes Enghild 2014-05-27
PXD000873 Analyses of the Xylem Sap Proteomes Identified Candidate Fusarium virguliforme Proteinacious Toxins PRIDE Glycine max (Glycine hispida), Fusarium virguliforme LTQ Orbitrap Velos Abeysekara & Bhattacharyya (2014) Nilwala Abeysekara Madan K Bhattacharyya 2014-05-23
PXD000976 Rat Neural Stem Cell Phosphoproteome PRIDE Rattus norvegicus LTQ Orbitrap Dataset with its publication pending Xuyang Zhao Jianguo Ji 2014-05-23
PXD000625 Hepatocyte-specific BIRC5 (Survivin)-knockout-mouse model, Subcellular fractionation PRIDE Mus musculus LTQ Orbitrap; instrument model: LTQ Orbitrap Bracht et al. (2014) Thilo Bracht 2014-05-22
PXD000836 HOPE-fixation of lung tissue allows retrospective proteome and phosphoproteome studies PRIDE Homo sapiens LTQ Orbitrap Velos Shevchuk et al. (2014) Olga Shevchuk Lothar Jänsch 2014-05-22
PXD000293 Ti4+-IMAC label-free quantification PRIDE Homo sapiens LTQ Orbitrap Elite de Graaf et al. (2014) Piero Giansanti Albert J. R. Heck 2014-05-22
PXD000993 Virion proteome of Cafeteria roenbergensis virus strain BV-PW1 PRIDE Cafeteria roenbergensis LTQ Orbitrap Dataset with its publication pending Matthias Fischer Leonard Foster 2014-05-22
PXD000223 Nipped in the bud: a microbial effector destabilizes MADS-domain transcription factors PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap; instrument model: LTQ Orbitrap MacLean et al. (2014) Gerhard Saalbach 2014-05-21
PXD000241 Serine Hydrolases from E. Coli PRIDE Escherichia coli TripleTOF 5600 Dataset with its publication pending Dmitry Shamshurin 2014-05-20
PXD000237 Beta vulgaris (sugarbeet) infected with BNYVV (beet necrotic yellow vein virus) PRIDE Beta vulgaris (Sugar beet) LTQ Orbitrap Velos Dataset with its publication pending Carolyn Broccardo 2014-05-20
PXD000176 Identifying RasGAP SH2 binding partners in Drosophila using mass spectrometry PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap; instrument model: LTQ-Orbitrap Rowshanravan et al. (2014) Behzad Rowshanravan 2014-05-20
PXD000560 Chasing protein arginine phosphorylation: development of a selective enrichment method using a trapping mutant phosphatase PRIDE Bacteria, Bacillus subtilis subsp. subtilis str. 168 LTQ Orbitrap Velos Trentini et al. (2014) Debora Broch Trentini Karl Mechtler 2014-05-19
PXD000568 Protein abundance changes and ubiquitylation targets identified upon inhibition of the proteasome with Syringolin A PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap XL Svozil et al. (2014) Katja Baerenfaller Katja Baerenfaller 2014-05-19
PXD000894 A global non-coding RNA system modulates fission yeast protein levels in response to stress PRIDE Schizosaccharomyces pombe 927 LTQ Orbitrap Leong et al. (2014) Hui Sun Leong Crispin J Miller 2014-05-19
PXD000789 H2A.Bbd localizes to DNA synthesis sites PRIDE Mus musculus LTQ Orbitrap Sansoni et al. (2014) Andreas Schmidt Axel Imhof 2014-05-18
PXD000041 Hrp3-TAP_Purification from Schizosaccharomyces pombe PRIDE Schizosaccharomyces pombe 972h- LTQ Orbitrap; instrument model: LTQ-Orbitrap Pointner et al. (2012) Ignasi Forne 2014-05-16
PXD000835 Pacific Oyster Ctenidia Proteomics PRIDE Crassostrea gigas (Pacific oyster) (Crassostrea angulata) LTQ Orbitrap Dataset with its publication pending Emma Timmins-Schiffman Steven Roberts 2014-05-15
PXD000480 Rat prefrontal cortex LC-MS/MS PRIDE Rattus norvegicus LTQ Orbitrap Farrelly et al. (2014) Lorna Farrelly 2014-05-13
PXD000937 Mariprofundus ferroooxydans PV-1 osmotic shock vs extraction with NaOH LC-MSMS PRIDE Mariprofundus ferrooxydans PV-1 LTQ Orbitrap Dataset with its publication pending Roman Barco Katrina Edwards 2014-05-13
PXD000663 A high-confidence glycosome proteome for procyclic form Trypanosoma brucei by epitope-tag organelle enrichment and SILAC PRIDE Trypanosoma brucei LTQ Orbitrap Velos Güther et al. (2014) Michael Urbaniak 2014-05-13
PXD000681 Probing tyrosine kinase inhibitors specificity PRIDE Homo sapiens LTQ Orbitrap; LCQ Classic; LTQ Orbitrap Velos; LTQ Orbitrap Elite; TripleTOF 5600 Giansanti et al. (2014) Piero Giansanti Albert J.R. Heck 2014-05-12
PXD000574 Dectin-1/Syk pathway activates autophagy-dependent unconventional protein secretion from human macrophages PRIDE Homo sapiens QSTAR Öhman et al. (2014) Tuula Nyman 2014-05-12
PXD000684 Proteomics of Pseudomonas aeruginosa PAO1 and PA14 PRIDE Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228), Pseudomonas aeruginosa PA14 LTQ Orbitrap Kwon et al. (2014) Taejoon Kwon Edward Marcotte 2014-05-08
PXD000592 Mouse Core Acrosomal Matrix LC-MSMS PRIDE Mus musculus LTQ Orbitrap Velos Guyonnet, Egge & Cornwall (2014) Dr Gail A Cornwall 2014-05-07
PXD000608 Proteomics of cerebrospinal fluid microvesicles PRIDE Homo sapiens Q Exactive Chiasserini et al. (2014) D Chiasserini 2014-05-07
PXD000807 Human oral cancer brush biopsy iTRAQ PRIDE Homo sapiens LTQ Orbitrap Velos Yang et al. (2014) Tim Griffin Timothy Jon Griffin 2014-05-07
PXD000495 Pea Seedling Mitochondrial Lysine Acetylome PRIDE Pisum sativum (Garden pea) LTQ Orbitrap Smith-Hammond, Hoyos & Miernyk (2014) Colin Smith-Hammond Jan A. Miernyk 2014-05-01
PXD000318 Spider genomes provide insight into composition, function and evolution of venom and silk PRIDE Stegodyphus mimosarum, Acanthoscurria geniculata TripleTOF 5600; instrument model: TripleTOF 5600 Sanggaard et al. (2014) Kristian Wejse Sanggaard 2014-05-01
PXD000932 The Haemophilus ducreyi LspA1 Protein Inhibits Phagocytosis By Using a New Mechanism Involving Activation of C-Terminal Src Kinase PRIDE Homo sapiens LTQ Orbitrap Elite Dodd et al. (2014) David Trudgian Eric Hansen 2014-04-29
PXD000850 SIRT_mutant interactome PRIDE Homo sapiens LTQ Orbitrap Velos Lee et al. (2014) Dae-Kyum Kim Kwan Yong Choi 2014-04-28
PXD000159 SIRT6 and SIRT7 binding proteome PRIDE Homo sapiens LTQ Orbitrap Lee et al. (2014) Dae-Kyum Kim 2014-04-28
PXD000505 Campylobacter concisus UNSWCD GeLC-MSMS PRIDE Campylobacter concisus UNSWCD instrument model: ESI-TRAP Pang et al. (2014) A Tay 2014-04-28
PXD000504 Campylobacter concisus strain BAA-1547 GeLC-MSMS PRIDE Campylobacter concisus (strain 13826) instrument model: ESI-TRAP Pang et al. (2014) A Tay 2014-04-28
PXD000928 Melanoma metastases: association between S100A13 expression and chemotherapy resistance PRIDE Homo sapiens LTQ Orbitrap Velos Azimi et al. (2014) Maria Pernemalm Janne Lehtiö 2014-04-25
PXD000070 Plasmodium falciparum schizont phosphoproteome PRIDE Plasmodium falciparum (isolate 3D7) LTQ Orbitrap Velos; instrument model: LTQ Orbitrap Velos ETD Collins et al. (2014) Mark Collins 2014-04-24
PXD000561 A draft map of the human proteome PRIDE Homo sapiens LTQ Orbitrap Velos; LTQ Orbitrap Elite Pinto et al. (2014)Kim et al. (2014) Akhilesh Pandey Akhilesh Pandey 2014-04-24
PXD000917 Proteomic identification of anti-tetanus toxoid antibodies from human serum (HD1) PRIDE Homo sapiens LTQ Orbitrap Velos Lavinder et al. (2014)Boutz et al. (2014) Daniel Boutz Edward Marcotte 2014-04-24
PXD000916 Proteomic identification of monoclonal antibodies from rabbit serum and analysis of FDR using differential cysteine labeling PRIDE Oryctolagus cuniculus LTQ Orbitrap Velos Boutz et al. (2014) Daniel Boutz Edward Marcotte 2014-04-24
PXD000671 Leishmania donovani phosphoproteome during differentiation and as a response to environmental signals PRIDE Leishmania donovani QSTAR Tsigankov et al. (2014) Polina Tsigankov Dan Zilberstein 2014-04-24
PXD000704 Glycoprotein Signatures for Aggressive Prostate Cancer via SWATH mass spectrometry PRIDE Homo sapiens TripleTOF 5600 Liu et al. (2014) Yansheng Liu Ruedi Aebersold 2014-04-23
PXD000133 Equine Cerebrospinal Fluid PRIDE Equus caballus LTQ Dataset with its publication pending Carolyn Broccardo 2014-04-23
PXD000532 SOD cambium Proteomics Data PRIDE Populus tremula x Populus tremuloides instrument model: Q-TOF Ultima; Q-Tof ultima Srivastava et al. (2013) Joakim Bygdell 2014-04-17
PXD000475 Yersinia enterocolitica SOR17 PRIDE Bacteria, Eubacteriaceae, Yersinia enterocolitica LTQ Orbitrap; instrument model: LTQ Orbitrap Kakoschke et al. (2014) Ombeline Rossier 2014-04-16
PXD000579 A proteome reference map of the wine lactic acid bacterium Oenococcus oeni ATCC BAA-1163 PRIDE Oenococcus oeni instrument model: 4800 Plus MALDI TOF/TOF Mohedano Mde et al. (2014) Sergio Ciordia Higuera 2014-04-16
PXD000414 Quantitiative phosphoproteomic analysis of SKS1 signaling network involved in yeast filamentous growth by LC-MS in combination with SILAC PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Johnson et al. (2014) Hye Kyong Kweon 2014-04-16
PXD000326 A multi-omic analysis of an Enterococcus faecium mutant reveals genetic mutation and dramatic changes of mRNA and protein expressions PRIDE Enterococcus faecalis (Streptococcus faecalis) TripleTOF 5600 Chang et al. (2013) Liu liu 2014-04-16
PXD000350 Sumoylated hnrnpa2b1 controls the sorting of miRNAs into two exosomes through binding to specific motifs PRIDE Homo sapiens LTQ Orbitrap Villarroya-Beltri et al. (2013) Marco Trevisan-Herraz 2014-04-16
PXD000900 Confetti: A Multi-protease Map of the HeLa Proteome for Comprehensive Proteomics PRIDE Homo sapiens Q Exactive; LTQ Orbitrap Elite Guo et al. (2014) David Trudgian Hamid Mirzaei 2014-04-16
PXD000732 Understanding the antimicrobial mechanism of TiO2-based nanocomposite films in a pathogenic bacterium PRIDE Pseudomonas aeruginosa TripleTOF 5600 Kubacka et al. (2014) Sergio Ciordia Juan Pablo Albar Ramirez 2014-04-16
PXD000712 Small proteome in trypanosomes PRIDE Trypanosoma brucei LTQ Orbitrap Ericson et al. (2014) F Butter Mann 2014-04-16
PXD000838 Mitochondrial proteomics investigation of a cellular model of impaired dopamine homeostasis, an early step in Parkinson's disease pathogenesis PRIDE Homo sapiens Synapt MS Alberio et al. (2014) Luisa Pieroni Andrea Urbani 2014-04-15
PXD000680 Stable isotope labeling of phosphoproteins for large-scale phosphorylation rate determination PRIDE Homo sapiens LTQ Orbitrap; Q Exactive; LTQ Orbitrap Elite Molden et al. (2014) Rosalynn Molden Benjamin A Garcia 2014-04-15
PXD000688 Human milk and gastric peptidomics PRIDE Homo sapiens 6520 Quadrupole Time-of-Flight LC/MS Dallas et al. (2014) David Dallas David Dallas 2014-04-15
PXD000038 Proteomics analysis of wound healing in porcine subcutaneous fatty tissue postmonopolar electrosurgery and harmonic blade incisions. PRIDE Sus scrofa domesticus (domestic pig) LCQ Deca XP Plus Nanduri et al. (2013) Ken Pendarvis 2014-04-15
PXD000580 Proteomic analysis of yeast mutant RNA exosome complexes PRIDE Saccharomyces cerevisiae (Baker's yeast) Q-Tof Premier; instrument model: Q-Tof Premier Lourenço, Leme & Oliveira (2013) Rogerio Lourenco 2014-04-15
PXD000509 Identification and monitoring of host cell proteins by mass spectrometry combined with high performance immunochemistry testing PRIDE Escherichia coli LTQ Orbitrap; instrument model: LTQ Orbitrap Bomans et al. (2013) Patrick Bulau 2014-04-15
PXD000289 Sulfolobus acidocaldarius phosphoproteome PRIDE Sulfolobus acidocaldarius Bruker Daltonics HCT Series Reimann et al. (2013) Trong Khoa Pham 2014-04-15
PXD000462 VEGF Study in Primary Human Endothelial Cells PRIDE Homo sapiens LTQ Orbitrap Elite Hang et al. (2013) Nathan Tedford 2014-04-15
PXD000567 Protein abundance changes and ubiquitylation targets identified upon inhibition of the proteasome with Syringolin A PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap XL Svozil et al. (2014) Katja Baerenfaller Katja Baerenfaller 2014-04-15
PXD000566 Protein abundance changes and ubiquitylation targets identified upon inhibition of the proteasome with Syringolin A PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap XL Svozil et al. (2014) Katja Baerenfaller Katja Baerenfaller 2014-04-15
PXD000565 Protein abundance changes and ubiquitylation targets identified upon inhibition of the proteasome with Syringolin A PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap XL Svozil et al. (2014) Katja Baerenfaller Katja Baerenfaller 2014-04-15
PXD000642 Quantitative proteomics of extracellular vesicles released from human primary macrophages upon beta/glucan stimulation PRIDE Homo sapiens QSTAR Cypryk et al. (2014) Tuula Nyman 2014-04-15
PXD000521 Protein abundance changes and ubiquitylation targets identified upon inhibition of the proteasome with Syringolin A PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap XL Svozil et al. (2014) Katja Baerenfaller Katja Baerenfaller 2014-04-15
PXD000374 SRM-analysis of Podospora anserina mitochondria (Plohnke) PeptideAtlas Podospora anserina TSQ Vantage Plohnke et al. (2014) Nicole Plohnke 2014-04-14
PXD000300 Changes in mouse pathways after high-fat diet (Sabido, et al.) PeptideAtlas Mus musculus 4000 QTRAP Sabidó et al. (2013) Eduard Sabidó 2014-04-14
PXD000291 Quantitative microdissected breast cancer analysis (Liu, et al.) PeptideAtlas Homo sapiens Xevo TQ-S Liu et al. (2013) Ning Qing Liu 2014-04-14
PXD000232 Variation across lineages of M. tuberculosis (N. Kruh-Garcia) PeptideAtlas Mycobacterium tuberculosis Xevo TQ-S Kruh-Garcia et al. (2014) Nicole Kruh-Garcia 2014-04-14
PXD000648 MRM dataset of 185 one hit wonders in human liver PeptideAtlas Homo sapiens 4000 QTRAP Chen et al. (2014) Chen Chen Pengyuan Yang 2014-04-14
PXD000469 Proteomics of pollen development PRIDE Nicotiana tabacum (Common tobacco) LTQ Orbitrap Ischebeck et al. (2014) Volker Egelhofer 2014-04-14
PXD000601 Mouse Liver Circadian Proteome PRIDE Mus musculus LTQ Orbitrap Robles, Cox & Mann (2014) Maria S. Robles 2014-04-14
PXD000557 Pine Golgi membranes from xylem enriched by FFE PRIDE Pinus radiata (Monterey pine) instrument model: TripleTOF Parsons et al. (2013) Joshua Heazlewood 2014-04-14
PXD000541 2D-LC/MS/MS analysis of Escherichia coli during exposure an abrupt downshift in water activity PRIDE Escherichia coli LTQ Orbitrap Kocharunchitt et al. (2014) Chawalit Kocharunchitt 2014-04-14
PXD000583 2D-LC/MS/MS analysis of Escherichia coli under optimal growth condition PRIDE Escherichia coli LTQ Orbitrap Kocharunchitt et al. (2014) Chawalit Kocharunchitt 2014-04-14
PXD000635 Multifactorial Comparative Proteomic Study of Cytochrome P450 2E1 Function in Chronic Alcohol Administration PRIDE Mus musculus 4800 Proteomics Analyzer Wang et al. (2014) Rong Wang 2014-04-11
PXD000472 Environmental stress affects the activity of metabolic and growth factor signaling networks and induces autophagy markers in breast cancer cell lines PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Casado et al. (2014) Pedro Casado-Izquierdo 2014-04-11
PXD000248 Characterization of individual mouse cerebrospinal fluid proteomes PRIDE Mus musculus LTQ Orbitrap Velos Smith et al. (2014) Matthew Monroe 2014-04-09
PXD000852 Native protein mapping and visualization of protein interactions in human plasma high-density lipoprotein by 2-DE and LC-MS/MS PRIDE Homo sapiens Synapt MS Jin et al. (2014) Ya Jin Ya Jin 2014-04-07
PXD000445 Proteomic profiling of colorectal adenomas PRIDE Homo sapiens instrument model: LTQ Orbitrap Velos; LTQ Orbitrap Velos Uzozie et al. (2014) Anuli Uzozie PD Dr. Giancarlo Marra 2014-04-03
PXD000170 Identifying sources of tick blood meals using unidentified tandem mass spectral libraries PRIDE Panthera leo , Macropus rufus (Red kangaroo) (Megaleia rufa), Alligator mississippiensis (American alligator), Capra hircus , Colobus guereza (Mantled guereza) (Eastern black-and-white colobus monkey), Strix varia (Barred owl), Eryx colubrinus loveridgei, LCQ Classic Önder Ö et al. (2013) Henry Lam 2014-04-03
PXD000775 Lactate racemase proteins MALDI TOF/TOF PRIDE Lactobacillus plantarum 4800 Proteomics Analyzer Desguin et al. (2014) Pascal Hols MORSOMME Pierre 2014-04-02
PXD000851 Membrane proteomic analysis of colorectal cancer tissue PRIDE Homo sapiens LTQ Orbitrap Kume et al. (2014) Hideaki Kume Takeshi Tomonaga 2014-04-02
PXD000218 System-level analysis of cancer and stomal cell specific proteomes reveals extensive reprogramming of phosphorylation networks by tumor microenvironment PRIDE Homo sapiens , Mus musculus LTQ Orbitrap; instrument model: LTQ Orbitrap Rajeeve et al. (2014) Vinothini Rajeeve 2014-04-02
PXD000510 Synechococcus elongatus PCC7942 proteome's cyclic rhythm by LC-MSMS PRIDE Synechococcus elongatus (strain PCC 7942) (Anacystis nidulans R2) LTQ Orbitrap Velos Guerreiro et al. (2014) Ana C. Guerreiro Albert J.R. Heck 2014-04-02
PXD000540 Wheat leaf phosphoproteome PRIDE Triticum aestivum LTQ Orbitrap Lv et al. (2014) Dong-Wen Lv Yue-Ming Yan 2014-04-01
PXD000864 Label-free based proteomic study of Thermoanaerobacter tengcongensis PRIDE Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Caldanaerobacter subterraneus subsp. tengcongensis) LTQ Orbitrap Velos Dataset with its publication pending Bo Wen Bo Wen 2014-04-01
PXD000433 Quantitative phosphoproteomics of Phytophthora infestans life stages PRIDE Phytophthora infestans instrument model: LTQ Orbitrap XL; LTQ Orbitrap XL Resjö et al. (2014) Svante Resjo 2014-03-27
PXD000090 Bombyx mori anterior silk gland LC-MS/MS PRIDE Bombyx mori (Silk moth) LTQ Orbitrap; instrument model: LTQ-Orbitrap Yi et al. (2013) qiying yi 2014-03-26
PXD000379 DJ-1 as high-fat diet associated protein PRIDE Mus musculus HCTultra; LTQ Orbitrap Elite Poschmann et al. (2014) Gereon Poschmann 2014-03-26
PXD000854 Protein validation of Geobacter Sulfurreducens PRIDE Geobacter sulfurreducens LTQ Orbitrap Dataset with its publication pending Matthew Monroe Richard D. Smith 2014-03-20
PXD000556 E. coli BW25113 and knock-out mutants (delta-pka, delta-arcA and delta-pka_arcA) LC MS/MS PRIDE Escherichia coli, Acyrthosiphon pisum (Pea aphid) LTQ Orbitrap Peebo et al. (2014) Karl Peebo 2014-03-19
PXD000847 Mouse plasma QSRM (Whiteaker et al.) PeptideAtlas Mus musculus 4000 Q-Trap Whiteaker et al. (2011) Terry Farrah Amanda Paulovich 2014-03-18
PXD000846 Human CAP urine (Huettenhain et al.) PeptideAtlas Homo sapiens TSQ Vantage Hüttenhain et al. (2012) Ruth Hüttenhain Ruedi Aebersold 2014-03-18
PXD000845 ATAQS T-47D cell line PeptideAtlas Homo sapiens 4000 Q-Trap Brusniak et al. (2011) Terry Farrah Ruedi Aebersold 2014-03-18
PXD000844 UVic top 45 plasma 2008 (Letarte) PeptideAtlas Homo sapiens 4000 Q-Trap no publication Terry Farrah Ruedi Aebersold 2014-03-18
PXD000843 MRM verification of serum protein biomarkers differentially expressed in Active Tuberculosis in HIV- and HIV+ Individuals (All centers - part 1) PeptideAtlas Homo sapiens QTRAP 5500 no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000842 MRM qualification of serum protein biomarkers differentially expressed in Active Tuberculosis in HIV- and HIV+ Individuals (Brazil) PeptideAtlas Homo sapiens QTRAP 5500 no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000841 MRM qualification of serum protein biomarkers differentially expressed in Active Tuberculosis in HIV- and HIV+ Individuals (US) PeptideAtlas Homo sapiens QTRAP 5500 no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000833 MRM qualifcation of secreted proteins in Brucella-infected/non-infected trophoblast cell lines PeptideAtlas Homo sapiens 4000 Q-Trap no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000840 MRM qualifcation of secreted proteins differentially expressed in Brucella-infected macrophage cells vs non-infected macrophage cells PeptideAtlas Homo sapiens 4000 Q-Trap no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000832 MRM Qualification of Biomarkers of Immunogenicity and Response Prediction of Influenza A H1N1 Vaccine PeptideAtlas Homo sapiens QTRAP 5500 no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000831 MRM Qualification of Biomarkers of Immunogenicity and Response Prediction of Influenza A H5N1 Vaccine PeptideAtlas Homo sapiens QTRAP 5500 no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000830 MRM qualification of plasma/serum protein biomarkers for progression from MTB infection to disease PeptideAtlas Homo sapiens QTRAP 5500 no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000829 MRM verification of plasma/serum protein biomarkers for progression from MTB infection to disease PeptideAtlas Homo sapiens QTRAP 5500 no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000827 MRM verification of serum protein biomarkers differentially expressed in Active Tuberculosis in HIV- and HIV+ Individuals (All centers - part 2) PeptideAtlas Homo sapiens QTRAP 5500 no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000825 MRM Verification of serum protein biomarkers for brucellosis treatment PeptideAtlas Homo sapiens QTRAP 5500 no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000826 MRM qualification of serum proteinMRM qualification of serum protein biomarkers differentially expressed in Active Tuberculosis in HIV- and HIV+ Individuals (South Africa center) PeptideAtlas Homo sapiens QTRAP 5500 no publication Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000824 MRM qualifcation of serum protein biomarkers for brucellosis treatment PeptideAtlas Homo sapiens 4000 Q-Trap Unpublished Eustache Paramithiotis Eustache Paramithiotis 2014-03-18
PXD000603 Lung cancer and Normal Lung Tissue LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Ahn et al. (2014) Je-Yoel Cho 2014-03-18
PXD000178 Cotton Fiber Glycoproteome PRIDE Gossypium ultraflex Kumar et al. (2013) Saravanan Kumar 2014-03-18
PXD000272 Low abundance of the matrix arm of complex I in the mitochondria predicts longevity PRIDE Mus musculus LTQ Orbitrap Miwa et al. (2014) Achim Treumann 2014-03-18
PXD000769 Colon cancer stem cell over-expressing Np63α PRIDE Homo sapiens micrOTOF II D'Aguanno et al. (2014) Simona D'Aguanno Prof. Andrea Urbani 2014-03-17
PXD000768 Colon cancer stem cell over-expressing TAp63α PRIDE Homo sapiens micrOTOF II D'Aguanno et al. (2014) Simona D'Aguanno Prof. Andrea Urbani 2014-03-17
PXD000620 Cervico-Vaginal mucus proteins of buffalo PRIDE Bubalus bubalis Thermo Electron instrument model Muthukumar et al. (2014) Subramanian Muthukumar G Archunan 2014-03-17
PXD000821 In vivo SILAC-based proteomics reveals phosphoproteome changes during mouse skin carcinogenesis PRIDE Mus musculus LTQ Orbitrap Velos; LTQ Orbitrap Elite Zanivan et al. (2013) Sara Zanivan Sara Zanivan 2014-03-13
PXD000678 A Proteomic Chronology of Gene Expression through the Cell Cycle in Human Myeloid Leukemia Cells. PRIDE Homo sapiens LTQ Orbitrap Velos; Q Exactive Ly et al. (2014) Vackar Afzal Prof Angus Lamond 2014-03-12
PXD000694 Proteomic analysis of Giardia lamblia ESV and PV organelle enriched fractions PRIDE Giardia intestinalis (strain ATCC 50803 / WB clone C6) (Giardia lamblia) LTQ Orbitrap Wampfler et al. (2014) Adrian Hehl Adrian B. Hehl 2014-03-11
PXD000206 4-plex iTRAQ comparative proteomics Anabaena circinalis PRIDE Dolichospermum circinale AWQC310F, Dolichospermum circinale AWQC131C QSTAR D'Agostino et al. (2014) Paul D'Agostino 2014-03-11
PXD000600 Temporal dynamics of protein synthesis and secretion during LPS activation of macrophages PRIDE Mus musculus LTQ Orbitrap Velos Eichelbaum & Krijgsveld (2014) Katrin Eichelbaum 2014-03-07
PXD000686 Tousled-like kinases phosphorylate Asf1 to promote histone supply during DNA replication PRIDE Homo sapiens LTQ Orbitrap Klimovskaia et al. (2014) Clifford Young Ole Nørregaard Jensen 2014-03-06
PXD000363 PG-regulated Synechocystis sp. PCC6803 PRIDE Synechocystis sp., Synechocystis sp. PCC 6803 LTQ FT; instrument model: LTQ FT; instrument model: LTQFT Talamantes et al. (2014) Laszlo Prokai 2014-03-06
PXD000181 Short cationic antimicrobial peptide RWRWRW-NH2 inhibits cell wall biosynthesis and bacterial respiration by delocalizing essential membrane proteins PRIDE Bacillus subtilis (strain 168) LTQ Orbitrap Dataset with its publication pending Andreas Otto 2014-03-06
PXD000618 Characterization of the proteome of human blood platelet sercretory granules using gas-phase fractionation (GPF) PRIDE Homo sapiens LTQ Orbitrap Velos Zufferey et al. (2014) Pierre Fontana Pierre Fontana 2014-03-06
PXD000348 ESI-LC-MS/MS of magnetosome membrane enclosing magnetite particles of Rhodospirillum rubrum_ABG6X PRIDE Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) LTQ Orbitrap; instrument model: LTQ Orbitrap Kolinko et al. (2014) Isabel Kolinko 2014-03-05
PXD000356 Mass spectrometric analysis of Podospora anserina mitochondria PRIDE Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) LTQ Orbitrap Plohnke et al. (2014) Nicole Plohnke 2014-03-05
PXD000046 Mouse Cerebellum DNA-Damage 2D LC-MS/MS PRIDE Mus musculus LTQ Orbitrap Velos de Graaf et al. (2013) Erik L. de Graaf 2014-03-05
PXD000226 Human Uterine Smooth Muscle S-nitrosoproteome PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Ulrich et al. (2013) Craig Ulrich 2014-03-03
PXD000479 Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis PRIDE Danio rerio (Brachydanio rerio) 6520 Quadrupole Time-of-Flight LC/MS; LTQ Orbitrap Velos Kelkar et al. (2014) Akhilesh Pandey 2014-02-26
PXD000738 SILAC-based proteomic quantification of chemoattractant induced cytoskeleton dynamics on a second to minute timescale PRIDE Dictyostelium discoideum (Slime mold) LTQ Orbitrap Velos Sobczyk, Wang & Weijer (2014) Vackar Afzal Cornelis J Weijer 2014-02-26
PXD000173 Immunoprecipitated proteins associated with foci-forming Eno2p-EGFP-FLAG or non-forming Eno2V22Ap-EGFP-FLAG in yeast Saccharomyces cerevisiae under hypoxia PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Miura et al. (2013) Mitsuyoshi Ueda 2014-02-25
PXD000177 Quantitative Phosphoproteomics after auxin-stimulated lateral root induction PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap XL Zhang et al. (2013) Hongtao Zhang 2014-02-25
PXD000434 Erythrocyte Proteome & Terminome PRIDE Homo sapiens LTQ Orbitrap Lange et al. (2014) Philipp Lange 2014-02-24
PXD000511 Cdh1 Proteomic Analysis PRIDE Mus musculus LTQ Orbitrap Velos Eguren et al. (2014) Fernando Garcia 2014-02-20
PXD000337 N-terminal-oriented proteogenomics for the marine bacterium Roseobacter denitrificans PRIDE Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans) LTQ Orbitrap Bland et al. (2014) Jean ARMENGAUD 2014-02-19
PXD000493 Proteomics dataset for interphase chromatin probabilities PRIDE Homo sapiens LTQ Orbitrap; LTQ Orbitrap Velos Kustatscher et al. (2014) Georg Kustatscher Juri Rappsilber 2014-02-18
PXD000682 Transcriptomic and Proteomic Response of HC-04 to hepatocyte growth factor (HGF) PRIDE Homo sapiens 6520 Quadrupole Time-of-Flight LC/MS Tao et al. (2014) Dingyin Tao Rhoel R. Dinglasan 2014-02-18
PXD000354 Rat cardiac mitochondrial proteome and phosphoproteome PRIDE Rattus norvegicus instrument model: LTQ Orbitrap VelosPro Ferreira et al. (2014) Francesco Mattia Mancuso 2014-02-14
PXD000675 A Targeted in Vivo SILAC Approach for Quantification of Drug Metabolism Enzymes: Regulation by the Constitutive Androstane Receptor PRIDE Mus musculus LTQ Orbitrap Macleod et al. (2014) Kenneth MacLeod Jeffrey Tze-Jen Huang 2014-02-14
PXD000581 Combined Proteomic and Transcriptomic Interrogation of the Venom Gland of Conus geographus PRIDE Conus geographus (Geography cone) (Nubecula geographus) instrument model: Ultraflex III MALDI TOF/TOF Safavi-Hemami et al. (2014) Paul Veith 2014-02-14
PXD000460 Pithovirus particle proteome PRIDE unidentified instrument model: LTQ-Orbitrap Velos pro; LTQ Orbitrap Velos Legendre et al. (2014) Yohann Coute 2014-02-13
PXD000401 Human CSF LC-MS PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Elise Aasebo 2014-02-13
PXD000604 Differentially expressed proteins in benign and malignant adrenocortical tumors PRIDE Homo Sapiens LTQ Orbitrap Kjellin et al. (2014) Hanna Kjellin 2014-02-11
PXD000597 Quantitative phosphoproteomics unveils temporal dynamics of thrombin signaling in human endothelial cells PRIDE Homo sapiens LTQ Orbitrap Elite van den Biggelaar et al. (2014) Sara Zanivan Sara Zanivan 2014-02-07
PXD000745 Quantification of ErbB network proteins in three cell types PeptideAtlas Homo sapiens TSQ Vantage; QTRAP 5500 Kiel et al. (2014) H. Alexander Ebhardt Ruedi Aebersold 2014-02-06
PXD000507 Acetylation Dynamics and Stoichiometry in Saccharomyces cerevisiae PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos; Q Exactive Weinert et al. (2014) Brian Weinert 2014-02-03
PXD000072 High precision platelet releasate definition by quantitative reversed protein profiling PRIDE Homo sapiens instrument model: LTQ Orbitrap Velos; LTQ Orbitrap Velos Wijten et al. (2013) Patrick Wijten 2014-02-03
PXD000202 Archael ubiquitin-like SAMP3 is isopeptide-linked to Proteins by an UbaA-dependent mechanism PRIDE Haloferax volcanii (Halobacterium volcanii) LTQ Orbitrap Velos Miranda et al. (2014) Haike Antelmann 2014-02-03
PXD000410 Peatland Soil Community Proteomics PRIDE unidentified soil organism LTQ Orbitrap Elite Dataset with its publication pending Eun-Hae Kim 2014-02-03
PXD000450 HLA-B40-peptidome PRIDE Homo Sapiens TripleTOF 5600; instrument model: TripleTOF 5600 Marcilla et al. (2014) Miguel Marcilla 2014-02-03
PXD000269 Minimalistic sample processing PRIDE Schizosaccharomyces pombe (Fission yeast), Homo sapiens , Saccharomyces cerevisiae (Baker's yeast) Q Exactive Dataset with its publication pending Mario Oroshi 2014-01-31
PXD000306 Proteomic identification of rainbow trout seminal plasma proteins PRIDE Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri) instrument model: LTQ; LTQ Nynca et al. (2014) Joanna Nynca 2014-01-31
PXD000196 Shotgun proteomics of nucleoids from irradiated Deinococcus cells PRIDE Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923), Deinococcus radiodurans LTQ Orbitrap; instrument model: LTQ-Orbitrap de la Tour et al. (2013) Jean ARMENGAUD 2014-01-31
PXD000535 CHPP chr 1,8,20 proteome dataset using the HCC cell lines of Hep3B and MHCC97H, instrument is AB5600, part 3 of 3 PRIDE Homo sapiens instrument model: AB 5600 Liu et al. (2014) Zhang Chengpu Zhang Chengpu 2014-01-31
PXD000203 Mouse splenocyte proteome PRIDE Mus musculus LTQ Orbitrap Velos Cao & Robinson (2014) Zhiyun Cao 2014-01-31
PXD000487 A proteome analysis of Bradyrhizobium japonicum USDA 110 grown in minimal medium containing arabinose suggests that oxalate oxidation extends the arabinose degradation branch via glycolaldehyde. PRIDE Bradyrhizobium japonicum (strain USDA 110) LTQ Orbitrap Koch et al. (2014) Ulrich Omasits 2014-01-30
PXD000400 Identification of differentially expressed proteins in direct expressed prostatic secretions of men with organ-confined versus extracapsular prostate cancer. PRIDE Homo sapiens LTQ Orbitrap Kim et al. (2012) Thomas Kislinger 2014-01-30
PXD000713 Plant SILAC: Stable-Isotope Labelling with Amino Acids of Arabidopsis Seedlings for Quantitative Proteomics. PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Lewandowska et al. (2013) Vackar Afzal Prof Angus Lamond 2014-01-30
PXD000022 C2C12 Myoblasts and Myotubes exosomes PRIDE Mus musculus , Bos taurus , Equus caballus LTQ Orbitrap Forterre et al. (2014) Yohann Couté 2014-01-29
PXD000427 Human substantia nigra proteome dataset PRIDE Homo sapiens LTQ Orbitrap Velos Licker et al. (2014) L Virginie 2014-01-29
PXD000149 The potato tuber mitochondrial proteome PRIDE Solanum tuberosum LTQ Orbitrap Salvato et al. (2014) Jay J Thelen 2014-01-29
PXD000221 Proteins from Outer Membrane Vesicules of Pseudomonas syringae Lz4W PRIDE Pseudomonas sp. LTQ Orbitrap Velos Kulkarni, Swamy ChV & Jagannadham (2014) Jagannadham Medicharla V 2014-01-29
PXD000643 Human glomerular cell-derived extracellular mantrix PRIDE Homo sapiens LTQ Orbitrap Velos Byron et al. (2014) Rachel Lennon 2014-01-29
PXD000316 A Saccharomyces Cerevisiae model reveals in vivo functional impairment of the ogden syndrome n-terminal acetyltransferase Naa10-S37p mutant PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap; instrument model: LTQ-Orbitrap Van Damme et al. (2014) Pieter-Jan De Bock 2014-01-29
PXD000412 Human dental calculus LC-MS/MS PRIDE Homo sapiens , Ovis, Bos taurus LTQ Orbitrap Velos; Q Exactive; maXis Warinner et al. (2014) Christina Warinner Christina G Warinner 2014-01-29
PXD000492 CDK regulated chicken chromatin PRIDE Gallus gallus LTQ Orbitrap Kustatscher et al. (2014) Georg Kustatscher Juri Rappsilber 2014-01-29
PXD000314 Sequential Phosphoproteomic Enrichment by Complementary Metal-directed Immobilized Metal Ion Affinity Chromatography: Case Study on Kinase Substrate Mapping in Human Lung Cancer Tissue PRIDE Homo sapiens instrument model: TT5600 Tsai et al. (2014) Chia-Feng Tsai 2014-01-29
PXD000711 Comparative proteomics of two life cycle stages of stable isotope-labeled Trypanosoma brucei reveals novel components of the parasite's host adaptation machinery. PRIDE Trypanosoma brucei LTQ Orbitrap; Q Exactive Ericson et al. (2014)Butter et al. (2013) F Butter Matthias Mann 2014-01-28
PXD000421 PAPE - Pre-fractionation assisted phosphoprotein enrichment, a novel approach for phosphoproteomic analysis of green tissues from plants PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Dataset with its publication pending Ines Lassowskat 2014-01-28
PXD000638 Proteomic analysis of the thermophilic methylotroph Bacillus methanolicus MGA3: 50°C versus 37°C PRIDE Bacillus methanolicus LTQ Orbitrap; instrument model: LTQ Orbitrap Müller et al. (2014) Miriam Bortfeld-Miller 2014-01-28
PXD000637 Proteomic analysis of the thermophilic methylotroph Bacillus methanolicus MGA3 PRIDE Bacillus methanolicus LTQ Orbitrap; instrument model: LTQ Orbitrap Müller et al. (2014) Miriam Bortfeld-Miller 2014-01-28
PXD000438 Super-SILAC analysis of human lung primary tumor-derived xenografts LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Elite Zhang et al. (2014) Wen Zhang 2014-01-28
PXD000494 Lactococcus lactis protein turnover PRIDE Lactococcus lactis subsp. lactis (strain IL1403) (Streptococcus lactis) LTQ Orbitrap Dataset with its publication pending Liisa Arike 2014-01-28
PXD000383 QUEST-MS for plasma biomarkers complementing the specificity of PSA test PRIDE Homo sapiens instrument model: LTQ-Orbitrap-Velos Ueda et al. (2013) Koji Ueda 2014-01-28
PXD000674 PeptideShaker PRIDE Homo sapiens Q Exactive Dataset with its publication pending Marc Vaudel Lennart Martens 2014-01-27
PXD000191 Phaeodactylum tricornutum oxidative stress PRIDE Phaeodactylum tricornutum Synapt MS Rosenwasser et al. (2014) Yishai Levin 2014-01-23
PXD000695 In-depth proteomic analyses of ovarian cancer cell line exosomes reveals differential enrichment of functional categories compared to the NCI 60 proteome. PRIDE Homo sapiens Q Exactive Sinha et al. (2014) Thomas Kislinger Thomas Kislinger 2014-01-23
PXD000647 Functional analysis of novel Rab GTPases identified in the proteome of 2 purified Legionella-containing vacuoles from macrophages PRIDE Dictyostelium discoideum (Slime mold), Mus musculus , Legionella pneumophila LTQ Orbitrap Velos Dataset with its publication pending Andreas Otto 2014-01-23
PXD000377 Proteomic analysis of purified protein derivative of mycobacterium tuberculosis PRIDE Mycobacterium tuberculosis H37Rv LTQ Orbitrap Prasad et al. (2013) Akhilesh Pandey 2014-01-23
PXD000456 Human glomerular extracellular matrix analysed by LC-MSMS PRIDE Homo sapiens LTQ Orbitrap Velos Lennon et al. (2014) Rachel Lennon 2014-01-22
PXD000424 Unraveling the Neospora caninum secretome by high-resolution mass spectrometry-based proteomics PRIDE Neospora caninum (Coccidian parasite) LTQ Orbitrap; LTQ Orbitrap Velos Pollo-Oliveira et al. (2013) Henk W.P. van den Toorn 2014-01-20
PXD000198 Differential proteomics-based identification by MALDI-MSMS and nLC-MSMS of biomarkers in serum of patients with glaucoma PRIDE Homo sapiens autoflex; LTQ Orbitrap Elite Dataset with its publication pending Hector Gonzalez-Iglesias 2014-01-17
PXD000531 Human pleural effusion LC-MSMS PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Filip Mundt 2014-01-14
PXD000255 Label-free analysis of EAE vs Sham Spinal cord and PBMCs PRIDE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending L Dagley 2014-01-13
PXD000260 Human triple negative breast cancer tissues PRIDE Homo sapiens LTQ Orbitrap Liu et al. (2014)Liu et al. (2014) Ning Qing Liu 2014-01-13
PXD000658 Global phosphoproteomic profiling reveals distinct signatures in B-cell non-Hodgkin lymphomas PRIDE Homo sapiens LTQ Orbitrap XL Rolland et al. (2014) Damian Fermin 2014-01-09
RPXD000669 Reprocessed: Proteomic and phosphoproteomic data of colorectal cancer tissues and cells for Chromosome-Centric Human Proteome Project PeptideAtlas Homo sapiens LTQ Orbitrap Velos no publication Zhi Sun Eric Deutsch 2013-12-23
RPXD000668 Reprocessed: LC-MS/MS of cultured Mycobacterium tuberculosis in a hypoxia/reaeration timecourse PeptideAtlas Mycobacterium tuberculosis LTQ Orbitrap no publication Zhi Sun Eric Deutsch 2013-12-23
RPXD000667 Reprocessed: Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives PeptideAtlas Mus musculus LTQ Orbitrap Velos no publication Zhi Sun Eric Deutsch 2013-12-23
RPXD000665 Reprocessed: In-depth membrane proteomic study of breast cancer tissues PeptideAtlas Homo sapiens LTQ Orbitrap Velos no publication Zhi Sun Eric Deutsch 2013-12-20
PXD000569 S-nitrosylation in Chlamydomonas reinhardtii PRIDE Chlamydomonas reinhardtii (Chlamydomonas smithii) LTQ Orbitrap Velos Morisse et al. (2014) Christophe MARCHAND 2013-12-19
PXD000367 Proteomic analysis of outer membrane vesicles from the probiotic strain Escherichia coli Nissle 1917 PRIDE Escherichia coli Nissle 1917 LTQ Orbitrap Velos Aguilera et al. (2014) Eliandre de Oliveira 2013-12-19
PXD000405 Ndd1 phosphorylation pattern upon DNA damage PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Velos Dataset with its publication pending Dorothea Anrather 2013-12-19
PXD000533 CHPP chr 1,8,20 proteome dataset using the HCC cell lines of Hep3B and MHCC97H, instrument is Q Exactive, part 2 of 3 PRIDE Homo sapiens instrument model: Q-Exactive Liu et al. (2014) Zhang Chengpu Zhang Chengpu 2013-12-19
PXD000623 Quantification of ErbB network proteins in three cell types using complementary approaches identifies cell general and cell type-specific signaling proteins PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Kiel et al. (2014) H. Alexander Ebhardt 2013-12-18
PXD000470 Proteome analysis of Brachypodium distachyon leaf under salt stress and recovery PRIDE Brachypodium distachyon (Purple false brome) (Trachynia distachya) 4800 Proteomics Analyzer Lv et al. (2014) Dong-Wen Lv 2013-12-17
PXD000340 Brachypodium distachyon three leaf stage LC-MSMS PRIDE Brachypodium distachyon (Purple false brome) (Trachynia distachya) LTQ Orbitrap Dataset with its publication pending Dong-Wen Lv 2013-12-17
RPXD000650 Reprocessed: Mycobacterium tuberculosis culture filtrate LC-MS/MS PeptideAtlas Mycobacterium tuberculosis H37Rv LTQ FT no publication Zhi Sun Eric Deutsch 2013-12-16
PXD000529 CHPP chr 1,8,20 proteome dataset using the HCC cell lines of MHCC97H and HCCLM3, instrument is Q Exactive, part 1 of 3 PRIDE Homo sapiens instrument model: Q-Exactive Liu et al. (2014) Zhang Chengpu Zhang Chengpu 2013-12-13
PXD000307 Comparison of phenotypically distinct lattice corneal dystrophies reveals similar plaque proteomes and suggests altered proteolytic turnover rates of the transforming growth factor beta-induced protein (TGFBIp) PRIDE Homo sapiens instrument model: TripleTof 5600 AB Sciex Dataset with its publication pending Ebbe Toftgaard Poulsen 2013-12-13
PXD000160 Soybean root tip proteins under flooding with ABA PRIDE Glycine max (Glycine hispida) LTQ Orbitrap; instrument model: LTQ Orbitrap Dataset with its publication pending Yohei Nanjo 2013-12-13
PXD000503 Time-resolved substrate degradomics PRIDE Mus musculus LTQ Orbitrap; LTQ Orbitrap Velos Schlage et al. (2014) Ulrich auf dem Keller 2013-12-13
PXD000234 Proteomic analysis of serum from Chikungunya patients PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Akhilesh Pandey 2013-12-12
PXD000201 Proteomic Change Associated with Flooding Injury of Soybean PRIDE Glycine max (Glycine hispida) LTQ Orbitrap; instrument model: LTQ Orbitrap Dataset with its publication pending Yohei Nanjo 2013-12-11
PXD000538 A novel pulse-chase SILAC strategy measures changes in protein decay and synthesis rates induced by perturbation of proteostasis with an Hsp90 inhibitor. PRIDE Homo sapiens LTQ Orbitrap Velos Fierro-Monti et al. (2013) Manfredo Quadroni 2013-12-10
PXD000537 Dynamic impacts of the inhibition of the molecular chaperone Hsp90 on the T-cell proteome have implications for anti-cancer therapy. PRIDE Homo sapiens LTQ Orbitrap Velos Fierro-Monti et al. (2013) Manfredo Quadroni 2013-12-10
PXD000375 Global analysis of Cdc14 dephosphorylation sites reveals essential regulatory role in mitosis and cytokinesis PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap; instrument model: LTQ Orbitrap Kao et al. (2014) Chia-Feng Tsai 2013-12-10
PXD000312 Mercury Uniquely Alters B-Cell Protein Phosphorylation Profiles PRIDE Mus musculus instrument model: LTQ; LTQ Dataset with its publication pending Nicholas Carruthers 2013-12-10
PXD000622 Biomarker discovery for lung nodules PeptideAtlas Homo sapiens QTRAP 5500 Li et al., submitted Lik Wee Lee Paul Kearney 2013-12-05
PXD000303 Evaluation of drift time specific collision energies PRIDE Homo sapiens Q Exactive; Synapt MS Dataset with its publication pending Ute Distler 2013-12-05
PXD000584 Shotgun Imaging Analyzer Gastric Cancer PRIDE Homo sapiens LTQ Orbitrap Velos Aquino et al. (2014) Paulo Carvalho 2013-12-05
PXD000602 UPS1 and UPS2 proteins diluted in E. coli PRIDE Escherichia coli LTQ Velos; LTQ; LTQ Orbitrap Velos Krey et al. (2014) Peter Gillespie 2013-12-05
PXD000578 Mass spectrometry-based quantitative proteomics of whole cell lysate from breast cancer cell line MCF7 spiked with 57 protein standards PRIDE Homo Sapiens LTQ Orbitrap Dataset with its publication pending AnnSofi Sandberg 2013-12-03
PXD000614 Investigation of proximal phosphorylation and lysine acetylation crosstalk PeptideAtlas Rattus norvegicus QTRAP 5500 no publication Benjamin Parker David E. James 2013-12-02
PXD000455 Drosophila melanogaster proteome dataset with high coverage of the genome based on the LC-MS/MS platform PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap; instrument model: LTQ Orbitrap Xing et al. (2014) Zhang Chengpu 2013-12-02
PXD000242 Iloprost (2/5 nM) stimulated Platelets PRIDE Homo sapiens LTQ Orbitrap Velos Dataset with its publication pending Florian Beck 2013-12-02
PXD000451 Phosphoproteomic analysis of platelets activated by pro-thrombotic oxidized phospholipids and thrombin PRIDE Homo sapiens LTQ Orbitrap Zimman et al. (2014) Bjoern Titz 2013-12-02
PXD000192 Developing Soybean Seed Lysine-N-epsilon-acetylome PRIDE Glycine max (Glycine hispida) LTQ Orbitrap Smith-Hammond et al. (2014) Colin Smith-Hammond 2013-12-02
PXD000131 Integrative genome, transcriptome and proteome analysis of rat livers from two different genetic backgrounds PRIDE Rattus norvegicus LTQ Orbitrap Velos; TripleTOF 5600 Low et al. (2013) Teck Yew Low 2013-11-29
PXD000545 Photosynthetic Megacomplex in Synechosystis 6803 PRIDE Synechocystis sp. PCC 6803 LTQ Orbitrap Dataset with its publication pending Hao Zhang 2013-11-29
PXD000252 Granzyme M targets topoisomerase II alpha to trigger cell cycle arrest and caspase-dependent apoptosis in cancer cells PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Dataset with its publication pending Pieter-Jan De Bock 2013-11-27
PXD000210 Proteome analysis by charge state-selective separation of peptides: a multidimensional approach PRIDE Mus musculus , Mus musculus (house mouse) LTQ Orbitrap; instrument model: LTQ-Orbitrap; instrument model: LTQ Orbitrap Dataset with its publication pending Pieter-Jan De Bock 2013-11-27
PXD000152 Conservation of the extended substrate specificity profiles among homologous granzymes across species PRIDE Mus musculus instrument model: QToF Global; Waters instrument model Plasman et al. (2013) Pieter-Jan De Bock 2013-11-27
PXD000563 Integrated Chromosome 19 Transcriptomic and Proteomic Datasets Derived from Six Glioma-Derived Cancer Stem Cell Lines PRIDE Homo sapiens LTQ Orbitrap Elite Lichti et al. (2014) HL Liu 2013-11-27
PXD000243 Telomeric protein composition deriving from q-TIP analysis comparing Hela supertelomerase cells, Hela TRF2 knockdown cells or Hela POT1 knockdown cells with Hela control cells, proteomes by 2D-LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Elite Dataset with its publication pending Romain Hamelin 2013-11-26
PXD000454 Drosophila melanogaster iTRAQ HCD dataset PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap; instrument model: LTQ Orbitrap Xing et al. (2014) Zhang Chengpu 2013-11-25
PXD000596 Probing the complementarity of FAIMS and strong cation exchange chromatography in shotgun proteomics PRIDE Homo sapiens LTQ Orbitrap Velos Creese et al. (2013) Andrew Creese 2013-11-22
PXD000327 Quantitative proteomic profiling reveals novel region-specific markers in the adult mouse brain PRIDE Mus musculus LTQ Orbitrap Velos Dagley et al. (2014) L Dagley 2013-11-22
PXD000483 Mycobacterium tuberculosis under starvation PRIDE Mycobacterium tuberculosis H37Rv LTQ Orbitrap Cortes et al. (2013) Olga Schubert 2013-11-22
PXD000238 Phosphoproteomic Analysis of Lethal Castration Resistant Prostate Cancer Reveals Patient but not Metastatic Site Heterogeneity of Tyrosine Kinase Activation PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending Nicholas Graham 2013-11-21
PXD000273 Quantitative proteomics reveals the role of arginine phosphorylation in bacterial stress response PRIDE Bacillus subtilis subsp. subtilis str. 168 LTQ Orbitrap Velos; Q Exactive Schmidt et al. (2014) Andreas Schmidt 2013-11-21
PXD000489 A pair of centromeric proteins mediates reproductive isolation in Drosophila species PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap Thomae et al. (2013) Andreas Thomae 2013-11-20
PXD000387 LC-MS/MS of gingiva and Periodontal ligaments PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Dataset with its publication pending Kari Green 2013-11-18
PXD000331 Critical assessment of proteome-wide label-free absolute abundance estimation strategies PRIDE Homo sapiens , Mycoplasma pneumoniae, Leptospira interrogans, Drosophila melanogaster (Fruit fly) LTQ Orbitrap Velos Ahrné et al. (2013) Alexander Schmidt 2013-11-15
PXD000341 Site-specific quantitation of TCR-induced phosphorylation in Jurkat T cell lines PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending Mogjib SALEK 2013-11-15
PXD000478 Transcriptome and proteome quantification of a tumor model provides novel insights into post-transcriptional gene regulation PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap Velos Jüschke et al. (2013) Christoph Jüschke 2013-11-14
PXD000575 Mouse Acrosomal Matrix LC-MS/MS PRIDE Mus musculus LTQ XL Guyonnet et al. (2012) Dr Gail A Cornwall 2013-11-14
PXD000461 Identification of telomere-binding proteins by enChIP-MS PRIDE Mus musculus LTQ Orbitrap Velos; instrument model: LTQ Orbitrap velos Fujita et al. (2013) Kazunobu Saito 2013-11-12
PXD000429 The Aeromonas salmonicida subsp. salmonicida exoproteome. PRIDE Aeromonas salmonicida salmonicida instrument model: ESI-LTQ-Orbitrap Vanden Bergh et al. (2013) Cedric Simillion 2013-11-11
PXD000360 3xMBT pull-down from wild-type and Rkm1 knock-out yeast PRIDE Saccharomyces cerevisiae (Baker's yeast) LTQ Orbitrap Elite Dataset with its publication pending Scott Carlson 2013-11-11
PXD000361 3xMBT protein pull-down PRIDE Homo sapiens LTQ Orbitrap Velos; Q Exactive; LTQ Orbitrap Elite Moore et al. (2013) Scott Carlson 2013-11-11
PXD000280 Arabidopsis thaliana Cytochrome c Novel Partners Identification by LTQ PRIDE Arabidopsis thaliana (Mouse-ear cress) instrument model: LTQ; LTQ Dataset with its publication pending Jonathan Martinez Fabregas 2013-11-11
PXD000440 Qualitatively Different T Cell Phenotypic Responses to IL-2 versus IL-15 are Unified by Identical Dependences on Receptor Signal Strength and Duration PRIDE Homo sapiens instrument model: Orbitrap Elite CID/HCD Arneja et al. (2014) Hannah Johnson 2013-11-07
PXD000355 Proteomic identification of rainbow trout sperm proteins PRIDE Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri) instrument model: LTQ; LTQ Nynca et al. (2014) Joanna Nynca 2013-11-05
PXD000423 Resolution of the type material of the Asian elephant, Elephas maximus (Proboscidea: Elephantidae) Linnaeus, 1758 PRIDE Loxodonta africana (African elephant) Q Exactive Dataset with its publication pending Enrico Cappellini 2013-11-04
PXD000553 Polysome profiling reveals translational control of gene expression in the human malaria parasite Plasmodium falciparum PRIDE Plasmodium falciparum LTQ Bunnik et al. (2013) Anita Saraf 2013-10-31
PXD000162 Hypoxia-induced Changes in the Secretome of Human Preadipocytes and Adipocytes PRIDE Homo sapiens 4800 Proteomics Analyzer; instrument model: absciex 4800; instrument model: IonTrap XCT Ultra Rosenow et al. (2013) Jean-Paul Noben 2013-10-29
PXD000053 Lotus japonicus phosphopeptide PRIDE Lotus japonicus LTQ Orbitrap; instrument model: LTQ Orbitrap Ino et al. (2014) Yoko Ino 2013-10-29
PXD000426 Asn3 mass accuracy jurkat proteome PRIDE Homo sapiens instrument model: LTQ-Orbitrap Velos; LTQ Orbitrap Velos Staes et al. (2013) An Staes 2013-10-22
PXD000403 Sphingomonas wittichii RW1 shotgun proteomics PRIDE Sphingomonas wittichii LTQ Orbitrap; instrument model: LTQ Orbitrap Hartmann & Armengaud (2014) Jean ARMENGAUD 2013-10-22
PXD000524 Modified cytosine binding proteins PRIDE Mus musculus LTQ Orbitrap Velos Dataset with its publication pending David Oxley 2013-10-21
PXD000345 Proteomic analysis of the global response of an arthropod Wolbachia symbiont to doxycycline-induced stress PRIDE Wolbachia sp. wMelPop LTQ Orbitrap Velos; instrument model: LTQ Orbitrap velos; instrument model: Thermo Orbitrap Velos Dataset with its publication pending Stuart Armstrong 2013-10-21
PXD000378 Functional analysis of the rodent tau mutation in a marine unicellular alga PRIDE Ostreococcus tauri instrument model: OrbitrapXL; instrument model: IonTrap XCT Ultra Dataset with its publication pending Thierry Le Bihan 2013-10-18
PXD000246 Human breast cancer cell line LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Velos Kennedy et al. (2014) Jacob Kennedy 2013-10-18
PXD000308 Shotgun label-free quantitative proteomics of water-deficit stressed mid-mature peanut (Arachis hypogaea L.) seed PRIDE Arachis hypogaea LTQ Dataset with its publication pending Masoud zabet-moghaddam 2013-10-17
PXD000352 Proteomic of spearmint (Mentha spicata L.) leaf trichomes PRIDE Mentha spicata 4800 Proteomics Analyzer Champagne & Boutry (2013) Antoine Champagne 2013-10-17
PXD000415 Human Hippo pathway , LC-MSMS PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending Xu Li 2013-10-17
PXD000464 LC-MS data of peptides from p53 isolated by custom immunoaffinity chromatography PRIDE Cercopithecus aethiops (Green monkey) LTQ Orbitrap; instrument model: LTQ Orbitrap Dataset with its publication pending David Perlman 2013-10-17
PXD000506 Host-centric proteomics of stool, part 2 of 2 PRIDE Homo sapiens LTQ Orbitrap Velos Lichtman et al. (2013) Joshua S. Lichtman 2013-10-16
PXD000240 Host-centric proteomics of stool PRIDE Homo sapiens , Mus musculus LTQ Orbitrap Velos Lichtman et al. (2013) Joshua Lichtman 2013-10-16
PXD000346 Protein Expression Profile of PBMC from CA and OP patient samples PRIDE Homo sapiens TripleTOF 5600 Dataset with its publication pending Minlin Ou 2013-10-11
PXD000508 Ultra high resolution linear ion trap Orbitrap mass spectrometer (Orbitrap Elite) facilitates top down LC MS/MS and versatile peptide fragmentation modes PRIDE Homo sapiens LTQ Orbitrap Elite Michalski et al. (2012) Mario Oroshi 2013-10-10
PXD000263 Proteome analysis of the MO3.13 cell line from human oligodendrocytes PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Iwata et al. (2013) Daniel Martins-de-Souza 2013-10-09
PXD000488 Comparative Proteomic profiling of the rostral band of LAL muscle from SMA mice and litter mate controls PRIDE Mus musculus instrument model: LTQ Orbitrap XL; LTQ Orbitrap XL Dataset with its publication pending Douglas Lamont 2013-10-09
PXD000500 Arabidopsis mitochondrial proteome during a diurnal cycle PRIDE Arabidopsis thaliana (Mouse-ear cress) instrument model: IonTrap XCT Ultra Lee, Eubel & Millar (2010) Chun Pong Lee 2013-10-09
PXD000393 Multi-omic analysis of Yersinia response to temperature shift PRIDE Yersinia pseudotuberculosis, Yersinia pestis LTQ; LTQ Orbitrap Velos Dataset with its publication pending Matthew Monroe 2013-10-07
PXD000392 Salmonella growth condition adaptation PRIDE Salmonella typhimurium (strain 14028s / SGSC 2262) LTQ Orbitrap Dataset with its publication pending Matthew Monroe 2013-10-07
PXD000391 Salmonella secretome analysis PRIDE Salmonella typhimurium (strain 14028s / SGSC 2262) LTQ Orbitrap Dataset with its publication pending Matthew Monroe 2013-10-07
PXD000390 Systems analysis of Salmonella regulatory mutants PRIDE Salmonella typhimurium (strain 14028s / SGSC 2262) LTQ Orbitrap Dataset with its publication pending Matthew Monroe 2013-10-07
PXD000389 Time course response of macrophages to Salmonella infection PRIDE Salmonella typhimurium (strain 14028s / SGSC 2262) LTQ Orbitrap Dataset with its publication pending Matthew Monroe 2013-10-07
PXD000388 Subcellular proteomic survey of Salmonella PRIDE Salmonella typhimurium (strain 14028s / SGSC 2262) LTQ Orbitrap Brown et al. (2012) Matthew Monroe 2013-10-07
PXD000324 Signatures for Mass Spectrometry Data Quality, part 5 of 5 PRIDE Shewanella oneidensis (strain MR-1) LTQ Orbitrap Velos Amidan et al. (2014) Matthew Monroe 2013-10-04
PXD000323 Signatures for Mass Spectrometry Data Quality, part 4 of 5 PRIDE Shewanella oneidensis (strain MR-1) LTQ Orbitrap Velos Amidan et al. (2014) Matthew Monroe 2013-10-04
PXD000322 Signatures for Mass Spectrometry Data Quality, part 3 of 5 PRIDE Shewanella oneidensis (strain MR-1) Exactive; Q Exactive Amidan et al. (2014) Matthew Monroe 2013-10-04
PXD000321 Signatures for Mass Spectrometry Data Quality, part 2 of 5 PRIDE Shewanella oneidensis (strain MR-1) LTQ Orbitrap Amidan et al. (2014) Matthew Monroe 2013-10-03
PXD000320 Signatures for Mass Spectrometry Data Quality, part 1 of 5 PRIDE Shewanella oneidensis (strain MR-1) LTQ Velos; LTQ; LTQ XL ETD Amidan et al. (2014) Matthew Monroe 2013-10-03
PXD000163 Anti-FLAG-affinity purification of Umbrea associated factors PRIDE Drosophila melanogaster (Fruit fly) LTQ Orbitrap Dataset with its publication pending Andreas Thomae 2013-10-03
PXD000399 Quantitative LC-MS/MS Analysis of Apical Membrane Proteome of mpkCCD Cells PRIDE Mus musculus LTQ Orbitrap Loo et al. (2013) Ming-Jiun Yu 2013-10-02
PXD000187 Extra-cellular proteins from Lactic Acid Bacteria PRIDE Firmicutes (gram-positive bacteria) instrument model: IonTrap XCT Ultra Butler È et al. (2013) Eile Butler 2013-10-01
PXD000419 Comparative Proteomics in Primates PRIDE Macaca mulatta (Rhesus macaque), Homo sapiens , Pan troglodytes LTQ Orbitrap Velos Khan et al. (2013) Zia Khan 2013-10-01
PXD000065 HiRIEF deep proteomics of A431 human vulvar cancer cell line and N2A mouse neuroblastoma cell line PRIDE Homo Sapiens , Mus musculus LTQ Orbitrap Branca et al. (2014) Rui Branca 2013-09-27
PXD000385 Amniocyte lysate proteome PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Cho et al. (2013) E Diamandis 2013-09-27
PXD000343 SWATH analysis of 1433B_HUMAN affinity purifications from HEK293 cells after time course treatment with IGF1 PRIDE Homo sapiens TripleTOF 5600 Collins et al. (2013) Ben Collins 2013-09-25
PXD000431 Identifcation of Adiponectin and Evidence for Post-Translational Modifications in the Bottlenose Dolphin (Tursiops truncatus) PRIDE Tursiops truncatus (Atlantic bottle-nosed dolphin) (Delphinus truncatus) TripleTOF 5600 Dataset with its publication pending Benjamin Neely 2013-09-23
PXD000444 OOP and PreP peptide cleavage products by LC-MS PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Dataset with its publication pending Rui Branca 2013-09-18
PXD000386 Extracellular Matrix Proteome PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending Christian Niehage 2013-09-12
PXD000168 mouse microglia using High-pH fractionation and LC-MS/MS PRIDE Mus musculus Q Exactive Dataset with its publication pending Dohyun Han 2013-09-11
PXD000105 An extensive proteome map of tomato (Solanum lycopersicum) fruit pericarp PRIDE Solanum lycopersicum (Lycopersicon esculentum) LTQ Xu et al. (2013) Mathilde Causse 2013-09-11
PXD000328 Protein synthesis rate is the predominant regulator of protein expression during differentiation PRIDE Homo sapiens , Mus musculus LTQ Orbitrap; LTQ Orbitrap Velos Kristensen, Gsponer & Foster (2013) Anders Kristensen 2013-09-10
PXD000084 Honey Bee Proteome Atlas PRIDE Apis mellifera ligustica (Common honeybee) (Italian honeybee) LTQ Orbitrap: MS Chan et al. (2013) Queenie Chan 2013-09-10
PXD000420 Human alveolar bone and dental cementum LC-MSMS PRIDE Homo sapiens LTQ FT Salmon et al. (2013) Cristiane R. Salmon 2013-09-09
PXD000417 Arabidopsis cell LC-MSMS PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap; instrument model: LTQ Orbitrap Sun et al. (2013) Takeo Sato 2013-09-06
PXD000449 Chr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. CCD18 Cell line. PRIDE Homo sapiens dissociation method; collision gas; collision gas; dissociation method Segura et al. (2013) Alberto Medina-Aunon 2013-09-06
PXD000023 EHEC O157:H7 Sakai vs. TW14359: Secreted and Cytosolic iTRAQ; sepD secretome analysis of TW14359 PRIDE Escherichia coli O157:H7 (strain TW14359 / EHEC) LTQ Orbitrap; instrument model: LTQ-Orbitrap Morgan et al. (2013) Jason Morgan 2013-09-05
PXD000447 Chr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. Ramos Cell line. PRIDE Homo sapiens collision gas; collision gas Segura et al. (2013) Alberto Medina-Aunon 2013-09-05
PXD000443 Chr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. Jurkat Cell line. PRIDE Homo Sapiens, Homo sapiens collision gas; dissociation method Segura et al. (2013) Alberto Medina-Aunon 2013-09-05
PXD000442 Chr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. MCF7 Cell line. PRIDE Homo Sapiens, Homo sapiens dissociation method; dissociation method; collision gas; collision gas; dissociation method Segura et al. (2013) Alberto Medina-Aunon 2013-09-04
PXD000359 SILAC-based proteomics of human primary endothelial cell morphogenesis unveils tumor angiogenic markers PRIDE Homo sapiens LTQ Orbitrap Zanivan et al. (2013) Sara Zanivan 2013-09-04
PXD000182 Arabidopsis nanodomain-delimited ABA signaling pathway regulates the anion channel SLAH3 PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Velos Demir et al. (2013) Waltraud Schulze 2013-09-02
PXD000430 in Vitro Brominated Peptides Spiked into U373 cell digestion PRIDE Homo sapiens LTQ Orbitrap Elite Dataset with its publication pending HL Liu 2013-08-28
PXD000052 SLP76 interactome in resting and activated primary mast cells PRIDE Mus musculus LTQ Orbitrap Velos Bounab et al. (2013) Hesse Anne-Marie 2013-08-28
PXD000067 U1 Small Nuclear Ribonucleoprotein Complex and RNA Splicing Alterations in Alzheimer Disease PRIDE Homo sapiens LTQ Orbitrap Bai et al. (2013) Junmin Peng 2013-08-28
PXD000035 Surface Proteins of Listeria monocytogenes PRIDE Listeria monocytogenes MALDI Synapt HDMS; instrument model: Waters Synapt HDMS QTOF Zhang et al. (2013) Min Lin 2013-08-27
PXD000278 Quantitative proteomic analysis of breast cancer tissues PRIDE Homo sapiens LTQ Orbitrap Liu et al. (2013) Ning Qing Liu 2013-08-23
PXD000418 Defining, Comparing, and Improving iTRAQ Quantification in Mass Spectrometry Proteomics Data PRIDE Homo sapiens 4800 Proteomics Analyzer; 6520 Quadrupole Time-of-Flight LC/MS; LTQ Orbitrap Velos Hultin-Rosenberg et al. (2013) Henrik J Johansson 2013-08-16
PXD000073 Terminal alkynes react with active-site cysteine nucleophiles PRIDE Mus musculus instrument model: LTQ Orbitrap Velos; instrument model: LTQ Orbitrap Discovery; LTQ Orbitrap Discovery; LTQ Orbitrap Velos Ekkebus et al. (2013) Patrick Wijten 2013-08-14
PXD000264 Temperature-dependent Proteome Study of Thermoanaerobacter tengcongensis PRIDE Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Caldanaerobacter subterraneus subsp. tengcongensis) instrument model: LTQ Orbitrap Velos; LTQ Orbitrap; LTQ Orbitrap Velos; instrument model: LTQ Orbitrap Chen et al. (2013) Bo Wen 2013-08-13
PXD000411 Proteomics of protein secretion by Aggregatibacter actinomycetemcomitans PRIDE Aggregatibacter actinomycetemcomitans D7S-1 instrument model: Bruker HCT ultra ETDII; Bruker Daltonics HCT Series Zijnge, Kieselbach & Oscarsson (2012) Thomas Kieselbach 2013-08-13
PXD000197 AKT2 interacting proteins_ MBP- and MAP-TAPs PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Bottermann et al. (2013) Katharina Bottermann 2013-08-13
PXD000030 Annexin A1 interacting proteins in chronic myeloid leukemia KCL22 cells PRIDE Homo sapiens , Homo sapiens instrument model: IonTrap XCT Ultra Colavita et al. (2013) Irene Colavita 2013-08-13
PXD000335 VHL Cancer PRIDE Homo sapiens instrument model: LTQFT Dataset with its publication pending Laszlo Prokai 2013-08-12
PXD000258 Proteomic response of Alicycliphilus denitrificans strain BC towards the different electron acceptors chlorate, nitrate and oxygen. PRIDE Alicycliphilus denitrificans (strain JCM 14587 / BC) LTQ Orbitrap Oosterkamp et al. (2013) Sjef Boeren 2013-08-12
PXD000409 System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top Orbitrap PRIDE Saccharomyces cerevisiae (Baker's yeast) Q Exactive Nagaraj et al. (2012) Mario Oroshi 2013-08-09
PXD000292 ChaFRADIC: A novel SCX-based approach for N-terminal Enrichment PRIDE Saccharomyces cerevisiae (Baker's yeast) Q Exactive Dataset with its publication pending Saskia Venne 2013-08-09
PXD000189 Searching for Pseudomonas aeruginosa MagD partners PRIDE Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) instrument model: LTQ-Orbitrap Velos pro; LTQ Orbitrap Velos Robert-Genthon et al. (2013) Yohann Couté 2013-08-09
PXD000247 Proteomic analysis of the testa from developing soybean seeds PRIDE Glycine max (Glycine hispida) LTQ Orbitrap; instrument model: LTQ Orbitrap Miernyk & Johnston (2013) Jan Miernyk 2013-08-09
PXD000047 Endogenous Purification Reveals GREB1 as a Key Estrogen Receptor Regulatory Factor PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Mohammed et al. (2013) Hisham Mohammed 2013-08-09
PXD000254 DMSO enhances electrospray response boosting sensitivity of proteomic experiments PRIDE Homo sapiens LTQ Orbitrap; LTQ Orbitrap Velos; LTQ Orbitrap Elite Hahne et al. (2013) Hannes Hahne 2013-08-07
PXD000313 Quantitative proteomics study on rice embryo during embryogenesis by using isobaric tags for relative and absolute quantification (iTRAQ) PRIDE Oryza sativa Q Exactive Dataset with its publication pending Jin Zi 2013-08-06
PXD000095 Determination of Phosphorylation Sites in the DivIVA Protein of Streptomyces coelicolor by Targeted LC-MS/MS PRIDE Streptomyces coelicolor LTQ Orbitrap; instrument model: LTQ Orbitrap Saalbach et al. (2013) Gerhard Saalbach 2013-08-05
PXD000174 CaMKII Cardiac Phosphoproteome PRIDE Mus musculus LTQ Orbitrap Velos Scholten et al. (2013) Arjen Scholten 2013-08-02
PXD000064 The conserved set of host proteins incorporated into HIV-1 virions suggests a common egress pathway in multiple cell types PRIDE Homo sapiens , Human immunodeficiency virus 1 LCQ Classic; Applied Biosystems instrument model Linde et al. (2013) Ceereena Ubaida Mohien 2013-08-02
PXD000265 Oryza sativa egg, sperm, callus, pollen and seedling proteome PRIDE Oryza sativa instrument model: LTQ Orbitrap XL; LTQ Orbitrap XL Abiko et al. (2013) Masato Taoka 2013-08-02
PXD000342 SILAC dat for two TERRA pull-down experiments using different salt conditions (1 M NaCl and 250 mM NaCl) PRIDE Homo sapiens LTQ Orbitrap Dataset with its publication pending F Butter 2013-08-02
PXD000054 Proteogenomic analysis of Helicobacter pylori strain 26695 PRIDE Helicobacter pylori 26695 LTQ Orbitrap; instrument model: LTQ-Orbitrap Müller et al. (2013) Stephan Mueller 2013-08-01
PXD000373 KLK assay for PCa plasma samples (Nilsson, et al.) PeptideAtlas Homo sapiens TSQ Vantage Nilsson et al. (2013) Akos Vegvari Gyorgy Marko-Varga 2013-07-26
PXD000372 Bovine mastitis host-repsonse (Bislev et al.) PeptideAtlas Bos taurus QTRAP 5500 Bislev et al. (2012) Stine Bislev Emoke Bendixen 2013-07-26
PXD000371 Quantif. nucleoporins in HeLa nuclear env. extracts (Ori, et al.) PeptideAtlas Homo sapiens TSQ Vantage Ori et al. (2013) Alessandro Ori Martin Beck 2013-07-26
PXD000370 Quantification of human nuclear pore complex composition in five cell lines (Ori, et al.) PeptideAtlas Homo sapiens TSQ Vantage Ori et al. (2013) Alessandro Ori Martin Beck 2013-07-26
PXD000369 pre-60S particles at different maturation stages (Altvater, et al.) PeptideAtlas Saccharomyces cerevisiae QTRAP 5500 Altvater et al. (2012) Andre Melnik Paola Picotti 2013-07-26
PXD000225 Phosphoproteomics study on protein kinase C delta induced cell death PRIDE Homo sapiens LTQ Orbitrap Xia et al. (2013) Li Xia 2013-07-26
PXD000132 Analysis of lung cancer cell lines GLC1 and GLC1 M13 PRIDE Homo sapiens instrument model: ultraflex TOF/TOF; Bruker Daltonics flex series Poschmann et al. (2013) Gereon Poschmann 2013-07-26
PXD000148 Quantitative proteomics profiling of protein kinase A substrates - Jurkat clone E6.1 PRIDE Homo sapiens LTQ Orbitrap Velos Giansanti et al. (2013) Piero Giansanti 2013-07-25
PXD000283 Comparison and applications of label-free absolute proteome quantification methods on Escherichia coli PRIDE Escherichia coli LTQ Orbitrap; instrument model: LTQ Orbitrap Arike et al. (2012) Liisa Arike 2013-07-24
PXD000190 Quantitative Proteomics of miR-148a in gastric cancer cells PRIDE Homo sapiens instrument model: synapt G2 HDMS; MALDI Synapt G2 HDMS; instrument model: Q-TOF Hu et al. (2013) Chia-Wei Hu 2013-07-24
PXD000281 Retinoic acid receptor alpha is associated with tamoxifen resistance in breast cancer PRIDE Homo sapiens Agilent instrument model; 4800 Proteomics Analyzer; LTQ Orbitrap Johansson et al. (2013) Henrik J Johansson 2013-07-24
PXD000050 The human islet of Langerhans proteome database PRIDE Homo sapiens instrument model: Thermo Scientific LTQ Orbitrap Velos; LTQ Orbitrap Velos Dataset with its publication pending Domitille Schvartz 2013-07-23
PXD000271 Mouse gastrointestinal system mucus nLC-MS/MS PRIDE Mus musculus LTQ Orbitrap Rodríguez-Piñeiro et al. (2013) Ana M. Rodriguez-Pineiro 2013-07-23
PXD000262 Characterisation of PRR11 PRIDE Homo sapiens LTQ Orbitrap Larance et al. (2013) Vackar Afzal 2013-07-23
PXD000126 Prototheca zopfii genotype proteomics analysis PRIDE Prototheca zopfii, Chlorella-like algae instrument model: MALDI UltraFlex; Bruker Daltonics flex series Murugaiyan et al. (2013) Jayaseelan Murugaiyan 2013-07-22
PXD000213 Pandoravirus proteome PRIDE unidentified instrument model: LTQ-Orbitrap Velos pro; LTQ Orbitrap Velos Philippe et al. (2013) Yohann Couté 2013-07-19
PXD000147 Proteomics Analysis of Burkholderia Kirkii PRIDE Candidatus Burkholderia kirkii LTQ Orbitrap XL Carlier et al. (2013) Ulrich Omasits 2013-07-18
PXD000153 Complete Expressed Proteome of Bartonella Henselae PRIDE Bartonella henselae (strain ATCC 49882 / Houston 1) (Rochalimaea henselae) LTQ Orbitrap; LTQ FT Omasits et al. (2013) Ulrich Omasits 2013-07-18
PXD000270 Proteome of Burkholderia cenocepacia H111 in aerobic and micro-oxia condition PRIDE Burkholderia cenocepacia H111 LTQ Orbitrap Dataset with its publication pending Ulrich Omasits 2013-07-18
PXD000183 Human kidney primary proximal tubule cell LC-MSMS PRIDE Homo sapiens LTQ Orbitrap Konvalinka et al. (2013) Ana Konvalinka 2013-07-18
PXD000194 Proteomics analysis of human pericardial fluid PRIDE Homo sapiens LTQ Orbitrap Velos Xiang et al. (2013) fei xiang 2013-07-09
PXD000224 Protein extraction in recalcitrant plant species PRIDE Vitis vinifera , Quercus suber (Cork oak), Pinus pinaster (Maritime pine), Pisolithus tinctorius Marx 270 4700 Proteomics Analyzer Sebastiana et al. (2013) Andreia Figueiredo 2013-07-09
PXD000107 Pseudomonas aeruginosa inner membrane proteome PRIDE Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) instrument model: LTQ-Orbitrap Velos pro; LTQ Orbitrap Velos Casabona et al. (2013) Yohann Couté 2013-07-04
PXD000049 Comparative phosphoproteome of Trypanosoma brucei bloodstream & procyclic form PRIDE Trypanosoma brucei LTQ Orbitrap Velos Urbaniak, Martin & Ferguson (2013) Michael Urbaniak 2013-07-03
PXD000125 Comprehensive identification of proteins from MALDI imaging PRIDE Homo sapiens LTQ Orbitrap; LTQ Orbitrap Elite Maier et al. (2013) Stefan K Maier 2013-07-03
PXD000317 Rice embryogenesis proteins quantification (Zi) PeptideAtlas Oryza sativa QTRAP 5500 Zi et al. (2013) Jin Zi Siqi Liu 2013-07-02
PXD000309 Proteomic portrait of human breast cancer progression identifies novel prognostic markers PRIDE Homo sapiens LTQ Orbitrap Geiger et al. (2012) Mario Oroshi 2013-07-02
PXD000235 bHLH Transcription Factors that Facilitate K+ Uptake During Stomatal Opening are Repressed by Abscisic Acid through Phosphorylation PRIDE Arabidopsis thaliana (thale cress) instrument model: LTQ; LTQ Takahashi et al. (2013) Yohei Takahashi 2013-06-28
PXD000231 Mouse Cochlea Sensory Epithelium Proteome PRIDE Mus musculus LTQ Orbitrap Darville & Sokolowski (2013) Lancia Darville 2013-06-28
PXD000045 LC-MS/MS of cultured Mycobacterium tuberculosis in a hypoxia/reaeration timecourse PRIDE Mycobacterium tuberculosis LTQ Orbitrap; instrument model: LTQ-Orbitrap Galagan et al. (2013) Gingras Olivier 2013-06-25
PXD000069 Shotgun proteomics of Ophrys orchid flowers PRIDE Ophrys exaltata subsp. archipelagi (Ophrys arachnitiformis subsp. archipelagi), Ophrys garganica, Ophrys sphegodes (Early spider orchid) (Arachnites aranifera) LTQ; instrument model: LTQ_1 FGCZ Sedeek et al. (2013) Philipp Schlueter 2013-06-24
PXD000121 Proteomic Profiling of the Mitochondrial Inner Membrane of Rat Renal Proximal Convoluted Tubules PRIDE Rattus norvegicus LTQ Freund, Prenni & Curthoys (2013) Dana Freund 2013-06-20
PXD000284 Comparative proteomic analysis of human bile from malignant and nonmalignant biliary stenosis PRIDE Homo sapiens LTQ Orbitrap Farina et al. (2014) Annarita Farina 2013-06-20
PXD000188 Profiling protein kinases and other ATP binding proteins in Arabidopsis using acyl-ATP probes PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Villamor et al. (2013) Thomas Colby 2013-06-19
PXD000290 Human liver HALT-C (Qin et al.) PeptideAtlas Homo sapiens 6460 Triple Quadrupole LC/MS Qin et al. (2012) Shizhen Qin Leroy Hood 2013-06-18
PXD000151 Adaptation of a commonly used, chemically defined medium for human embryonic stem cells to stable isotope labeling with amino acids in cell culture (SILAC) PRIDE Homo sapiens Q Exactive Liberski et al. (2013) Johannes Graumann 2013-06-17
PXD000208 AP-MS analysis of human histone deacetylase interactions in CEM-T cells PRIDE Homo sapiens LTQ Orbitrap Velos Joshi et al. (2013) T Greco 2013-06-14
PXD000276 Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells PRIDE Schizosaccharomyces pombe (Fission yeast) LTQ Orbitrap; instrument model: LTQ Orbitrap Marguerat et al. (2012) Alexander Schmidt 2013-06-06
PXD000239 Characterization of the novel broad-spectrum kinase inhibitor CTx-0294885 as an affinity reagent for mass spectrometry-based kinome profiling PRIDE Homo sapiens LTQ Orbitrap Velos Zhang et al. (2013) Luxi Zhang 2013-06-05
PXD000076 Shortgun Proteomic analysis of two Bartonella quintana strains PRIDE Bartonella quintana JK 31, Bartonella quintana (Rochalimaea quintana) instrument model: QSTAR-XL; QSTAR XL Fabietti et al. (2013) Shibu Krishnan 2013-06-03
PXD000250 Chlorella vulgaris UTEX 395 Shotgun Proteomic Time Course Analysis Under Nitrogen Deprivation PRIDE Chlorella vulgaris (Green alga) LTQ Orbitrap Velos Guarnieri et al. (2013) Michael Guarnieri 2013-06-03
PXD000230 Membrane enriched proteome of transfected SW480 cells PRIDE Homo sapiens LTQ Cantor et al. (2013) David Cantor 2013-05-30
PXD000195 Arabidopsis root hair protoplasts PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Lan et al. (2013) Ping Lan 2013-05-28
PXD000129 Drosophila immune response PRIDE Drosophila melanogaster (Fruit fly) instrument model: LTQ; instrument model: LTQ FT Ultra; LTQ; LTQ FT Ultra Fukuyama et al. (2013) Yann Verdier 2013-05-22
PXD000236 Dynamic Msn2 phosphorylation changes in yeast (Sunnaker, et al.) PeptideAtlas Saccharomyces cerevisiae TSQ Vantage Sunnåker et al. (2013) Christina Ludwig Ruedi Aebersold 2013-05-17
PXD000259 Regulation of DosR regulon (Schubert) PeptideAtlas Mycobacterium tuberculosis TSQ Vantage Schubert et al. (2013) Olga Schubert Ruedi Aebersold 2013-05-16
PXD000256 M. tuberculosis SRM atlas (Schubert et al.) PeptideAtlas Mycobacterium tuberculosis TSQ Vantage Schubert et al. (2013) Olga Schubert Ruedi Aebersold 2013-05-16
PXD000109 ThinPrep Cervical Smear iTRAQ LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Elite Papachristou et al. (2013) Theodoros Roumeliotis 2013-05-09
PXD000138 Synthetic (Phospho)Peptide Library PRIDE Homo sapiens LTQ Orbitrap Velos Marx et al. (2013) Simone Lemeer 2013-05-05
PXD000211 Arabidopsis nanodomain-delimited ABA signaling pathway regulates the anion channnel SLAH3 PRIDE Arabidopsis thaliana (Mouse-ear cress) instrument model: LCQ Duo; instrument model: qSTAR Demir et al. (2013) Yvonne Reinders 2013-05-02
PXD000172 Quantitative dissection and stoichiometry determination of the human SET1/MLL histone methyltransferase complexes PRIDE Homo sapiens LTQ Orbitrap Velos van Nuland et al. (2013) A.H. Smits 2013-05-02
PXD000165 Analysis of botrytis cinerea mycelium proteins PRIDE Botryotinia fuckeliana (strain T4) (Noble rot fungus) (Botrytis cinerea), Botryotinia fuckeliana (strain B05.10) (Noble rot fungus) (Botrytis cinerea) 4800 Proteomics Analyzer; Synapt MS Gonzalez-Fernandez et al. (2013) Kerman Aloria 2013-05-02
PXD000158 Characterization of the Cardiac Myosin Binding Protein-C Phosphoproteome in Healthy and Failing Human Hearts PRIDE Homo sapiens , Mus musculus LTQ Orbitrap; LTQ Orbitrap Elite Kooij et al. (2013) Ronald Holewinski 2013-05-01
PXD000222 Comparative Phosphoproteomic Analysis of G2-checkpoint Recovery PRIDE Homo sapiens instrument model: LTQ; LTQ Orbitrap; LTQ; instrument model: LTQ-Orbitrap MS Dataset with its publication pending Teck Yew Low 2013-05-01
PXD000217 Phosphoproteomics data classify haematological cancer cell lines according to tumour type and sensitivity to kinase inhibitors PRIDE Homo sapiens , Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Casado et al. (2013) Pedro Casado-Izquierdo 2013-04-26
PXD000083 Glycosyltransferases from oat (Avena) implicated in the acylation of avenacins PRIDE Avena strigosa (black oat) LTQ Orbitrap; instrument model: LTQ Orbitrap Owatworakit et al. (2013) Gerhard Saalbach 2013-04-24
PXD000185 Kinase Substrate Enrichment Analysis Provides Insights into the Heterogeneity of Signaling Pathway Activation in Leukemia Cells PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Casado et al. (2013) Pedro Casado-Izquierdo 2013-04-09
PXD000127 15N Limitation of detection in Pseudomonas fluorescens PRIDE Pseudomonas fluorescens LTQ Orbitrap; instrument model: LTQ Orbitrap Taubert, von Bergen & Seifert (2013) Jana Seifert 2013-04-09
PXD000113 GeLC-MS/MS analysis of cereal aphid saliva PRIDE Metopolophium dirhodum (Rose grain aphid), Sitobion avenae (English grain aphid) LTQ Rao, Carolan & Wilkinson (2013) James Carolan 2013-04-09
PXD000141 Mycobacterium tuberculosis ATP-binding Proteome PRIDE Mycobacterium tuberculosis H37Rv LTQ Wolfe et al. (2013) Karen Dobos 2013-04-08
PXD000123 Long term water deficit stress in grapevine PRIDE Vitis vinifera LTQ Cramer et al. (2013) Steve Van Sluyter 2013-03-25
PXD000120 Proteogenomic Analysis of Human Colon Carcinoma Cell Lines LIM1215, LIM1899 and LIM2405 PRIDE Homo sapiens LTQ Fanayan et al. (2013) Susan Fanayan 2013-03-14
PXD000016 Physiological adaptation of the Rhodococcus jostii RHA1 membrane proteome to steroids as growth substrates PRIDE Rhodococcus sp. (strain RHA1) LTQ Orbitrap; instrument model: LTQ-Orbitrap Haußmann et al. (2013) Ansgar Poetsch 2013-03-06
PXD000043 Proteomic profiling of thermal acclimation in Drosophila melanogaster PRIDE Drosophila (fruit flies) instrument model: HCT Ultra PTM Discovery System; Bruker Daltonics HCT Series Colinet et al. (2013) Emmanuelle Com 2013-03-04
PXD000079 Formalin-fixed Human Ovarian Cancer Tryptic Peptide LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Meding et al. (2013) Stephan Meding 2013-02-28
PXD000124 mESC shotgun and positional proteomics based on deep proteome sequence database (derived from RIBOseq data) PRIDE Mus musculus LTQ Orbitrap; instrument model: LTQ-Orbitrap Menschaert et al. (2013) Gerben Menschaert 2013-02-26
PXD000143 Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives PRIDE Mus musculus LTQ Orbitrap Velos Spruijt et al. (2013) A.H. Smits 2013-02-26
PXD000036 Albuminome from human serum and CSF PRIDE Homo sapiens LTQ Orbitrap Elite Holewinski et al. (2013) Ronald Holewinski 2013-02-25
PXD000157 Proteome analysis of U2OS whole cell lysates PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ Orbitrap Beck et al. (2011) Alexander Schmidt 2013-02-22
PXD000008 Carbon source-induced reprogramming of the cell wall proteome and secretome modulates the adherence and drug resistance of the fungal pathogen Candida albicans PRIDE Candida albicans SC5314 Q-Tof ultima; instrument model: QToF-Ultima Ene et al. (2012) Clemens J. Heilmann 2013-02-20
PXD000128 Rat Liver Microsomes by 2D-LC-MS/MS PRIDE Rattus norvegicus TripleTOF 5600 Golizeh & Sleno (2013) Lekha Sleno 2013-02-19
PXD000150 MSE vs IM-MSE comparison PRIDE Escherichia coli Synapt MS Dataset with its publication pending Yishai Levin 2013-02-18
PXD000142 Streptococcus uberis extracellular proteome PRIDE Streptococcus Bruker Daltonics esquire series; instrument model: Bruker Esquire HCT Plus Dataset with its publication pending Anita Jaglarz 2013-02-13
PXD000071 Rapid and deep profiling of human induced pluripotent stem cell proteome by one-shot nanoLC-MS/MS analysis with meter-scale monolithic silica columns PRIDE Homo sapiens TripleTOF 5600 Yamana et al. (2013) Mio Iwasaki 2013-02-07
PXD000059 Proteomics of the Milk Fat Globule Membrane from Camelus dromedarius PRIDE Camelus dromedarius (Arabian camel) LTQ Orbitrap Saadaoui et al. (2013) HENRY CELINE 2013-02-05
PXD000134 The quantitative proteomes of human-induced pluripotent stem cells and embryonic stem cells PRIDE Homo sapiens LCQ Classic; LTQ Orbitrap Velos Munoz et al. (2011) Teck Yew Low 2013-02-01
PXD000111 Mycobacterium tuberculosis culture filtrate LC-MS/MS PRIDE Mycobacterium tuberculosis H37Rv LTQ FT Albrethsen et al. (2013) Ida Rosenkrands 2013-01-24
PXD000021 D-score PRIDE Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Vaudel et al. (2013) Lennart Martens 2013-01-23
PXD000026 Analysis of E2F2 interacting proteins PRIDE Homo sapiens , Homo sapiens instrument model: Q-Tof Micro (Waters); Q-Tof micro Osinalde et al. (2013) Nerea Osinalde 2013-01-21
PXD000044 Stable isotope labeling with amino acids in mouse xenografts. PRIDE Homo sapiens , Mus musculus LTQ Orbitrap Dataset with its publication pending Serge Urbach 2013-01-17
PXD000039 Chr16-HPP.Pilot experiment.JPR HPP Special issue PRIDE Human dissociation method Segura et al. (2013) J. Alberto Medina-Aunon 2013-01-15
PXD000089 Proteomic and phosphoproteomic data of colorectal cancer tissues and cells for Chromosome-Centric Human Proteome Project PRIDE Homo sapiens LTQ Orbitrap Velos Shiromizu et al. (2013) Takashi Shiromizu 2013-01-11
PXD000061 Proteome-wide purification of O-GlcNAc proteins PRIDE Homo sapiens LTQ Orbitrap; LTQ Orbitrap Velos Hahne et al. (2013) Hannes Hahne 2013-01-10
PXD000066 In-depth membrane proteomic study of breast cancer tissues PRIDE Homo sapiens LTQ Orbitrap Velos Muraoka et al. (2013) satoshi muraoka 2013-01-08
PXD000104 Chick vestibular hair bundles PRIDE Gallus gallus LTQ Orbitrap Velos Shin et al. (2013) Peter Gillespie 2013-01-08
PXD000058 SILAC Osteoblast PRIDE Homo sapiens LTQ Orbitrap Kliemt et al. (2013) Stefanie Kliemt 2012-12-19
PXD000112 Zebrafish plasma analyzed by CE- and LC-MS/MS PRIDE Danio rerio (Brachydanio rerio) Bruker Daltonics amaZon series Dataset with its publication pending Anthonius A.M. Heemskerk 2012-12-18
PXD000094 Proteogenomics of Tistlia consotensis PRIDE Bacteria LTQ Orbitrap; instrument model: LTQ Orbitrap Rubiano-Labrador et al. (2014) Jean ARMENGAUD 2012-12-18
PXD000027 maize leaf ESI-Q-TOF MS PRIDE Zea mays instrument model: ESI-Q-TOF MS Hu et al. (2013) Yufeng Hu 2012-12-14
PXD000025 Phosphoproteomic analysis of Rhodopseudomonas palustris PRIDE Rhodopseudomonas palustris LTQ Orbitrap; instrument model: Triple TOF; TripleTOF 5600; instrument model: LTQ Orbitrap Hu et al. (2012) Chia-Wei Hu 2012-12-12
PXD000101 Human prostate serum SRM (Cima et al.) PeptideAtlas Homo sapiens 4000 QTRAP Cima et al. (2011) Terry Farrah Ruedi Aebersold 2012-12-11
PXD000102 Human urine SRM (Selevsek et al.) PeptideAtlas Homo sapiens TSQ Vantage Selevsek et al. (2011) Terry Farrah Ruedi Aebersold 2012-12-11
PXD000100 Human CAP ovarian cancer plasma (Huettenhain et al.) PeptideAtlas Homo sapiens QTRAP 5500 Hüttenhain et al. (2012) Ruth Hüttenhain Ruedi Aebersold 2012-12-11
PXD000099 Yeast phospho site changes in Pda1 Pfk2 Gpd1 (Oliveira, et al.) PeptideAtlas Saccharomyces cerevisiae TSQ Vantage Oliveira et al. (2012) Christina Ludwig Ruedi Aebersold 2012-12-11
PXD000098 Label-free quantification of Leptospira (Ludwig et al.) PeptideAtlas Leptospira interrogans TSQ Vantage Ludwig et al. (2012) Christina Ludwig Ruedi Aebersold 2012-12-11
PXD000097 dMRM four human chr18 proteins in liver & plasma PeptideAtlas Homo sapiens 6460 Triple Quadrupole LC/MS Zgoda et al. (2013) Aleksey Filimonov Sergei Moshkovskii 2012-12-11
PXD000096 RIPchipSRM C. elegans miR58 targets (Jovanovic, et al.) PeptideAtlas Caenorhabditis elegans 4000 QTRAP Jovanovic et al. (2012) Lukas Reiter Michael O. Hengartner 2012-12-11
PXD000093 Human Chr18. 23 light endogenous peps for 19 prots (Zgoda, et al.) PeptideAtlas Homo sapiens Agilent 6410 Triple Quad Zgoda et al. (2013) Aleksey Filimonov Alexander Archakov 2012-12-11
PXD000092 Human Chr18. 25 light, 17 heavy synth peps for 21 prots (Zgoda, et al.) PeptideAtlas Homo sapiens Agilent 6410 Triple Quad Zgoda et al. (2013) Aleksey Filimonov Alexander Archakov 2012-12-11
PXD000091 Human Chr18. 25 light endogenous peps for 21 prots (Zgoda, et al.) PeptideAtlas Homo sapiens Agilent 6410 Triple Quad Zgoda et al. (2013) Aleksey Filimonov Alexander Archakov 2012-12-11
PXD000048 Tandem MOAC identifies novel in vivo MAP kinase substrates in Arabidopsis thaliana. PRIDE Arabidopsis thaliana (Mouse-ear cress) LTQ Orbitrap Hoehenwarter et al. (2013) Volker Egelhofer 2012-12-11
PXD000004 Identification and quantification of human postmortem frontal cortex proteome with a SILAM mouse brain standard PRIDE Homo sapiens instrument model: QExactive; Q Exactive MacDonald et al. (2012) Matthew L. MacDonald 2012-12-10
PXD000088 Human CAP urine (Huettenhain et al.) PeptideAtlas Homo sapiens TSQ Vantage Hüttenhain et al. (2012) Ruth Hüttenhain Ruedi Aebersold 2012-12-06
PXD000087 Human CAP crude plasma (Huettenhain et al.) PeptideAtlas Homo sapiens TSQ Vantage Hüttenhain et al. (2012) Ruth Hüttenhain Ruedi Aebersold 2012-12-06
PXD000086 Human CAP depleted plasma (Huettenhain et al.) PeptideAtlas Homo sapiens TSQ Vantage Hüttenhain et al. (2012) Ruth Hüttenhain Ruedi Aebersold 2012-12-06
PXD000085 Human Chr18. 25 synthetic peptides for 21 proteins (Zgoda, et al.) PeptideAtlas Homo sapiens Agilent 6410 Triple Quad Zgoda et al. (2013) Aleksey Filimonov Alexander Archakov 2012-12-06
PXD000042 Human plasma LC-MS/MS PRIDE Homo sapiens Bruker Daltonics amaZon series Dataset with its publication pending Ekaterina Mostovenko 2012-12-05
PXD000062 A bioinformatics approach for integrated transcriptomic and proteomic comparative analyses of model and non-sequenced anopheline vectors of human malaria parasites PRIDE Albimanus 6520 Quadrupole Time-of-Flight LC/MS Ubaida Mohien et al. (2013) Ceereena Ubaida Mohien 2012-11-02
PXD000031 Purified FLAG-Hrp1 GeLC-MS/MS PRIDE Schizosaccharomyces pombe (Fission yeast) LTQ Orbitrap Velos Pointner et al. (2012) Punit Prasad 2012-11-01
PXD000056 Cyanophora paradoxa muroplast LC-MSMS PRIDE Cyanophora paradoxa LTQ Orbitrap Facchinelli et al. (2013) Fabio Facchinelli 2012-10-30
PXD000009 Discovery and identification of potential markers of Childhood Absence Epilepsy by MALDI imaging mass spectrometry PRIDE Mus musculus LTQ Orbitrap Lagarrigue et al. (2012) Mélanie Lagarrigue 2012-09-24
PXD000028 HIgh fat refined sugar diet and hippocampus PRIDE Rattus norvegicus LTQ Dataset with its publication pending Heather Francis 2012-09-14
PXD000012 Resveratrol-induced changes of the human adipocyte secretion profile. PRIDE Homo sapiens instrument model: LCQ Duo Rosenow et al. (2012) Jean-Paul Noben 2012-08-31
PXD000017 Analysis of the rat hypothalamus proteome by data independent label-free liquid chromatography tandem mass spectrometry PRIDE Rattus norvegicus microchannel plate detector; Q-TOF Premier; ACQUITY UPLC; electrospray ionization Stelzhammer et al. (2012) Viktoria Stelzhammer 2012-08-23
PXD000013 iQUARI PRIDE Pyrococcus furiosus, Homo sapiens LTQ Orbitrap; instrument model: LTQ-Orbitrap Vaudel et al. (2012) Lennart Martens 2012-08-13
PXD000014 human 293 cells PEDF LC-MS/MS PRIDE Homo sapiens LTQ Orbitrap Jerebtsova et al. (2012) Yuri Obukhov 2012-08-08
PXD000005 Proteomic screen reveals Fbw7 as a modulator of the NF-kB pathway PRIDE Homo sapiens LTQ Orbitrap Velos Arabi et al. (2012) Rui Branca 2012-06-29
PXD000001 TMT spikes PRIDE Erwinia carotovora instrument model: LTQ Orbitrap Velos; LTQ Orbitrap Velos Gatto & Christoforou (2014) Laurent Gatto 2012-05-11
PXD000002 Combined personal saliva proteome and microbioproteome PRIDE Homo sapiens linear ion trap no publication Attila Csordas 2012-05-11
PXD000003 Human CAP ovarian cancer plasma (Huettenhain et al.) PeptideAtlas Homo sapiens QTRAP 5500 Hüttenhain et al. (2012) Ruth Hüttenhain Ruedi Aebersold 2012-05-11

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